Wall clock time and date at job start Tue Mar 31 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47170 * 2 1 4 4 C 1.34232 * 117.00144 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00027 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00150 * 180.02562 * 4 3 2 7 7 H 1.09006 * 109.46732 * 299.99788 * 6 4 3 8 8 C 1.52999 * 109.47394 * 59.99799 * 6 4 3 9 9 C 1.53003 * 109.47003 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47122 * 300.00265 * 9 8 6 11 11 C 1.52999 * 109.47398 * 59.99977 * 10 9 8 12 12 H 1.08998 * 109.46963 * 60.00198 * 11 10 9 13 13 N 1.46903 * 109.47153 * 179.97438 * 11 10 9 14 14 C 1.47962 * 110.99896 * 295.00118 * 13 11 10 15 15 C 1.53932 * 86.17917 * 222.41707 * 14 13 11 16 16 C 1.50703 * 113.73308 * 138.07948 * 15 14 13 17 17 H 1.07994 * 119.99603 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99838 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00380 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47261 * 239.99776 * 20 18 16 23 23 H 1.48500 * 109.47454 * 119.99769 * 20 18 16 24 24 C 1.47959 * 110.99667 * 195.64240 * 13 11 10 25 25 C 1.52998 * 109.46990 * 180.02562 * 6 4 3 26 26 H 1.09003 * 109.47355 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47538 * 300.00139 * 1 2 3 28 28 H 1.09003 * 109.46818 * 59.99828 * 1 2 3 29 29 H 1.08999 * 109.47538 * 239.99861 * 2 1 3 30 30 H 1.09003 * 109.46818 * 120.00172 * 2 1 3 31 31 H 1.08998 * 109.47186 * 300.00251 * 8 6 4 32 32 H 1.09004 * 109.46513 * 59.99968 * 8 6 4 33 33 H 1.08994 * 109.47032 * 60.00505 * 9 8 6 34 34 H 1.08998 * 109.46643 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.47028 * 299.99782 * 10 9 8 36 36 H 1.09001 * 109.47154 * 180.02562 * 10 9 8 37 37 H 1.08996 * 113.75316 * 108.10083 * 14 13 11 38 38 H 1.09002 * 113.85613 * 336.74992 * 14 13 11 39 39 H 1.09002 * 113.73676 * 269.25660 * 15 14 13 40 40 H 0.97001 * 119.99667 * 0.02562 * 19 18 16 41 41 H 1.08994 * 113.76115 * 23.26713 * 24 13 11 42 42 H 1.09004 * 113.75280 * 251.89755 * 24 13 11 43 43 H 1.08998 * 109.47521 * 59.99944 * 25 6 4 44 44 H 1.08994 * 109.47363 * 299.99639 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5851 3.4697 -0.8889 8 6 3.4487 3.6840 1.2504 9 6 4.0331 5.0981 1.2506 10 6 5.5610 5.0185 1.2508 11 6 6.0330 4.2718 0.0015 12 1 5.6970 4.8040 -0.8884 13 7 7.5001 4.1960 0.0014 14 6 8.1006 5.5429 -0.1190 15 6 9.0905 4.9004 -1.1074 16 6 9.3710 5.7475 -2.3218 17 1 8.8912 6.7088 -2.4321 18 6 10.2399 5.2953 -3.2920 19 7 10.8245 4.1250 -3.1575 20 14 10.5881 6.3456 -4.7970 21 1 9.8116 7.6085 -4.7098 22 1 10.1906 5.6042 -6.0208 23 1 12.0384 6.6590 -4.8573 24 6 8.0117 3.8265 -1.3368 25 6 5.4486 2.8573 0.0010 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.3602 3.7411 1.2500 32 1 3.7844 3.1516 2.1403 33 1 3.6970 5.6302 0.3607 34 1 3.6972 5.6298 2.1408 35 1 5.8970 4.4864 2.1408 36 1 5.9773 6.0259 1.2514 37 1 8.5664 5.8996 0.7995 38 1 7.4407 6.2806 -0.5755 39 1 9.9969 4.5205 -0.6360 40 1 10.6440 3.5797 -2.3758 41 1 7.3247 4.0609 -2.1498 42 1 8.4066 2.8120 -1.3911 43 1 5.7846 2.3255 -0.8892 44 1 5.7846 2.3248 0.8907 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255358476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:05 Heat of formation + Delta-G solvation = -102.303979 kcal Electronic energy + Delta-G solvation = -22622.194628 eV Core-core repulsion = 19345.517096 eV Total energy + Delta-G solvation = -3276.677532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93809 -40.95809 -38.60118 -37.60201 -34.94990 -33.00199 -32.00836 -31.97076 -28.38150 -27.10018 -25.65096 -25.46151 -23.60130 -22.82130 -21.80653 -20.84608 -20.72934 -19.08146 -18.55381 -17.66655 -17.54339 -16.72895 -16.20646 -15.86969 -15.70231 -15.46491 -15.21990 -15.01606 -14.53599 -14.38116 -13.99270 -13.66556 -13.60030 -13.43843 -13.17369 -12.95014 -12.84543 -12.67111 -12.52111 -12.40689 -12.29511 -11.97480 -11.91998 -11.79520 -11.60585 -11.53941 -11.39045 -11.18282 -10.98525 -10.63188 -10.50059 -9.66433 -8.62756 -6.34649 1.06426 1.53689 1.56715 1.62555 1.78413 2.56868 3.03302 3.17098 3.44673 3.57795 3.74071 3.96018 3.99119 4.00394 4.05135 4.16439 4.18398 4.30267 4.32410 4.34845 4.37085 4.37787 4.57305 4.58151 4.67900 4.79151 4.83638 4.90187 4.96491 4.97748 5.03736 5.07709 5.10512 5.13345 5.17439 5.21072 5.38377 5.43707 5.49604 5.51120 6.05624 6.18063 6.29225 6.60844 6.63886 7.46940 8.76591 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.003589 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.390729 B = 7800.646275 C = 8398.650687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.354 6.354 4 C 0.469 3.531 5 O -0.543 6.543 6 C -0.072 4.072 7 H 0.123 0.877 8 C -0.101 4.101 9 C -0.107 4.107 10 C -0.109 4.109 11 C 0.054 3.946 12 H 0.041 0.959 13 N -0.484 5.484 14 C 0.028 3.972 15 C -0.002 4.002 16 C -0.603 4.603 17 H 0.051 0.949 18 C -0.031 4.031 19 N -0.936 5.936 20 Si 1.119 2.881 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.280 1.280 24 C 0.016 3.984 25 C -0.083 4.083 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.258 0.742 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.878 -1.394 8.687 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.270 6.270 4 C 0.314 3.686 5 O -0.432 6.432 6 C -0.092 4.092 7 H 0.141 0.859 8 C -0.138 4.138 9 C -0.144 4.144 10 C -0.147 4.147 11 C -0.055 4.055 12 H 0.059 0.941 13 N -0.206 5.206 14 C -0.100 4.100 15 C -0.022 4.022 16 C -0.641 4.641 17 H 0.069 0.931 18 C -0.230 4.230 19 N -0.572 5.572 20 Si 0.941 3.059 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.206 1.206 24 C -0.114 4.114 25 C -0.121 4.121 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.720 -2.076 7.876 23.197 hybrid contribution -0.445 -0.410 0.560 0.825 sum -22.165 -2.486 8.437 23.846 Atomic orbital electron populations 1.21814 0.89940 1.04400 1.03926 1.23314 0.97399 0.79351 1.02321 1.86504 1.23477 1.33555 1.83511 1.24080 0.80762 0.92800 0.70973 1.90673 1.61354 1.44441 1.46774 1.21120 0.94753 0.89190 1.04131 0.85938 1.21535 1.02197 0.95740 0.94378 1.21498 0.93051 0.95900 1.04000 1.21574 0.97004 0.99841 0.96293 1.22209 0.89016 0.95525 0.98795 0.94105 1.68442 1.07698 1.17165 1.27300 1.23715 0.96591 0.91066 0.98627 1.20496 0.92844 0.93975 0.94845 1.22298 1.29764 1.05457 1.06568 0.93094 1.27298 0.92880 0.97984 1.04805 1.70844 1.43792 1.11880 1.30693 0.82902 0.76770 0.74109 0.72070 1.19338 1.20781 1.20612 1.23870 0.98463 0.99051 0.89993 1.21218 0.92552 0.96331 1.02020 0.88299 0.90830 0.91209 0.91902 0.91443 0.88315 0.91561 0.90748 0.88750 0.91645 0.91660 0.90270 0.91790 0.96282 0.93251 0.93202 0.93660 0.93932 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 10.29 71.98 0.74 -0.76 16 2 C 0.05 0.88 6.19 71.98 0.45 1.32 16 3 O -0.35 -7.70 10.12 -51.43 -0.52 -8.22 16 4 C 0.47 12.46 7.26 71.24 0.52 12.98 16 5 O -0.54 -18.51 15.73 21.96 0.35 -18.17 16 6 C -0.07 -1.70 2.63 -11.54 -0.03 -1.73 16 7 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 8 C -0.10 -1.78 5.14 30.60 0.16 -1.62 16 9 C -0.11 -1.83 5.92 30.59 0.18 -1.65 16 10 C -0.11 -2.70 5.19 30.59 0.16 -2.54 16 11 C 0.05 1.71 1.54 44.93 0.07 1.78 16 12 H 0.04 1.35 7.68 -2.39 -0.02 1.34 16 13 N -0.48 -19.50 5.98 -882.60 -5.28 -24.78 16 14 C 0.03 1.18 6.39 86.40 0.55 1.74 16 15 C 0.00 -0.13 3.09 -10.89 -0.03 -0.16 16 16 C -0.60 -33.76 8.77 25.60 0.22 -33.53 16 17 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 18 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 19 N -0.94 -57.86 13.65 21.45 0.29 -57.56 16 20 Si 1.12 50.19 29.90 68.60 2.05 52.25 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.02 0.75 6.86 86.41 0.59 1.34 16 25 C -0.08 -2.59 3.91 30.61 0.12 -2.47 16 26 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 31 H 0.10 1.33 8.11 -2.39 -0.02 1.31 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.06 1.63 7.33 -2.39 -0.02 1.61 16 37 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.06 2.56 7.80 -2.39 -0.02 2.54 16 39 H 0.02 1.09 7.61 -2.39 -0.02 1.07 16 40 H 0.26 16.24 7.04 -92.71 -0.65 15.59 16 41 H 0.05 2.42 7.65 -2.39 -0.02 2.40 16 42 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.04 1.54 7.69 -2.39 -0.02 1.52 16 44 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -69.02 349.85 2.11 -66.91 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 1.06 Total: 16.21 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 4.16 Total: -26.64 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -4.98 Total: -82.34 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.18 Total: -26.39 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.25 kcal Total: -69.02 2.11 -66.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255358476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.399 kcal (2) G-P(sol) polarization free energy of solvation -69.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds