Wall clock time and date at job start Tue Mar 31 2020 06:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00269 * 2 1 4 4 O 1.20824 * 119.99684 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99988 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46942 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47127 * 185.00287 * 6 5 3 8 8 C 1.52999 * 109.46626 * 299.99539 * 7 6 5 9 9 C 1.52997 * 109.47592 * 300.00035 * 8 7 6 10 10 N 1.46905 * 109.47305 * 180.02562 * 9 8 7 11 11 C 1.47473 * 110.99890 * 155.97104 * 10 9 8 12 12 C 1.53509 * 87.93120 * 221.29341 * 11 10 9 13 13 C 1.50704 * 114.34257 * 139.68261 * 12 11 10 14 14 H 1.07996 * 120.00376 * 266.08015 * 13 12 11 15 15 C 1.37877 * 119.99719 * 86.07755 * 13 12 11 16 16 N 1.31514 * 120.00008 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00053 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47321 * 90.00165 * 17 15 13 19 19 H 1.48503 * 109.46700 * 209.99724 * 17 15 13 20 20 H 1.48495 * 109.47039 * 329.99690 * 17 15 13 21 21 C 1.47475 * 110.99876 * 59.99826 * 10 9 8 22 22 C 1.52996 * 109.47165 * 60.00300 * 9 8 7 23 23 C 1.52997 * 109.47232 * 65.00165 * 6 5 3 24 24 H 1.08993 * 109.47570 * 299.99836 * 1 2 3 25 25 H 1.09010 * 109.46924 * 60.00263 * 1 2 3 26 26 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47263 * 60.00324 * 5 3 2 28 28 H 1.08998 * 109.47345 * 300.00182 * 5 3 2 29 29 H 1.09001 * 109.47289 * 305.00240 * 6 5 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 31 31 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 33 33 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47140 * 300.00346 * 9 8 7 35 35 H 1.08998 * 113.47893 * 336.06278 * 11 10 9 36 36 H 1.09000 * 113.47733 * 106.53201 * 11 10 9 37 37 H 1.09001 * 114.17426 * 272.37844 * 12 11 10 38 38 H 0.97002 * 120.00324 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47554 * 253.46935 * 21 10 9 40 40 H 1.08998 * 113.48049 * 23.87876 * 21 10 9 41 41 H 1.08992 * 109.47534 * 180.02562 * 22 9 8 42 42 H 1.08996 * 109.47134 * 59.99508 * 22 9 8 43 43 H 1.09000 * 109.47140 * 180.02562 * 23 6 5 44 44 H 1.09001 * 109.47230 * 299.99295 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7419 0.0011 7 6 5.5229 2.8236 -0.1241 8 6 6.1712 2.0997 1.0576 9 6 5.7308 2.7613 2.3650 10 7 6.3538 2.0666 3.4996 11 6 6.4443 2.9514 4.6759 12 6 7.8488 2.3842 4.9250 13 6 8.8646 3.4093 5.3593 14 1 9.4954 3.8891 4.6257 15 6 8.9886 3.7345 6.6934 16 7 9.8754 4.6287 7.0726 17 14 7.8980 2.9042 7.9625 18 1 8.5635 1.6721 8.4569 19 1 7.6665 3.8317 9.0989 20 1 6.5972 2.5487 7.3407 21 6 7.8247 2.1252 3.4120 22 6 4.2081 2.6797 2.4902 23 6 3.5597 3.4035 1.3084 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7808 0.8908 29 1 3.5382 3.2577 -0.8407 30 1 5.8366 2.3523 -1.0555 31 1 5.8319 3.8689 -0.1242 32 1 5.8621 1.0544 1.0573 33 1 7.2560 2.1582 0.9687 34 1 6.0398 3.8066 2.3653 35 1 6.4426 4.0116 4.4230 36 1 5.7305 2.7037 5.4615 37 1 7.8636 1.4794 5.5325 38 1 9.9624 4.8578 8.0112 39 1 8.2809 1.1773 3.1265 40 1 8.1915 2.9643 2.8210 41 1 3.8943 3.1514 3.4212 42 1 3.8991 1.6344 2.4897 43 1 3.8684 4.4489 1.3086 44 1 2.4749 3.3455 1.3976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256982819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:42 Heat of formation + Delta-G solvation = -68.406035 kcal Electronic energy + Delta-G solvation = -22860.964027 eV Core-core repulsion = 19585.756420 eV Total energy + Delta-G solvation = -3275.207607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93156 -39.76652 -37.94141 -36.47097 -32.86890 -31.82013 -30.77834 -29.36722 -27.70929 -26.54460 -25.15477 -23.65082 -22.25848 -21.63231 -20.63142 -18.84624 -18.47179 -17.80905 -16.99410 -16.83873 -16.57088 -15.73400 -15.11376 -14.66828 -14.31225 -14.01531 -13.76692 -13.65430 -13.42181 -13.20341 -12.86322 -12.39876 -12.32627 -12.25657 -12.05178 -11.79770 -11.59946 -11.40590 -11.07359 -11.01853 -10.94498 -10.65612 -10.58303 -10.47766 -10.21065 -9.93812 -9.88497 -9.61143 -9.31385 -9.09232 -8.54155 -8.09040 -6.09842 -4.09990 2.03893 2.53413 3.30388 3.38769 3.43961 4.42012 4.43007 4.54278 4.64426 4.83163 4.86749 4.91392 4.94265 5.05702 5.17380 5.22787 5.29344 5.31838 5.42289 5.55047 5.58584 5.64215 5.69238 5.77534 5.93605 6.01652 6.07696 6.10777 6.16839 6.21906 6.24406 6.30138 6.41095 6.52075 6.52966 6.55337 6.60815 6.78343 7.05934 7.38121 7.57611 7.70864 7.93079 8.49898 8.93339 9.53471 11.02761 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029307 B = 0.003663 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.177088 B = 7643.166778 C = 8082.619548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.505 6.505 5 C -0.116 4.116 6 C -0.072 4.072 7 C -0.112 4.112 8 C -0.116 4.116 9 C 0.050 3.950 10 N -0.481 5.481 11 C -0.009 4.009 12 C -0.001 4.001 13 C -0.510 4.510 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.900 5.900 17 Si 0.876 3.124 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.257 1.257 21 C 0.011 3.989 22 C -0.108 4.108 23 C -0.122 4.122 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.523 -7.815 -15.680 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.393 6.393 5 C -0.153 4.153 6 C -0.091 4.091 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.059 4.059 10 N -0.203 5.203 11 C -0.138 4.138 12 C -0.020 4.020 13 C -0.548 4.548 14 H 0.091 0.909 15 C -0.129 4.129 16 N -0.538 5.538 17 Si 0.703 3.297 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.181 1.181 21 C -0.117 4.117 22 C -0.145 4.145 23 C -0.159 4.159 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.053 -8.058 -15.509 23.731 hybrid contribution -0.412 0.581 0.651 0.965 sum -16.466 -7.476 -14.858 23.405 Atomic orbital electron populations 1.23238 0.76582 1.03571 1.02477 1.86528 1.23310 1.33887 1.84209 1.23987 0.92456 0.81133 0.71942 1.90632 1.67336 1.36176 1.45131 1.21691 0.86855 1.00514 1.06273 1.20968 0.96014 0.92723 0.99365 1.21569 0.93628 1.01451 0.98321 1.21634 1.00435 0.99912 0.93388 1.22188 0.94839 0.96665 0.92205 1.68890 1.09141 1.38913 1.03402 1.24331 1.00871 0.95734 0.92847 1.20511 0.92501 0.96717 0.92303 1.20929 1.18738 1.21540 0.93583 0.90883 1.25019 0.94773 0.94606 0.98535 1.69913 1.34584 1.32497 1.16761 0.86862 0.82209 0.79466 0.81115 1.20316 1.21557 1.18149 1.23711 0.88412 0.99787 0.99813 1.21504 0.94534 1.00654 0.97851 1.21710 1.01279 0.99501 0.93454 0.91888 0.92043 0.88228 0.87834 0.86574 0.90536 0.91760 0.91334 0.91325 0.91609 0.93585 0.91936 0.92061 0.92724 0.92628 0.91787 0.92211 0.92120 0.91801 0.91833 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.74 10.56 -39.26 -0.41 -4.16 16 3 C 0.46 5.17 7.68 36.00 0.28 5.45 16 4 O -0.51 -6.80 13.72 -18.75 -0.26 -7.06 16 5 C -0.12 -1.11 4.58 -27.89 -0.13 -1.24 16 6 C -0.07 -0.75 2.31 -90.62 -0.21 -0.96 16 7 C -0.11 -1.15 5.45 -26.73 -0.15 -1.29 16 8 C -0.12 -1.46 4.83 -26.73 -0.13 -1.59 16 9 C 0.05 0.77 1.60 -67.71 -0.11 0.66 16 10 N -0.48 -8.90 6.15 -236.63 -1.45 -10.36 16 11 C -0.01 -0.19 6.48 -7.56 -0.05 -0.24 16 12 C 0.00 -0.02 2.95 -91.24 -0.27 -0.29 16 13 C -0.51 -14.07 9.38 -34.44 -0.32 -14.40 16 14 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 17 Si 0.88 21.31 27.14 -169.99 -4.61 16.70 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.26 -5.97 5.68 56.52 0.32 -5.65 16 21 C 0.01 0.23 6.01 -7.56 -0.05 0.18 16 22 C -0.11 -1.50 5.15 -26.73 -0.14 -1.64 16 23 C -0.12 -1.50 5.19 -26.73 -0.14 -1.63 16 24 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 25 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.12 1.16 4.82 -51.93 -0.25 0.91 16 29 H 0.08 0.80 7.96 -51.93 -0.41 0.38 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.83 6.54 -51.93 -0.34 0.49 16 33 H 0.07 0.87 7.03 -51.93 -0.36 0.51 16 34 H 0.05 0.78 7.52 -51.93 -0.39 0.39 16 35 H 0.06 1.37 7.50 -51.93 -0.39 0.98 16 36 H 0.06 1.31 7.11 -51.93 -0.37 0.94 16 37 H 0.05 1.29 7.04 -51.93 -0.37 0.93 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.19 7.61 -51.93 -0.40 0.80 16 41 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 42 H 0.06 0.88 6.32 -51.93 -0.33 0.55 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.01 5.96 -51.93 -0.31 0.70 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -30.78 333.99 -8.72 -39.51 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.35 Total: 0.49 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.44 Total: -13.68 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.68 Total: -36.83 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.67 Total: -11.22 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.61 Total: 16.70 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.78 -8.72 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256982819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.899 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds