Wall clock time and date at job start Tue Mar 31 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99708 * 2 1 4 4 H 1.09002 * 110.05544 * 28.58621 * 3 2 1 5 5 C 1.54262 * 110.03245 * 267.16878 * 3 2 1 6 6 C 1.54898 * 104.19214 * 217.10609 * 5 3 2 7 7 C 1.54888 * 102.74725 * 37.94503 * 6 5 3 8 8 C 1.53879 * 110.02891 * 149.99910 * 3 2 1 9 9 H 1.08995 * 110.07269 * 238.59056 * 8 3 2 10 10 C 1.50696 * 110.03269 * 0.02562 * 8 3 2 11 11 O 1.21281 * 120.00406 * 93.44490 * 10 8 3 12 12 N 1.34782 * 119.99894 * 273.44182 * 10 8 3 13 13 C 1.46923 * 120.63289 * 175.58593 * 12 10 8 14 14 C 1.53185 * 108.77547 * 126.38913 * 13 12 10 15 15 C 1.53048 * 109.30993 * 54.64098 * 14 13 12 16 16 C 1.50696 * 109.45708 * 178.61059 * 15 14 13 17 17 H 1.08004 * 120.00720 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99644 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00042 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99778 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47142 * 60.00721 * 20 18 16 22 22 H 1.48500 * 109.46657 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47354 * 300.00267 * 20 18 16 24 24 C 1.53034 * 109.53485 * 298.63327 * 15 14 13 25 25 C 1.46919 * 120.62918 * 355.58998 * 12 10 8 26 26 H 1.09007 * 109.47191 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47069 * 299.99308 * 1 2 3 28 28 H 1.08996 * 109.47373 * 59.99986 * 1 2 3 29 29 H 1.08999 * 110.48731 * 98.43228 * 5 3 2 30 30 H 1.09000 * 110.60045 * 335.84153 * 5 3 2 31 31 H 1.08995 * 110.75623 * 279.62577 * 6 5 3 32 32 H 1.08996 * 110.90939 * 156.32792 * 6 5 3 33 33 H 1.09009 * 110.48317 * 203.37625 * 7 6 5 34 34 H 1.08997 * 110.60083 * 80.79205 * 7 6 5 35 35 H 1.09004 * 109.58405 * 6.60538 * 13 12 10 36 36 H 1.08997 * 109.59266 * 246.18520 * 13 12 10 37 37 H 1.09010 * 109.49929 * 174.58532 * 14 13 12 38 38 H 1.08994 * 109.50285 * 294.65327 * 14 13 12 39 39 H 1.08994 * 109.46012 * 58.65337 * 15 14 13 40 40 H 0.97004 * 119.99824 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.49946 * 181.32365 * 24 15 14 42 42 H 1.09004 * 109.49723 * 301.41099 * 24 15 14 43 43 H 1.08998 * 109.59145 * 113.81941 * 25 12 10 44 44 H 1.09004 * 109.58858 * 353.38978 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3408 2.0126 0.4899 5 6 2.2905 1.7591 -1.4475 6 6 3.6252 2.5390 -1.3494 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2778 0.7229 9 1 3.3587 1.9710 1.5639 10 6 3.6669 -0.1176 1.2073 11 8 4.3207 -0.8718 0.5184 12 7 3.2074 -0.5275 2.4062 13 6 3.4070 -1.9137 2.8505 14 6 4.0778 -1.8983 4.2275 15 6 3.2449 -1.0447 5.1867 16 6 3.8836 -1.0551 6.5516 17 1 4.7926 -1.6140 6.7183 18 6 3.3080 -0.3503 7.5874 19 7 2.2014 0.3307 7.3844 20 14 4.1002 -0.3626 9.2792 21 1 5.4740 0.1937 9.1866 22 1 3.2920 0.4655 10.2100 23 1 4.1638 -1.7570 9.7859 24 6 3.1780 0.3927 4.6660 25 6 2.4971 0.4033 3.2937 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.4931 2.4111 -1.8042 30 1 2.3999 0.8969 -2.1053 31 1 3.4543 3.5535 -0.9894 32 1 4.1391 2.5532 -2.3105 33 1 5.1881 2.3358 0.1623 34 1 4.8833 0.8450 -0.7813 35 1 4.0456 -2.4370 2.1388 36 1 2.4432 -2.4179 2.9190 37 1 4.1445 -2.9165 4.6112 38 1 5.0789 -1.4762 4.1400 39 1 2.2368 -1.4536 5.2546 40 1 1.7963 0.8263 8.1132 41 1 2.6044 1.0054 5.3615 42 1 4.1874 0.7938 4.5744 43 1 1.4590 0.0882 3.3985 44 1 2.5354 1.4089 2.8746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337167756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:34 Heat of formation + Delta-G solvation = -112.610510 kcal Electronic energy + Delta-G solvation = -23666.094627 eV Core-core repulsion = 20388.970170 eV Total energy + Delta-G solvation = -3277.124457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52505 -39.50009 -38.24562 -36.66196 -35.29447 -33.14940 -31.81932 -30.19335 -29.17402 -27.92022 -26.96301 -24.88740 -23.96672 -22.53758 -21.72760 -20.91593 -19.57377 -18.74999 -18.16637 -17.30657 -17.29908 -16.50859 -16.31066 -16.01581 -15.54532 -15.23040 -14.91680 -14.79237 -14.70896 -14.46956 -14.10759 -13.82599 -13.39900 -13.29765 -13.10965 -12.80303 -12.54498 -12.41896 -12.36551 -12.27480 -12.13956 -11.95662 -11.89656 -11.71110 -11.54010 -11.41276 -10.99755 -10.89141 -10.57559 -10.48646 -10.37392 -9.45320 -8.07318 -6.20629 1.43318 1.43635 1.51203 1.76277 2.16922 2.44663 2.84307 3.18948 3.50393 3.59305 3.72786 3.99716 4.20170 4.25984 4.30525 4.37752 4.43532 4.45206 4.48218 4.50501 4.57741 4.59348 4.64201 4.75924 4.77773 4.88203 4.88859 4.98904 5.01037 5.05946 5.17880 5.18926 5.22387 5.26984 5.43089 5.47467 5.58813 5.68245 5.98735 6.13650 6.31712 6.39704 6.63513 6.87995 7.32007 7.46878 8.96007 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.004392 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.130225 B = 6374.241628 C = 6426.423641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.094 3.906 4 H 0.093 0.907 5 C -0.139 4.139 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.120 4.120 9 H 0.115 0.885 10 C 0.534 3.466 11 O -0.592 6.592 12 N -0.599 5.599 13 C 0.121 3.879 14 C -0.112 4.112 15 C 0.048 3.952 16 C -0.537 4.537 17 H 0.046 0.954 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.948 3.052 21 H -0.275 1.275 22 H -0.281 1.281 23 H -0.275 1.275 24 C -0.115 4.115 25 C 0.120 3.880 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.002 0.998 40 H 0.262 0.738 41 H 0.082 0.918 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.712 7.087 -15.430 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.325 6.325 3 C 0.036 3.964 4 H 0.111 0.889 5 C -0.177 4.177 6 C -0.148 4.148 7 C -0.153 4.153 8 C -0.141 4.141 9 H 0.133 0.867 10 C 0.324 3.676 11 O -0.473 6.473 12 N -0.330 5.330 13 C -0.002 4.002 14 C -0.151 4.151 15 C 0.029 3.971 16 C -0.575 4.575 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.775 3.225 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.201 1.201 24 C -0.154 4.154 25 C -0.002 4.002 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.020 0.980 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.411 6.629 -15.669 17.352 hybrid contribution 0.203 -0.234 1.411 1.444 sum -3.208 6.395 -14.258 15.953 Atomic orbital electron populations 1.22894 0.79775 1.03145 1.00933 1.88022 1.21223 1.28187 1.95096 1.22881 0.92103 0.85036 0.96351 0.88882 1.22855 0.99093 1.00371 0.95381 1.22407 0.94449 0.98866 0.99071 1.22373 0.96777 1.00252 0.95890 1.22341 0.97738 0.93547 1.00494 0.86712 1.20621 0.77105 0.89984 0.79860 1.90557 1.42215 1.57736 1.56832 1.48109 1.56071 1.11661 1.17161 1.21468 1.00221 0.82911 0.95600 1.21854 0.98607 1.00300 0.94312 1.18578 0.94035 0.92217 0.92271 1.21514 1.09967 1.30171 0.95897 0.93603 1.25610 0.95383 0.95009 1.01881 1.69936 1.19811 1.32252 1.33027 0.85766 0.78558 0.78047 0.80171 1.20049 1.20650 1.20088 1.21805 0.98625 1.00426 0.94524 1.21847 0.95266 0.93012 0.90089 0.89998 0.93285 0.92290 0.88808 0.92073 0.89015 0.90013 0.90164 0.92123 0.90839 0.91822 0.92055 0.94148 0.97978 0.92855 0.90015 0.95397 0.92106 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.85 113.37 1.23 1.81 16 2 O -0.41 -11.28 8.82 -148.98 -1.31 -12.60 16 3 C 0.09 2.12 3.36 31.32 0.11 2.22 16 4 H 0.09 1.64 7.81 -2.39 -0.02 1.62 16 5 C -0.14 -2.53 6.56 31.67 0.21 -2.32 16 6 C -0.11 -1.82 6.91 31.89 0.22 -1.60 16 7 C -0.11 -2.72 6.30 31.67 0.20 -2.52 16 8 C -0.12 -3.20 2.54 -10.82 -0.03 -3.23 16 9 H 0.12 2.70 6.08 -2.39 -0.01 2.69 16 10 C 0.53 19.44 5.51 87.65 0.48 19.93 16 11 O -0.59 -25.55 14.98 -3.03 -0.05 -25.60 16 12 N -0.60 -22.33 2.97 -818.94 -2.43 -24.76 16 13 C 0.12 4.73 6.44 86.36 0.56 5.29 16 14 C -0.11 -4.86 5.30 30.67 0.16 -4.70 16 15 C 0.05 2.33 2.06 -11.51 -0.02 2.31 16 16 C -0.54 -29.33 8.56 25.60 0.22 -29.11 16 17 H 0.05 2.51 7.74 -2.91 -0.02 2.48 16 18 C 0.02 1.09 5.30 84.66 0.45 1.54 16 19 N -0.91 -50.08 11.30 21.45 0.24 -49.83 16 20 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 C -0.12 -5.14 5.15 30.67 0.16 -4.98 16 25 C 0.12 4.26 6.32 86.36 0.55 4.81 16 26 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.06 1.80 6.79 -2.39 -0.02 1.79 16 35 H 0.07 2.93 7.00 -2.39 -0.02 2.92 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.26 13.75 8.31 -92.70 -0.77 12.98 16 41 H 0.08 4.03 6.03 -2.39 -0.01 4.02 16 42 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.10 2.78 5.38 -2.39 -0.01 2.77 16 Total: -1.00 -65.84 339.11 3.92 -61.92 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.96 Total: 16.57 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 4.48 Total: -10.55 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -2.19 Total: -74.59 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -1.36 Total: -38.19 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -65.84 3.92 -61.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337167756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.694 kcal (2) G-P(sol) polarization free energy of solvation -65.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds