Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47410 * 2 1 4 4 C 1.34223 * 117.00475 * 179.97438 * 3 2 1 5 5 O 1.20838 * 119.99595 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00706 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.46913 * 300.00725 * 6 4 3 8 8 C 1.53002 * 109.46926 * 59.99777 * 6 4 3 9 9 C 1.53002 * 109.47128 * 60.00444 * 8 6 4 10 10 C 1.52997 * 109.46978 * 59.99726 * 9 8 6 11 11 C 1.53002 * 109.47415 * 300.00098 * 10 9 8 12 12 H 1.09002 * 109.47070 * 300.00053 * 11 10 9 13 13 N 1.46899 * 109.47394 * 180.02562 * 11 10 9 14 14 C 1.47479 * 111.00415 * 155.97491 * 13 11 10 15 15 C 1.53508 * 87.93036 * 221.29721 * 14 13 11 16 16 C 1.50705 * 114.16987 * 139.67102 * 15 14 13 17 17 H 1.07996 * 119.99631 * 266.15735 * 16 15 14 18 18 C 1.37876 * 120.00078 * 86.15427 * 16 15 14 19 19 N 1.31510 * 119.99955 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99733 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47091 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47041 * 120.00059 * 20 18 16 23 23 H 1.48498 * 109.46908 * 240.00058 * 20 18 16 24 24 C 1.47479 * 110.99925 * 59.99877 * 13 11 10 25 25 C 1.52992 * 109.47490 * 179.97438 * 6 4 3 26 26 H 1.08999 * 109.47067 * 59.99609 * 1 2 3 27 27 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47207 * 299.99687 * 1 2 3 29 29 H 1.09005 * 109.46935 * 239.99871 * 2 1 3 30 30 H 1.08999 * 109.47067 * 120.00391 * 2 1 3 31 31 H 1.08996 * 109.47407 * 300.00784 * 8 6 4 32 32 H 1.09002 * 109.47596 * 180.02562 * 8 6 4 33 33 H 1.09002 * 109.47097 * 299.99925 * 9 8 6 34 34 H 1.08998 * 109.47844 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47140 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47497 * 60.00450 * 10 9 8 37 37 H 1.09003 * 113.47098 * 336.05971 * 14 13 11 38 38 H 1.08993 * 113.48049 * 106.52730 * 14 13 11 39 39 H 1.08995 * 114.34166 * 272.35601 * 15 14 13 40 40 H 0.97005 * 119.99796 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.48061 * 253.46921 * 24 13 11 42 42 H 1.08995 * 113.47433 * 23.88095 * 24 13 11 43 43 H 1.09002 * 109.47103 * 179.97438 * 25 6 4 44 44 H 1.08998 * 109.46862 * 60.00752 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5851 3.4697 -0.8887 8 6 3.4488 3.6839 1.2504 9 6 3.9199 2.9366 2.4997 10 6 5.4477 2.8565 2.5001 11 6 5.9198 2.1099 1.2509 12 1 5.5031 1.1026 1.2504 13 7 7.3867 2.0324 1.2516 14 6 7.8563 0.8922 0.4426 15 6 8.8988 0.6178 1.5355 16 6 9.1001 -0.8437 1.8433 17 1 8.5463 -1.3077 2.6459 18 6 9.9913 -1.5883 1.1001 19 7 10.6660 -1.0230 0.1229 20 14 10.2402 -3.4000 1.4811 21 1 9.3695 -3.7908 2.6188 22 1 9.8887 -4.2098 0.2871 23 1 11.6610 -3.6395 1.8409 24 6 7.8775 1.3166 2.4440 25 6 5.4486 2.8572 0.0023 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.3603 3.7410 1.2501 32 1 3.8651 4.6913 1.2508 33 1 3.5032 1.9294 2.4992 34 1 3.5833 3.4682 3.3897 35 1 5.7834 2.3237 3.3899 36 1 5.8645 3.8637 2.5006 37 1 7.1160 0.0988 0.3397 38 1 8.2941 1.1873 -0.5109 39 1 9.8337 1.1643 1.4119 40 1 11.2933 -1.5468 -0.3997 41 1 8.3335 1.9714 3.1866 42 1 7.1426 0.6372 2.8757 43 1 5.8653 3.8644 0.0023 44 1 5.7852 2.3253 -0.8875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255358478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -70.068516 kcal Electronic energy + Delta-G solvation = -23296.589559 eV Core-core repulsion = 20021.309861 eV Total energy + Delta-G solvation = -3275.279698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97423 -39.18500 -37.30497 -36.18608 -32.68960 -31.98100 -30.96315 -30.60256 -26.89318 -25.14908 -24.24872 -23.90232 -22.60889 -21.64217 -20.64452 -19.57252 -18.46316 -17.37541 -16.86971 -16.39998 -15.92463 -15.40285 -14.75707 -14.41528 -14.40540 -13.86833 -13.77051 -13.59253 -13.16835 -13.04506 -12.83223 -12.26680 -12.06464 -11.98376 -11.86439 -11.74673 -11.56812 -11.26938 -11.15913 -10.91744 -10.88083 -10.66365 -10.58703 -10.51732 -10.30241 -10.04298 -9.70791 -9.46381 -8.99501 -8.78664 -8.34872 -7.78663 -5.97689 -4.00960 2.29619 2.65001 3.32674 3.40410 3.44618 4.44389 4.50270 4.65357 4.70841 4.76435 4.81001 4.91940 5.10906 5.18068 5.20616 5.33301 5.41460 5.50169 5.54843 5.56806 5.57614 5.62159 5.74010 5.86878 5.90040 6.07283 6.13294 6.22204 6.25735 6.30688 6.33718 6.43041 6.57134 6.70652 6.79854 6.84352 6.93657 7.27714 7.36405 7.82078 7.86027 8.01394 8.25199 8.47922 9.01844 9.63228 11.12144 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.004697 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.901655 B = 5960.287965 C = 6879.648540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.362 6.362 4 C 0.460 3.540 5 O -0.488 6.488 6 C -0.077 4.077 7 H 0.106 0.894 8 C -0.108 4.108 9 C -0.121 4.121 10 C -0.115 4.115 11 C 0.038 3.962 12 H 0.071 0.929 13 N -0.481 5.481 14 C 0.010 3.990 15 C 0.039 3.961 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.001 4.001 25 C -0.090 4.090 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.260 0.740 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.359 8.274 0.298 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.374 6.374 6 C -0.097 4.097 7 H 0.124 0.876 8 C -0.146 4.146 9 C -0.159 4.159 10 C -0.153 4.153 11 C -0.071 4.071 12 H 0.089 0.911 13 N -0.204 5.204 14 C -0.119 4.119 15 C 0.020 3.980 16 C -0.551 4.551 17 H 0.075 0.925 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.130 4.130 25 C -0.128 4.128 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.832 8.606 0.006 20.705 hybrid contribution -0.280 -2.048 0.174 2.074 sum -19.112 6.558 0.180 20.207 Atomic orbital electron populations 1.21789 0.92806 1.02851 1.03311 1.22992 0.95143 0.80602 1.02734 1.86485 1.25037 1.32060 1.84399 1.23867 0.80294 0.93050 0.72530 1.90710 1.59806 1.43082 1.43833 1.21182 0.97406 0.89679 1.01389 0.87626 1.21540 1.01014 0.99319 0.92698 1.21579 0.96736 1.00079 0.97517 1.21626 0.94057 1.01282 0.98321 1.22419 0.91887 0.99415 0.93407 0.91148 1.68857 1.07789 1.36067 1.07659 1.23991 0.98948 0.90084 0.98895 1.20109 0.92749 0.95236 0.89892 1.21088 1.23312 0.93985 1.16674 0.92543 1.25001 0.95319 0.98272 0.95006 1.69982 1.26323 1.35961 1.20229 0.86588 0.77906 0.85569 0.78256 1.19778 1.21035 1.20952 1.23889 0.99054 0.95693 0.94353 1.21340 0.90000 1.01888 0.99587 0.91609 0.90369 0.91572 0.91285 0.91270 0.90949 0.90202 0.92732 0.91477 0.91877 0.91439 0.92609 0.92249 0.91958 0.93043 0.92387 0.93131 0.90091 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.53 10.12 -39.24 -0.40 -4.93 16 4 C 0.46 6.65 5.74 36.00 0.21 6.85 16 5 O -0.49 -8.94 13.41 -18.76 -0.25 -9.19 16 6 C -0.08 -0.94 3.11 -91.78 -0.29 -1.22 16 7 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 8 C -0.11 -1.11 5.39 -26.73 -0.14 -1.26 16 9 C -0.12 -1.46 5.70 -26.73 -0.15 -1.61 16 10 C -0.12 -1.71 5.10 -26.73 -0.14 -1.85 16 11 C 0.04 0.67 1.31 -67.74 -0.09 0.59 16 12 H 0.07 1.46 4.89 -51.93 -0.25 1.20 16 13 N -0.48 -10.17 6.15 -236.63 -1.45 -11.63 16 14 C 0.01 0.24 7.06 -7.54 -0.05 0.19 16 15 C 0.04 1.03 3.77 -91.24 -0.34 0.69 16 16 C -0.51 -14.58 8.82 -34.44 -0.30 -14.89 16 17 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 19 N -0.89 -26.43 13.26 55.43 0.74 -25.69 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.00 -0.02 6.01 -7.54 -0.05 -0.07 16 25 C -0.09 -1.37 4.58 -26.76 -0.12 -1.49 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 30 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 31 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.73 7.22 -51.93 -0.37 0.36 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.99 7.03 -51.93 -0.36 0.63 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.45 7.50 -51.93 -0.39 1.06 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.14 7.61 -51.93 -0.40 0.74 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.19 7.99 -51.93 -0.42 0.77 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.37 344.61 -9.80 -41.17 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.65 Total: 0.42 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.95 Total: -12.15 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.72 Total: -37.32 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.65 Total: -14.12 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.37 -9.80 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255358478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.896 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds