Wall clock time and date at job start Tue Mar 31 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47293 * 2 1 4 4 C 1.34228 * 117.00323 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99637 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99894 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47009 * 60.00314 * 6 4 3 8 8 C 1.52990 * 109.47209 * 299.99633 * 6 4 3 9 9 C 1.53005 * 109.47199 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47044 * 60.00083 * 9 8 6 11 11 C 1.53003 * 109.46885 * 299.99884 * 10 9 8 12 12 H 1.08990 * 109.47315 * 300.00006 * 11 10 9 13 13 N 1.46906 * 109.46823 * 180.02562 * 11 10 9 14 14 C 1.47475 * 110.99988 * 75.95849 * 13 11 10 15 15 C 1.53508 * 87.93287 * 138.70141 * 14 13 11 16 16 C 1.50701 * 114.34389 * 220.31628 * 15 14 13 17 17 H 1.07997 * 120.00135 * 93.92234 * 16 15 14 18 18 C 1.37878 * 119.99854 * 273.92261 * 16 15 14 19 19 N 1.31515 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47015 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47206 * 119.99887 * 20 18 16 23 23 H 1.48501 * 109.47358 * 240.00225 * 20 18 16 24 24 C 1.47477 * 110.99584 * 171.93013 * 13 11 10 25 25 C 1.52998 * 109.46893 * 60.00746 * 11 10 9 26 26 H 1.09000 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47050 * 300.00512 * 1 2 3 28 28 H 1.09003 * 109.47296 * 60.00112 * 1 2 3 29 29 H 1.09001 * 109.47571 * 240.00016 * 2 1 3 30 30 H 1.08995 * 109.47470 * 119.99590 * 2 1 3 31 31 H 1.08999 * 109.47691 * 300.00263 * 8 6 4 32 32 H 1.09002 * 109.47134 * 60.00101 * 8 6 4 33 33 H 1.09003 * 109.46961 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46521 * 300.00071 * 9 8 6 35 35 H 1.09000 * 109.46770 * 179.97438 * 10 9 8 36 36 H 1.09003 * 109.47460 * 60.00013 * 10 9 8 37 37 H 1.09005 * 113.47599 * 253.46904 * 14 13 11 38 38 H 1.09001 * 113.48038 * 23.93275 * 14 13 11 39 39 H 1.09002 * 114.17004 * 87.61917 * 15 14 13 40 40 H 0.96996 * 120.00106 * 179.97438 * 19 18 16 41 41 H 1.08998 * 113.48038 * 336.06221 * 24 13 11 42 42 H 1.08997 * 113.47561 * 106.47271 * 24 13 11 43 43 H 1.08990 * 109.47744 * 59.99523 * 25 11 10 44 44 H 1.09000 * 109.46911 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5851 3.4699 0.8888 8 6 3.4487 3.6840 -1.2504 9 6 4.0340 5.0977 -1.2514 10 6 5.5618 5.0171 -1.2521 11 6 6.0338 4.2706 -0.0027 12 1 5.6985 4.8032 0.8871 13 7 7.5008 4.1938 -0.0032 14 6 8.0979 5.4882 0.3747 15 6 9.1150 4.7090 1.2203 16 6 9.4303 5.3414 2.5514 17 1 8.8880 5.0389 3.4349 18 6 10.4113 6.3061 2.6411 19 7 11.0722 6.6741 1.5653 20 14 10.8018 7.0905 4.2909 21 1 9.9244 6.5062 5.3369 22 1 12.2228 6.8335 4.6373 23 1 10.5690 8.5549 4.2103 24 6 8.0020 3.6530 1.2740 25 6 5.4486 2.8569 -0.0019 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.7843 3.1517 -2.1404 32 1 2.3602 3.7411 -1.2501 33 1 3.6981 5.6294 -2.1417 34 1 3.6986 5.6303 -0.3614 35 1 5.9787 6.0243 -1.2533 36 1 5.8972 4.4845 -2.1421 37 1 8.5473 6.0204 -0.4637 38 1 7.4327 6.1172 0.9662 39 1 10.0030 4.3940 0.6722 40 1 11.7620 7.3530 1.6284 41 1 7.3112 3.7922 2.1055 42 1 8.3692 2.6296 1.1980 43 1 5.7839 2.3243 -0.8918 44 1 5.7844 2.3252 0.8884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255358474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:03 Heat of formation + Delta-G solvation = -77.406666 kcal Electronic energy + Delta-G solvation = -22537.700701 eV Core-core repulsion = 19262.102797 eV Total energy + Delta-G solvation = -3275.597904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83258 -39.44599 -37.36212 -36.48572 -32.75329 -32.12714 -31.02706 -30.68537 -26.98328 -25.28353 -24.25915 -23.97216 -22.71814 -21.56671 -20.58194 -19.64928 -18.58924 -17.70128 -16.81567 -16.70826 -16.18290 -15.17052 -14.81166 -14.54061 -14.45708 -14.08987 -13.74179 -13.64856 -13.48146 -13.11054 -12.97720 -12.57156 -12.15184 -11.97258 -11.88197 -11.70030 -11.47697 -11.32690 -11.11402 -10.99131 -10.85200 -10.76019 -10.70003 -10.50823 -10.45677 -10.29679 -9.95940 -9.56791 -9.10215 -8.88042 -8.42259 -7.94381 -6.04271 -4.08468 2.13477 2.51112 3.28219 3.36599 3.40235 4.39907 4.43412 4.54585 4.61525 4.66175 4.70496 4.97472 4.97707 5.09345 5.20641 5.26330 5.32772 5.39107 5.45461 5.46688 5.50111 5.57024 5.65265 5.75555 5.89249 6.01379 6.06830 6.14373 6.21476 6.28576 6.29402 6.34170 6.45686 6.57283 6.63556 6.73960 6.82124 7.16664 7.22634 7.67744 7.75348 7.93756 8.13662 8.39817 8.95162 9.56457 11.05376 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.003361 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.913480 B = 8327.917748 C = 8743.993769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.466 3.534 5 O -0.504 6.504 6 C -0.077 4.077 7 H 0.107 0.893 8 C -0.108 4.108 9 C -0.115 4.115 10 C -0.111 4.111 11 C 0.054 3.946 12 H 0.044 0.956 13 N -0.479 5.479 14 C 0.008 3.992 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 C -0.004 4.004 25 C -0.093 4.093 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.261 0.739 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.150 -7.462 -5.257 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.309 3.691 5 O -0.390 6.390 6 C -0.096 4.096 7 H 0.125 0.875 8 C -0.145 4.145 9 C -0.153 4.153 10 C -0.149 4.149 11 C -0.056 4.056 12 H 0.062 0.938 13 N -0.202 5.202 14 C -0.121 4.121 15 C 0.022 3.978 16 C -0.553 4.553 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.133 4.133 25 C -0.131 4.131 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.670 -7.991 -5.975 22.056 hybrid contribution -0.117 0.678 1.656 1.793 sum -19.787 -7.312 -4.319 21.532 Atomic orbital electron populations 1.21799 0.92681 1.02890 1.03510 1.23008 0.95307 0.80539 1.02587 1.86514 1.24894 1.32111 1.84157 1.23920 0.80284 0.92918 0.72012 1.90677 1.60366 1.43167 1.44837 1.21149 0.97332 0.89138 1.02024 0.87516 1.21522 1.00706 0.96337 0.95955 1.21528 0.96071 0.95521 1.02220 1.21519 0.94094 1.00858 0.98405 1.22127 0.91855 0.94369 0.97230 0.93818 1.68917 1.04747 1.14416 1.32077 1.23990 0.98018 0.91361 0.98740 1.20100 0.92125 0.90348 0.95267 1.21079 1.19353 1.21190 0.93653 0.92444 1.25021 0.95570 0.96705 0.96356 1.69978 1.23687 1.30815 1.27902 0.86575 0.78259 0.79113 0.84286 1.19739 1.20921 1.21009 1.23964 0.99216 1.00070 0.90035 1.21418 0.89993 0.97610 1.04046 0.90326 0.91477 0.91484 0.91308 0.91295 0.91374 0.90867 0.91372 0.91718 0.91575 0.91305 0.91853 0.93008 0.91859 0.92948 0.92954 0.92117 0.90467 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.11 10.12 -39.25 -0.40 -4.51 16 4 C 0.47 6.19 7.26 36.01 0.26 6.45 16 5 O -0.50 -8.18 15.73 -18.75 -0.29 -8.48 16 6 C -0.08 -0.94 2.63 -91.77 -0.24 -1.18 16 7 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 8 C -0.11 -1.12 5.14 -26.73 -0.14 -1.26 16 9 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 10 C -0.11 -1.56 5.33 -26.73 -0.14 -1.70 16 11 C 0.05 0.87 1.54 -67.71 -0.10 0.77 16 12 H 0.04 0.74 7.56 -51.93 -0.39 0.35 16 13 N -0.48 -9.64 6.13 -236.61 -1.45 -11.09 16 14 C 0.01 0.18 6.67 -7.55 -0.05 0.13 16 15 C 0.04 1.02 3.76 -91.24 -0.34 0.68 16 16 C -0.51 -14.05 8.83 -34.44 -0.30 -14.36 16 17 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -25.62 13.26 55.43 0.74 -24.89 16 20 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.00 -0.09 6.28 -7.55 -0.05 -0.14 16 25 C -0.09 -1.40 3.80 -26.73 -0.10 -1.50 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.98 7.74 -51.93 -0.40 0.58 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.05 1.18 7.63 -51.93 -0.40 0.78 16 39 H 0.06 1.76 8.11 -51.93 -0.42 1.34 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.05 1.10 7.76 -51.93 -0.40 0.70 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 44 H 0.07 1.16 7.41 -51.93 -0.38 0.78 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -29.97 351.42 -9.85 -39.82 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.86 Total: -0.66 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -0.85 Total: -11.56 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.72 Total: -35.97 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.69 Total: -12.99 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.97 -9.85 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255358474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.592 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds