Wall clock time and date at job start Tue Mar 31 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00102 * 2 1 4 4 H 1.09002 * 110.05509 * 331.41808 * 3 2 1 5 5 C 1.54260 * 110.03173 * 92.83138 * 3 2 1 6 6 C 1.54889 * 104.19484 * 142.89712 * 5 3 2 7 7 C 1.54886 * 102.75097 * 322.05647 * 6 5 3 8 8 C 1.53869 * 110.03325 * 210.00144 * 3 2 1 9 9 H 1.09003 * 110.03678 * 121.38225 * 8 3 2 10 10 C 1.50695 * 110.03283 * 359.97438 * 8 3 2 11 11 O 1.21284 * 120.00061 * 266.76958 * 10 8 3 12 12 N 1.34774 * 120.00356 * 86.77242 * 10 8 3 13 13 C 1.46926 * 120.63173 * 179.97438 * 12 10 8 14 14 C 1.53196 * 108.77200 * 126.41420 * 13 12 10 15 15 C 1.53044 * 109.31537 * 54.63479 * 14 13 12 16 16 C 1.50696 * 109.45858 * 178.61289 * 15 14 13 17 17 H 1.08003 * 120.00403 * 35.02275 * 16 15 14 18 18 C 1.37877 * 119.99853 * 215.02026 * 16 15 14 19 19 N 1.31516 * 120.00236 * 184.76735 * 18 16 15 20 20 Si 1.86802 * 119.99919 * 4.76982 * 18 16 15 21 21 H 1.48500 * 109.46996 * 84.55997 * 20 18 16 22 22 H 1.48501 * 109.46943 * 204.55625 * 20 18 16 23 23 H 1.48497 * 109.47448 * 324.55620 * 20 18 16 24 24 C 1.53036 * 109.53425 * 298.63459 * 15 14 13 25 25 C 1.46925 * 120.63068 * 0.02562 * 12 10 8 26 26 H 1.09002 * 109.47530 * 300.00277 * 1 2 3 27 27 H 1.09003 * 109.47155 * 59.99875 * 1 2 3 28 28 H 1.08996 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.09006 * 110.48713 * 261.57282 * 5 3 2 30 30 H 1.08993 * 110.48924 * 24.21937 * 5 3 2 31 31 H 1.09006 * 110.76044 * 80.37393 * 6 5 3 32 32 H 1.09000 * 110.75800 * 203.73946 * 6 5 3 33 33 H 1.08994 * 110.48724 * 279.26961 * 7 6 5 34 34 H 1.08997 * 110.49143 * 156.61952 * 7 6 5 35 35 H 1.08993 * 109.58735 * 6.62549 * 13 12 10 36 36 H 1.08999 * 109.58457 * 246.19751 * 13 12 10 37 37 H 1.09006 * 109.49324 * 174.58398 * 14 13 12 38 38 H 1.08994 * 109.49915 * 294.67887 * 14 13 12 39 39 H 1.08999 * 109.45874 * 58.65520 * 15 14 13 40 40 H 0.97000 * 120.00408 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.49578 * 301.41019 * 24 15 14 42 42 H 1.09002 * 109.52203 * 181.33241 * 24 15 14 43 43 H 1.09004 * 109.58554 * 353.37874 * 25 12 10 44 44 H 1.09001 * 109.58871 * 113.79905 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0127 -0.4899 5 6 2.2906 1.7591 1.4475 6 6 3.6252 2.5389 1.3494 7 6 4.4266 1.7156 0.3107 8 6 3.3683 1.2778 -0.7228 9 1 3.3578 1.9709 -1.5640 10 6 3.6669 -0.1176 -1.2073 11 8 4.3174 -0.8731 -0.5167 12 7 3.2111 -0.5261 -2.4080 13 6 3.4945 -1.8833 -2.8942 14 6 2.1724 -2.5559 -3.2770 15 6 1.4265 -1.6722 -4.2794 16 6 0.1412 -2.3469 -4.6842 17 1 -0.4095 -2.9354 -3.9653 18 6 -0.3317 -2.2128 -5.9724 19 7 -1.4989 -2.7223 -6.3008 20 14 0.6854 -1.3074 -7.2512 21 1 1.6707 -2.2419 -7.8521 22 1 -0.2093 -0.7813 -8.3133 23 1 1.4031 -0.1795 -6.6050 24 6 1.1117 -0.3204 -3.6347 25 6 2.4222 0.3778 -3.2563 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.4931 2.4111 1.8042 30 1 2.4006 0.8955 2.1034 31 1 3.4544 3.5535 0.9895 32 1 4.1375 2.5504 2.3115 33 1 4.8816 0.8450 0.7830 34 1 5.1881 2.3357 -0.1623 35 1 3.9829 -2.4585 -2.1077 36 1 4.1439 -1.8302 -3.7680 37 1 2.3758 -3.5269 -3.7289 38 1 1.5608 -2.6902 -2.3849 39 1 2.0487 -1.5180 -5.1609 40 1 -1.8318 -2.6276 -7.2070 41 1 0.5101 -0.4758 -2.7392 42 1 0.5597 0.3001 -4.3407 43 1 2.2032 1.2945 -2.7087 44 1 2.9844 0.6148 -4.1595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337167755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:32 Heat of formation + Delta-G solvation = -95.387481 kcal Electronic energy + Delta-G solvation = -24023.554425 eV Core-core repulsion = 20747.176814 eV Total energy + Delta-G solvation = -3276.377610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35804 -38.29661 -36.90424 -35.63114 -33.41322 -31.58621 -30.64563 -29.14708 -28.28322 -26.39752 -25.95776 -23.10537 -22.55423 -21.14482 -20.94315 -19.45548 -18.24674 -17.46235 -16.86534 -16.21920 -16.05741 -15.23696 -14.87708 -14.47836 -14.32144 -14.23590 -13.71630 -13.54413 -13.15998 -12.84506 -12.77828 -12.43704 -12.41131 -11.96190 -11.88516 -11.50509 -11.32381 -11.31198 -11.19914 -10.97804 -10.79336 -10.73076 -10.67851 -10.44975 -9.94861 -9.69981 -9.50136 -9.38001 -9.24027 -9.08671 -8.54224 -8.02351 -6.09611 -4.08324 3.01478 3.25374 3.34149 3.34538 3.44513 3.81859 4.38987 4.39176 4.48779 4.75675 5.03816 5.09630 5.16045 5.26417 5.30619 5.40653 5.44409 5.48198 5.53743 5.60966 5.73214 5.73597 5.75549 5.84980 5.89000 5.92912 5.94681 6.00569 6.06356 6.12876 6.28714 6.36979 6.39602 6.73085 6.79841 6.88696 7.04145 7.28372 7.33862 7.46820 7.74750 7.92373 8.51961 8.63152 8.96442 9.53877 11.03948 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025491 B = 0.005260 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.143706 B = 5321.529398 C = 5628.112407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.097 3.903 4 H 0.069 0.931 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.117 4.117 9 H 0.097 0.903 10 C 0.540 3.460 11 O -0.552 6.552 12 N -0.597 5.597 13 C 0.110 3.890 14 C -0.115 4.115 15 C 0.017 3.983 16 C -0.508 4.508 17 H 0.071 0.929 18 C 0.070 3.930 19 N -0.902 5.902 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.266 1.266 24 C -0.123 4.123 25 C 0.103 3.897 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.997 12.228 11.407 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C 0.039 3.961 4 H 0.087 0.913 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.138 4.138 9 H 0.115 0.885 10 C 0.328 3.672 11 O -0.430 6.430 12 N -0.329 5.329 13 C -0.012 4.012 14 C -0.153 4.153 15 C -0.002 4.002 16 C -0.546 4.546 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.540 5.540 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.190 1.190 24 C -0.161 4.161 25 C -0.019 4.019 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.302 11.616 11.591 18.391 hybrid contribution -0.038 0.755 -1.007 1.259 sum 8.264 12.371 10.584 18.258 Atomic orbital electron populations 1.22805 0.80820 1.03248 0.99545 1.88073 1.19735 1.26124 1.94784 1.22648 0.92742 0.85714 0.95045 0.91298 1.22889 0.97675 1.00553 0.97130 1.22406 0.95608 0.98390 0.99399 1.22363 0.96444 1.00710 0.95503 1.22156 0.96227 0.96039 0.99405 0.88470 1.19888 0.78308 0.88603 0.80397 1.90594 1.41246 1.55947 1.55243 1.47978 1.52589 1.14492 1.17815 1.21721 0.98442 0.82365 0.98648 1.21923 0.94321 0.99051 1.00048 1.19098 0.96131 0.91435 0.93583 1.20993 1.05549 1.31033 0.97049 0.91040 1.25075 0.94658 0.95055 0.98357 1.69912 1.18340 1.46156 1.19603 0.86867 0.80370 0.80790 0.81460 1.20263 1.21764 1.19032 1.22214 0.94094 0.98982 1.00848 1.21930 0.94020 0.92380 0.93612 0.94583 0.93561 0.89413 0.91436 0.90163 0.91430 0.91075 0.89172 0.91337 0.90081 0.92564 0.91624 0.92400 0.95286 0.92721 0.92063 0.92085 0.91414 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.60 101.05 1.07 1.49 16 2 O -0.37 -5.69 8.81 -35.23 -0.31 -6.00 16 3 C 0.10 1.21 3.09 -25.62 -0.08 1.13 16 4 H 0.07 0.74 7.81 -51.93 -0.41 0.34 16 5 C -0.14 -1.52 6.56 -25.08 -0.16 -1.68 16 6 C -0.12 -1.10 6.91 -24.74 -0.17 -1.27 16 7 C -0.11 -1.28 6.30 -25.07 -0.16 -1.44 16 8 C -0.12 -1.53 2.38 -90.66 -0.22 -1.74 16 9 H 0.10 1.09 6.50 -51.93 -0.34 0.75 16 10 C 0.54 9.26 5.52 -10.99 -0.06 9.20 16 11 O -0.55 -11.14 14.98 5.55 0.08 -11.06 16 12 N -0.60 -10.36 2.97 -172.74 -0.51 -10.87 16 13 C 0.11 2.00 6.43 -3.71 -0.02 1.98 16 14 C -0.12 -2.33 5.34 -26.61 -0.14 -2.48 16 15 C 0.02 0.37 1.72 -91.73 -0.16 0.21 16 16 C -0.51 -13.71 8.86 -34.44 -0.31 -14.02 16 17 H 0.07 2.13 8.06 -52.48 -0.42 1.71 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 20 Si 0.88 20.85 26.98 -169.99 -4.59 16.26 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -5.90 6.84 56.52 0.39 -5.51 16 24 C -0.12 -2.39 5.34 -26.59 -0.14 -2.53 16 25 C 0.10 1.67 6.23 -3.69 -0.02 1.65 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.25 6.80 -51.93 -0.35 0.89 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.03 0.66 5.30 -51.93 -0.28 0.38 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 41 H 0.06 1.22 7.44 -51.93 -0.39 0.83 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.07 0.91 5.41 -51.93 -0.28 0.63 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 337.43 15.07 5.08 5.08 Total: -1.00 -31.67 337.43 -7.58 -39.25 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.44 Total: 1.17 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.67 Total: -7.66 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.26 Total: -37.06 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.23 Total: -17.05 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.59 Total: 16.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.67 -7.58 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337167755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.133 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds