Wall clock time and date at job start Tue Mar 31 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99708 * 2 1 4 4 H 1.09002 * 110.05544 * 28.58621 * 3 2 1 5 5 C 1.54262 * 110.03245 * 267.16878 * 3 2 1 6 6 C 1.54898 * 104.19214 * 217.10609 * 5 3 2 7 7 C 1.54888 * 102.74725 * 37.94503 * 6 5 3 8 8 C 1.53879 * 110.02891 * 149.99910 * 3 2 1 9 9 H 1.08995 * 110.07269 * 238.59056 * 8 3 2 10 10 C 1.50696 * 110.03269 * 0.02562 * 8 3 2 11 11 O 1.21281 * 120.00406 * 93.44490 * 10 8 3 12 12 N 1.34782 * 119.99894 * 273.44182 * 10 8 3 13 13 C 1.46923 * 120.63289 * 175.58593 * 12 10 8 14 14 C 1.53185 * 108.77547 * 126.38913 * 13 12 10 15 15 C 1.53048 * 109.30993 * 54.64098 * 14 13 12 16 16 C 1.50696 * 109.45708 * 178.61059 * 15 14 13 17 17 H 1.08004 * 120.00720 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99644 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00042 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99778 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47142 * 60.00721 * 20 18 16 22 22 H 1.48500 * 109.46657 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47354 * 300.00267 * 20 18 16 24 24 C 1.53034 * 109.53485 * 298.63327 * 15 14 13 25 25 C 1.46919 * 120.62918 * 355.58998 * 12 10 8 26 26 H 1.09007 * 109.47191 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47069 * 299.99308 * 1 2 3 28 28 H 1.08996 * 109.47373 * 59.99986 * 1 2 3 29 29 H 1.08999 * 110.48731 * 98.43228 * 5 3 2 30 30 H 1.09000 * 110.60045 * 335.84153 * 5 3 2 31 31 H 1.08995 * 110.75623 * 279.62577 * 6 5 3 32 32 H 1.08996 * 110.90939 * 156.32792 * 6 5 3 33 33 H 1.09009 * 110.48317 * 203.37625 * 7 6 5 34 34 H 1.08997 * 110.60083 * 80.79205 * 7 6 5 35 35 H 1.09004 * 109.58405 * 6.60538 * 13 12 10 36 36 H 1.08997 * 109.59266 * 246.18520 * 13 12 10 37 37 H 1.09010 * 109.49929 * 174.58532 * 14 13 12 38 38 H 1.08994 * 109.50285 * 294.65327 * 14 13 12 39 39 H 1.08994 * 109.46012 * 58.65337 * 15 14 13 40 40 H 0.97004 * 119.99824 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.49946 * 181.32365 * 24 15 14 42 42 H 1.09004 * 109.49723 * 301.41099 * 24 15 14 43 43 H 1.08998 * 109.59145 * 113.81941 * 25 12 10 44 44 H 1.09004 * 109.58858 * 353.38978 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3408 2.0126 0.4899 5 6 2.2905 1.7591 -1.4475 6 6 3.6252 2.5390 -1.3494 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2778 0.7229 9 1 3.3587 1.9710 1.5639 10 6 3.6669 -0.1176 1.2073 11 8 4.3207 -0.8718 0.5184 12 7 3.2074 -0.5275 2.4062 13 6 3.4070 -1.9137 2.8505 14 6 4.0778 -1.8983 4.2275 15 6 3.2449 -1.0447 5.1867 16 6 3.8836 -1.0551 6.5516 17 1 4.7926 -1.6140 6.7183 18 6 3.3080 -0.3503 7.5874 19 7 2.2014 0.3307 7.3844 20 14 4.1002 -0.3626 9.2792 21 1 5.4740 0.1937 9.1866 22 1 3.2920 0.4655 10.2100 23 1 4.1638 -1.7570 9.7859 24 6 3.1780 0.3927 4.6660 25 6 2.4971 0.4033 3.2937 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.4931 2.4111 -1.8042 30 1 2.3999 0.8969 -2.1053 31 1 3.4543 3.5535 -0.9894 32 1 4.1391 2.5532 -2.3105 33 1 5.1881 2.3358 0.1623 34 1 4.8833 0.8450 -0.7813 35 1 4.0456 -2.4370 2.1388 36 1 2.4432 -2.4179 2.9190 37 1 4.1445 -2.9165 4.6112 38 1 5.0789 -1.4762 4.1400 39 1 2.2368 -1.4536 5.2546 40 1 1.7963 0.8263 8.1132 41 1 2.6044 1.0054 5.3615 42 1 4.1874 0.7938 4.5744 43 1 1.4590 0.0882 3.3985 44 1 2.5354 1.4089 2.8746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337167756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:35 Heat of formation + Delta-G solvation = -95.315290 kcal Electronic energy + Delta-G solvation = -23665.344650 eV Core-core repulsion = 20388.970170 eV Total energy + Delta-G solvation = -3276.374480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22574 -38.26258 -36.70063 -35.63077 -33.43466 -31.39001 -30.14343 -29.03394 -28.28313 -26.23022 -25.92930 -23.18874 -22.32641 -21.14724 -20.87698 -19.35797 -18.19138 -17.31134 -16.41365 -16.16761 -15.87647 -15.24001 -14.86591 -14.53745 -14.43922 -13.98027 -13.79155 -13.31609 -13.05288 -12.73568 -12.64857 -12.37163 -12.20996 -11.81485 -11.50839 -11.40057 -11.31940 -11.18009 -11.13600 -10.91385 -10.72691 -10.68085 -10.56091 -10.32331 -10.06994 -9.60787 -9.56803 -9.20171 -9.11755 -8.86669 -8.36018 -7.84167 -6.02205 -4.08128 3.16347 3.30235 3.34652 3.38100 3.58430 3.79413 4.41526 4.44880 4.53070 4.85361 5.09395 5.15772 5.25853 5.30095 5.31198 5.34008 5.41932 5.55965 5.57350 5.70582 5.72806 5.78451 5.87650 5.94352 5.96203 6.06245 6.11317 6.17166 6.25112 6.35417 6.38499 6.54413 6.73072 6.98045 7.09327 7.19799 7.23766 7.32355 7.68262 7.94567 8.04837 8.12131 8.42139 8.78421 8.95170 9.56772 11.03203 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.004392 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.130225 B = 6374.241628 C = 6426.423641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.099 3.901 4 H 0.070 0.930 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.118 4.118 9 H 0.102 0.898 10 C 0.539 3.461 11 O -0.558 6.558 12 N -0.595 5.595 13 C 0.116 3.884 14 C -0.123 4.123 15 C 0.050 3.950 16 C -0.511 4.511 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.125 4.125 25 C 0.107 3.893 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.103 0.897 42 H 0.038 0.962 43 H 0.058 0.942 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 5.324 -14.704 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C 0.040 3.960 4 H 0.088 0.912 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.140 4.140 9 H 0.120 0.880 10 C 0.326 3.674 11 O -0.437 6.437 12 N -0.326 5.326 13 C -0.007 4.007 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.550 4.550 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.163 4.163 25 C -0.015 4.015 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.801 4.859 -14.937 15.955 hybrid contribution 0.009 0.367 1.174 1.230 sum -2.792 5.226 -13.763 14.984 Atomic orbital electron populations 1.22764 0.81320 1.02732 0.99633 1.88065 1.19356 1.26755 1.94827 1.22671 0.92973 0.85177 0.95140 0.91243 1.22874 0.97780 1.00511 0.96991 1.22402 0.95495 0.98454 0.99451 1.22363 0.96548 1.00707 0.95453 1.22174 0.95819 0.96481 0.99488 0.88045 1.19847 0.78339 0.88509 0.80659 1.90577 1.40819 1.56238 1.56047 1.48038 1.55868 1.12019 1.16675 1.21611 1.00178 0.81900 0.96982 1.22010 0.99613 1.00784 0.93753 1.18612 0.95291 0.90600 0.92375 1.21194 1.09846 1.29783 0.94141 0.92777 1.24951 0.94880 0.95357 0.98718 1.69830 1.19126 1.32109 1.32142 0.86684 0.79340 0.78040 0.84089 1.20345 1.21329 1.20315 1.22029 0.99257 1.02371 0.92657 1.21986 0.95978 0.91337 0.92226 0.89801 0.93889 0.94403 0.91525 0.90242 0.91387 0.91097 0.91207 0.89209 0.90520 0.92529 0.92329 0.93053 0.95536 0.92982 0.87884 0.94335 0.92325 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.45 16 2 O -0.37 -5.46 8.82 -35.23 -0.31 -5.77 16 3 C 0.10 1.24 3.36 -25.61 -0.09 1.16 16 4 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 5 C -0.14 -1.52 6.56 -25.07 -0.16 -1.69 16 6 C -0.12 -1.18 6.91 -24.73 -0.17 -1.35 16 7 C -0.11 -1.43 6.30 -25.07 -0.16 -1.59 16 8 C -0.12 -1.69 2.54 -90.65 -0.23 -1.92 16 9 H 0.10 1.34 6.08 -51.93 -0.32 1.03 16 10 C 0.54 9.95 5.51 -10.98 -0.06 9.89 16 11 O -0.56 -11.91 14.98 5.56 0.08 -11.82 16 12 N -0.59 -11.22 2.97 -172.78 -0.51 -11.74 16 13 C 0.12 2.25 6.44 -3.72 -0.02 2.22 16 14 C -0.12 -2.62 5.30 -26.61 -0.14 -2.76 16 15 C 0.05 1.20 2.06 -91.73 -0.19 1.01 16 16 C -0.51 -13.74 8.56 -34.44 -0.29 -14.03 16 17 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -24.46 11.30 55.43 0.63 -23.83 16 20 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.12 -2.77 5.15 -26.62 -0.14 -2.91 16 25 C 0.11 1.96 6.32 -3.72 -0.02 1.94 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.45 8.10 -51.93 -0.42 0.03 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.09 1.34 6.79 -51.93 -0.35 0.99 16 35 H 0.08 1.51 7.00 -51.93 -0.36 1.14 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.10 2.53 6.03 -51.93 -0.31 2.21 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.99 5.38 -51.93 -0.28 0.71 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -30.18 339.11 -8.19 -38.37 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.48 Total: 0.82 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.68 Total: -7.01 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.11 Total: -35.57 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.23 Total: -17.59 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.18 -8.19 -38.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337167756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.950 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds