Wall clock time and date at job start Tue Mar 31 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00490 * 2 1 4 4 H 1.08999 * 110.05567 * 28.58443 * 3 2 1 5 5 C 1.54268 * 110.03116 * 267.17286 * 3 2 1 6 6 C 1.54892 * 104.19370 * 264.32297 * 5 3 2 7 7 C 1.54972 * 102.77791 * 322.08186 * 6 5 3 8 8 C 1.53867 * 110.03689 * 150.00455 * 3 2 1 9 9 H 1.09003 * 110.03028 * 359.95128 * 8 3 2 10 10 C 1.50707 * 110.03085 * 238.57353 * 8 3 2 11 11 O 1.21275 * 120.00163 * 338.18528 * 10 8 3 12 12 N 1.34780 * 119.99492 * 158.19128 * 10 8 3 13 13 C 1.46998 * 120.60930 * 174.81536 * 12 10 8 14 14 C 1.53190 * 108.74055 * 126.38502 * 13 12 10 15 15 C 1.53033 * 109.33785 * 54.61969 * 14 13 12 16 16 C 1.50706 * 109.45935 * 178.61456 * 15 14 13 17 17 H 1.08002 * 119.99708 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00014 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99781 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47272 * 59.99413 * 20 18 16 22 22 H 1.48493 * 109.46978 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46957 * 299.99926 * 20 18 16 24 24 C 1.53045 * 109.53894 * 298.61821 * 15 14 13 25 25 C 1.46923 * 120.63666 * 354.78421 * 12 10 8 26 26 H 1.08996 * 109.47351 * 59.99634 * 1 2 3 27 27 H 1.09001 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46851 * 300.00024 * 1 2 3 29 29 H 1.09000 * 110.48860 * 22.99851 * 5 3 2 30 30 H 1.09002 * 110.48827 * 145.64610 * 5 3 2 31 31 H 1.08988 * 110.75751 * 80.37189 * 6 5 3 32 32 H 1.09001 * 110.75684 * 203.56053 * 6 5 3 33 33 H 1.08998 * 110.48066 * 279.23964 * 7 6 5 34 34 H 1.08994 * 110.52688 * 156.56403 * 7 6 5 35 35 H 1.09005 * 109.62987 * 6.59226 * 13 12 10 36 36 H 1.09006 * 109.57784 * 246.14656 * 13 12 10 37 37 H 1.09002 * 109.49521 * 294.64948 * 14 13 12 38 38 H 1.09003 * 109.49644 * 174.59214 * 14 13 12 39 39 H 1.09004 * 109.46369 * 58.64446 * 15 14 13 40 40 H 0.97007 * 119.99371 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.49292 * 181.32205 * 24 15 14 42 42 H 1.08997 * 109.49460 * 301.38093 * 24 15 14 43 43 H 1.09000 * 109.58257 * 113.84568 * 25 12 10 44 44 H 1.09002 * 109.58297 * 353.42366 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3410 2.0126 0.4899 5 6 2.2906 1.7590 -1.4476 6 6 3.7774 1.3920 -1.6795 7 6 4.4276 1.7146 -0.3102 8 6 3.3684 1.2777 0.7227 9 1 3.5838 0.2686 1.0742 10 6 3.3543 2.2368 1.8851 11 8 2.5592 3.1523 1.9062 12 7 4.2255 2.0771 2.9010 13 6 4.3010 3.0672 3.9849 14 6 4.1389 2.3431 5.3251 15 6 5.1759 1.2221 5.4240 16 6 5.0413 0.5297 6.7558 17 1 4.2916 0.8568 7.4611 18 6 5.8758 -0.5206 7.0743 19 7 6.7890 -0.9185 6.2156 20 14 5.7085 -1.3792 8.7248 21 1 4.3449 -1.9545 8.8476 22 1 6.7147 -2.4670 8.8211 23 1 5.9323 -0.3990 9.8176 24 6 4.9455 0.2109 4.2985 25 6 5.1170 0.9101 2.9464 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.6512 1.2202 -2.1468 30 1 2.1434 2.8346 -1.5456 31 1 3.8816 0.3332 -1.9159 32 1 4.2084 2.0070 -2.4695 33 1 4.6260 2.7830 -0.2245 34 1 5.3465 1.1433 -0.1794 35 1 3.5033 3.8007 3.8670 36 1 5.2685 3.5685 3.9550 37 1 3.1370 1.9189 5.3905 38 1 4.2885 3.0502 6.1410 39 1 6.1768 1.6441 5.3338 40 1 7.3764 -1.6572 6.4399 41 1 5.6696 -0.5994 4.3836 42 1 3.9362 -0.1937 4.3740 43 1 6.1509 1.2356 2.8318 44 1 4.8575 0.2207 2.1430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337167754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:29 Heat of formation + Delta-G solvation = -98.872993 kcal Electronic energy + Delta-G solvation = -23324.189937 eV Core-core repulsion = 20047.661183 eV Total energy + Delta-G solvation = -3276.528753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.32053 -38.43155 -36.74971 -35.65262 -33.51730 -31.45112 -30.21192 -29.04890 -28.27664 -26.38238 -26.00006 -23.22247 -22.39477 -21.22173 -20.75654 -19.43586 -18.24173 -17.54748 -16.38988 -16.13421 -15.77268 -15.32829 -15.08216 -14.64562 -14.52234 -14.05508 -13.81929 -13.27516 -13.12387 -12.81027 -12.63727 -12.34625 -12.28978 -11.94290 -11.56400 -11.50332 -11.39972 -11.26748 -11.11494 -10.92644 -10.77716 -10.68504 -10.53534 -10.36473 -10.09908 -9.66013 -9.59085 -9.33466 -9.17506 -8.91874 -8.38147 -8.00742 -6.03537 -4.09628 2.92861 3.29784 3.32359 3.34570 3.37660 3.88654 4.40693 4.43414 4.54008 4.84548 5.07285 5.21918 5.25651 5.30929 5.34725 5.38011 5.40462 5.58388 5.60932 5.68927 5.74761 5.76711 5.80837 5.84989 5.94990 5.98320 6.05119 6.10144 6.14434 6.23891 6.33385 6.44825 6.65432 6.88980 7.03249 7.14881 7.22270 7.27719 7.65705 7.91243 7.92368 8.03379 8.39760 8.53582 8.93370 9.55478 11.02006 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.004247 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.175045 B = 6591.511663 C = 6795.941484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.092 3.908 4 H 0.084 0.916 5 C -0.142 4.142 6 C -0.118 4.118 7 C -0.107 4.107 8 C -0.115 4.115 9 H 0.110 0.890 10 C 0.520 3.480 11 O -0.562 6.562 12 N -0.596 5.596 13 C 0.111 3.889 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.125 4.125 25 C 0.101 3.899 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.105 0.895 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 3.092 -14.652 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.034 3.966 4 H 0.102 0.898 5 C -0.180 4.180 6 C -0.156 4.156 7 C -0.145 4.145 8 C -0.136 4.136 9 H 0.128 0.872 10 C 0.308 3.692 11 O -0.442 6.442 12 N -0.327 5.327 13 C -0.011 4.011 14 C -0.161 4.161 15 C 0.031 3.969 16 C -0.551 4.551 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.163 4.163 25 C -0.021 4.021 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.045 3.264 -14.625 16.158 hybrid contribution -0.191 -0.439 1.034 1.139 sum -6.236 2.825 -13.591 15.218 Atomic orbital electron populations 1.22765 0.81273 1.02480 0.99950 1.87896 1.19501 1.27838 1.94957 1.22690 0.94089 0.84812 0.95024 0.89775 1.22834 0.97390 1.01249 0.96514 1.22458 0.94849 1.01688 0.96555 1.22264 0.97136 1.01771 0.93304 1.21991 0.96054 1.01043 0.94557 0.87162 1.20302 0.80172 0.85574 0.83188 1.90602 1.39234 1.34770 1.79586 1.48229 1.37580 1.24671 1.22227 1.21724 1.01267 0.90941 0.87188 1.22002 1.01134 0.99146 0.93842 1.18630 0.93547 0.90851 0.93920 1.21170 1.17412 1.15714 1.00813 0.92779 1.24950 0.95106 0.96939 0.96886 1.69825 1.20326 1.28009 1.34933 0.86675 0.77786 0.79210 0.84436 1.20340 1.21288 1.20316 1.22028 1.01705 1.01208 0.91367 1.22123 0.92784 0.86258 1.00923 0.94279 0.89760 0.93939 0.91000 0.90744 0.90917 0.91328 0.91101 0.90387 0.90391 0.92177 0.92988 0.92177 0.95458 0.92914 0.87686 0.94219 0.91876 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.44 16 2 O -0.38 -5.35 10.25 -35.23 -0.36 -5.71 16 3 C 0.09 1.27 2.92 -25.62 -0.07 1.19 16 4 H 0.08 1.30 6.30 -51.93 -0.33 0.97 16 5 C -0.14 -1.58 6.57 -25.07 -0.16 -1.74 16 6 C -0.12 -1.21 6.91 -24.69 -0.17 -1.38 16 7 C -0.11 -1.27 6.36 -25.03 -0.16 -1.43 16 8 C -0.12 -1.67 2.31 -90.65 -0.21 -1.88 16 9 H 0.11 1.64 5.97 -51.93 -0.31 1.33 16 10 C 0.52 9.18 6.71 -10.98 -0.07 9.11 16 11 O -0.56 -11.25 14.90 5.56 0.08 -11.17 16 12 N -0.60 -10.81 2.97 -172.71 -0.51 -11.32 16 13 C 0.11 2.05 6.44 -3.67 -0.02 2.02 16 14 C -0.12 -2.55 5.30 -26.62 -0.14 -2.69 16 15 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 16 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -24.38 11.31 55.43 0.63 -23.76 16 20 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C -0.12 -2.76 5.15 -26.61 -0.14 -2.90 16 25 C 0.10 1.81 6.32 -3.72 -0.02 1.79 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.47 8.10 -51.92 -0.42 0.05 16 29 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.73 8.14 -51.94 -0.42 0.30 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 41 H 0.11 2.57 6.03 -51.93 -0.31 2.26 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 1.11 5.41 -51.93 -0.28 0.83 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -29.18 340.54 -8.17 -37.36 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.46 Total: 1.51 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.66 Total: -7.91 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.11 Total: -35.08 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.28 Total: -16.87 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.18 -8.17 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337167754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.517 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds