Wall clock time and date at job start Tue Mar 31 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45196 * 109.46963 * 2 1 4 4 C 1.34230 * 117.00064 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99619 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00320 * 179.97438 * 4 3 2 7 7 N 1.46897 * 110.01708 * 319.64656 * 6 4 3 8 8 C 1.46906 * 110.99860 * 65.22629 * 7 6 4 9 9 C 1.53003 * 109.46916 * 173.26636 * 8 7 6 10 10 C 1.50705 * 115.56272 * 319.90264 * 9 8 7 11 11 H 1.07999 * 119.99879 * 98.27693 * 10 9 8 12 12 C 1.37878 * 119.99798 * 278.27493 * 10 9 8 13 13 N 1.31513 * 120.00443 * 6.91335 * 12 10 9 14 14 Si 1.86799 * 119.99882 * 186.91451 * 12 10 9 15 15 H 1.48497 * 109.47092 * 89.99721 * 14 12 10 16 16 H 1.48499 * 109.47402 * 210.00049 * 14 12 10 17 17 H 1.48500 * 109.47132 * 330.00263 * 14 12 10 18 18 C 1.52998 * 117.49826 * 174.21663 * 9 8 7 19 19 C 1.53000 * 117.49576 * 105.59313 * 9 8 7 20 20 C 1.53878 * 110.07300 * 81.06294 * 6 4 3 21 21 C 1.54267 * 106.59718 * 119.30729 * 20 6 4 22 22 C 1.54891 * 104.19666 * 23.61007 * 21 20 6 23 23 C 1.54262 * 110.03249 * 198.25604 * 6 4 3 24 24 H 1.09005 * 109.47037 * 60.00361 * 1 2 3 25 25 H 1.09001 * 109.47081 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47044 * 300.00466 * 1 2 3 27 27 H 1.08997 * 109.47044 * 239.99534 * 2 1 3 28 28 H 1.09001 * 109.47046 * 120.00138 * 2 1 3 29 29 H 1.00901 * 111.00470 * 189.17847 * 7 6 4 30 30 H 1.09006 * 109.47032 * 53.26958 * 8 7 6 31 31 H 1.08992 * 109.47399 * 293.26819 * 8 7 6 32 32 H 0.96996 * 120.00627 * 174.98457 * 13 12 10 33 33 H 1.08995 * 117.50385 * 145.02261 * 18 9 8 34 34 H 1.09000 * 117.49625 * 359.97438 * 18 9 8 35 35 H 1.08990 * 117.49962 * 359.97438 * 19 9 8 36 36 H 1.09002 * 117.51224 * 214.96868 * 19 9 8 37 37 H 1.08994 * 110.03546 * 238.59149 * 20 6 4 38 38 H 1.09002 * 110.02934 * 0.02562 * 20 6 4 39 39 H 1.08994 * 110.48689 * 264.93502 * 21 20 6 40 40 H 1.09000 * 110.48488 * 142.28967 * 21 20 6 41 41 H 1.08995 * 110.75766 * 203.74368 * 22 21 20 42 42 H 1.09004 * 110.75362 * 80.37154 * 22 21 20 43 43 H 1.09003 * 110.48921 * 335.72932 * 23 6 4 44 44 H 1.08997 * 110.48649 * 98.37711 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 3.1407 3.8038 -0.8948 8 6 1.7714 3.9811 -0.3931 9 6 1.0435 5.0169 -1.2522 10 6 1.8651 6.2100 -1.6678 11 1 2.3179 6.2389 -2.6479 12 6 2.0386 7.2647 -0.7969 13 7 1.6043 7.1735 0.4411 14 14 2.8905 8.8233 -1.3753 15 1 1.8812 9.7649 -1.9229 16 1 3.5907 9.4589 -0.2304 17 1 3.8767 8.4850 -2.4327 18 6 -0.4437 5.2454 -0.9749 19 6 -0.0064 4.5036 -2.2397 20 6 3.9157 3.5117 1.4264 21 6 5.3865 3.8027 1.7896 22 6 6.0897 3.9714 0.4199 23 6 5.3944 2.8995 -0.4557 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.5967 4.6946 -1.0237 30 1 1.8049 4.3254 0.6407 31 1 1.2404 3.0305 -0.4423 32 1 1.7900 7.8848 1.0740 33 1 -0.8279 6.2585 -1.0931 34 1 -0.9036 4.6574 -0.1807 35 1 -0.1783 3.4280 -2.2775 36 1 -0.1032 5.0287 -3.1899 37 1 3.3344 4.4332 1.4562 38 1 3.4968 2.7830 2.1205 39 1 5.8167 2.9652 2.3386 40 1 5.4610 4.7207 2.3724 41 1 7.1569 3.7672 0.5058 42 1 5.9175 4.9698 0.0177 43 1 5.8260 1.9161 -0.2691 44 1 5.4748 3.1584 -1.5114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262013480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:32 Heat of formation + Delta-G solvation = -69.865513 kcal Electronic energy + Delta-G solvation = -24012.253427 eV Core-core repulsion = 20736.982532 eV Total energy + Delta-G solvation = -3275.270895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56400 -38.10958 -36.68380 -35.96619 -32.88700 -31.96037 -31.39818 -28.61574 -27.81983 -25.44214 -24.07404 -23.46892 -21.83647 -20.99806 -20.52185 -19.26988 -18.94047 -17.14347 -16.44881 -16.25090 -15.60221 -15.26993 -14.71239 -14.55564 -13.91638 -13.79913 -13.58393 -13.40134 -13.08612 -12.72864 -12.42262 -12.00633 -11.82947 -11.74541 -11.47336 -11.39012 -11.00776 -10.94027 -10.84044 -10.83038 -10.72678 -10.64023 -10.43446 -10.34851 -10.25717 -10.04673 -9.90412 -9.31157 -8.75369 -8.45104 -8.10405 -7.42237 -6.05451 -4.10916 2.56021 3.02263 3.26099 3.34384 3.37361 4.37212 4.69247 4.78989 4.98812 5.04166 5.05371 5.13299 5.24632 5.34833 5.36899 5.53367 5.67142 5.68727 5.79998 5.83243 5.89520 5.90051 6.09787 6.12033 6.13978 6.24050 6.27851 6.38403 6.42965 6.56220 6.60632 6.73768 6.76910 6.84856 6.98905 7.08531 7.17761 7.49652 7.52730 7.85679 7.98830 8.15138 8.37504 8.53564 8.93131 9.53869 11.01795 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.007521 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.987404 B = 3721.800619 C = 5078.085253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.334 6.334 4 C 0.488 3.512 5 O -0.523 6.523 6 C 0.120 3.880 7 N -0.657 5.657 8 C 0.090 3.910 9 C 0.051 3.949 10 C -0.491 4.491 11 H 0.061 0.939 12 C 0.072 3.928 13 N -0.877 5.877 14 Si 0.884 3.116 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.273 1.273 18 C -0.166 4.166 19 C -0.206 4.206 20 C -0.150 4.150 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.111 4.111 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.367 0.633 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.259 0.741 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -9.340 2.260 10.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.250 6.250 4 C 0.332 3.668 5 O -0.412 6.412 6 C 0.026 3.974 7 N -0.294 5.294 8 C -0.038 4.038 9 C 0.050 3.950 10 C -0.529 4.529 11 H 0.079 0.921 12 C -0.131 4.131 13 N -0.514 5.514 14 Si 0.712 3.288 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.204 4.204 19 C -0.244 4.244 20 C -0.190 4.190 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.149 4.149 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.192 0.808 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.930 -10.018 1.982 10.624 hybrid contribution 0.410 1.333 0.582 1.511 sum 3.340 -8.685 2.564 9.652 Atomic orbital electron populations 1.21784 0.92855 1.02356 1.03850 1.22992 0.95456 0.81821 1.01849 1.86862 1.24427 1.30360 1.83341 1.23860 0.80410 0.92255 0.70310 1.90568 1.60690 1.43024 1.46876 1.21444 0.94173 0.88081 0.93701 1.60791 1.03489 1.20479 1.44612 1.21816 0.87604 0.97334 0.97036 1.18816 0.87161 0.94199 0.94787 1.20462 1.31795 0.99799 1.00860 0.92056 1.24984 0.95285 0.97823 0.95055 1.69986 1.44897 1.33373 1.03137 0.86729 0.79673 0.83996 0.78407 1.20751 1.21415 1.19761 1.22537 1.01733 0.99201 0.96900 1.22958 1.09977 0.97124 0.94300 1.22949 0.98074 1.02732 0.95196 1.22303 0.94835 1.01234 0.97395 1.22508 0.98998 0.99451 0.95244 1.22470 0.91165 1.00480 1.00754 0.91213 0.90814 0.91533 0.91641 0.91939 0.80827 0.94356 0.91336 0.93112 0.90494 0.92133 0.91756 0.90925 0.88166 0.92325 0.91986 0.91394 0.91392 0.90785 0.89692 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.29 37.16 0.38 -1.34 16 2 C 0.05 0.73 6.19 37.16 0.23 0.96 16 3 O -0.33 -5.83 6.84 -39.26 -0.27 -6.10 16 4 C 0.49 8.92 6.62 36.00 0.24 9.16 16 5 O -0.52 -9.99 15.23 -18.75 -0.29 -10.28 16 6 C 0.12 2.11 0.85 -131.64 -0.11 2.00 16 7 N -0.66 -13.17 6.04 -100.00 -0.60 -13.77 16 8 C 0.09 1.95 5.03 -3.82 -0.02 1.93 16 9 C 0.05 1.21 1.70 -155.66 -0.26 0.94 16 10 C -0.49 -12.51 7.21 -34.44 -0.25 -12.76 16 11 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 12 C 0.07 1.84 5.41 -17.82 -0.10 1.74 16 13 N -0.88 -23.21 13.09 55.43 0.73 -22.48 16 14 Si 0.88 20.11 29.55 -169.99 -5.02 15.08 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C -0.17 -3.83 9.67 -26.73 -0.26 -4.09 16 19 C -0.21 -4.51 9.88 -26.73 -0.26 -4.78 16 20 C -0.15 -2.53 5.51 -25.61 -0.14 -2.67 16 21 C -0.12 -1.71 6.83 -25.07 -0.17 -1.89 16 22 C -0.12 -1.73 6.91 -24.73 -0.17 -1.90 16 23 C -0.11 -1.73 5.87 -25.07 -0.15 -1.88 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 29 H 0.37 7.81 7.14 -39.29 -0.28 7.53 16 30 H 0.04 0.90 5.91 -51.93 -0.31 0.59 16 31 H 0.07 1.46 5.03 -51.93 -0.26 1.20 16 32 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 33 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.10 1.95 6.13 -51.93 -0.32 1.63 16 38 H 0.06 0.96 7.67 -51.93 -0.40 0.56 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.33 6.77 -51.93 -0.35 0.98 16 44 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -27.21 348.62 -8.62 -35.82 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.37 Total: 11.04 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.04 Total: -14.57 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.12 Total: -36.25 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.55 Total: -16.38 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.21 -8.62 -35.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262013480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.044 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds