Wall clock time and date at job start Tue Mar 31 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00130 * 2 1 4 4 H 1.08998 * 110.05863 * 331.42548 * 3 2 1 5 5 C 1.54271 * 110.03015 * 92.84058 * 3 2 1 6 6 C 1.54887 * 104.19757 * 142.89568 * 5 3 2 7 7 C 1.54893 * 102.74591 * 322.05470 * 6 5 3 8 8 C 1.53879 * 110.03299 * 210.00080 * 3 2 1 9 9 H 1.09002 * 110.02347 * 121.43345 * 8 3 2 10 10 C 1.50693 * 110.07519 * 0.02996 * 8 3 2 11 11 O 1.21291 * 119.99876 * 264.45286 * 10 8 3 12 12 N 1.34773 * 120.00484 * 84.44423 * 10 8 3 13 13 C 1.37099 * 119.99787 * 4.94641 * 12 10 8 14 14 H 1.07998 * 120.00521 * 232.53977 * 13 12 10 15 15 C 1.38951 * 119.99784 * 52.53881 * 13 12 10 16 16 N 1.31416 * 119.99992 * 200.68330 * 15 13 12 17 17 Si 1.86800 * 120.00187 * 20.68820 * 15 13 12 18 18 H 1.48497 * 109.47440 * 94.30789 * 17 15 13 19 19 H 1.48501 * 109.47012 * 214.31036 * 17 15 13 20 20 H 1.48498 * 109.46888 * 334.30625 * 17 15 13 21 21 C 1.46497 * 120.00460 * 184.94292 * 12 10 8 22 22 C 1.54267 * 110.03345 * 237.16974 * 21 12 10 23 23 C 1.54889 * 104.19460 * 217.10235 * 22 21 12 24 24 C 1.54891 * 102.74888 * 37.94777 * 23 22 21 25 25 C 1.53877 * 110.03365 * 120.00243 * 21 12 10 26 26 H 1.08997 * 109.46889 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46435 * 299.99320 * 1 2 3 28 28 H 1.08992 * 109.47182 * 59.99498 * 1 2 3 29 29 H 1.08999 * 110.48355 * 24.21143 * 5 3 2 30 30 H 1.09006 * 110.48566 * 261.57635 * 5 3 2 31 31 H 1.08998 * 110.75348 * 203.74180 * 6 5 3 32 32 H 1.08996 * 110.91618 * 80.44464 * 6 5 3 33 33 H 1.08998 * 110.48753 * 279.26374 * 7 6 5 34 34 H 1.09003 * 110.59681 * 156.67608 * 7 6 5 35 35 H 0.97001 * 119.99800 * 179.97438 * 16 15 13 36 36 H 1.09001 * 110.01683 * 358.61420 * 21 12 10 37 37 H 1.08999 * 110.48806 * 335.78172 * 22 21 12 38 38 H 1.09005 * 110.48459 * 98.42593 * 22 21 12 39 39 H 1.08991 * 110.76000 * 279.63051 * 23 22 21 40 40 H 1.09008 * 110.75587 * 156.25643 * 23 22 21 41 41 H 1.09000 * 110.48685 * 203.37781 * 24 23 22 42 42 H 1.08997 * 110.60273 * 80.78572 * 24 23 22 43 43 H 1.08994 * 110.03469 * 238.57411 * 25 21 12 44 44 H 1.09007 * 110.03270 * 359.95624 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3409 2.0127 -0.4897 5 6 2.2908 1.7589 1.4476 6 6 3.6255 2.5387 1.3495 7 6 4.4267 1.7154 0.3106 8 6 3.3684 1.2777 -0.7229 9 1 3.3580 1.9716 -1.5635 10 6 3.6673 -0.1170 -1.2089 11 8 4.3532 -0.8590 -0.5380 12 7 3.1725 -0.5400 -2.3890 13 6 2.4829 0.3293 -3.1942 14 1 1.5013 0.0647 -3.5588 15 6 3.0469 1.5509 -3.5413 16 7 2.2795 2.5366 -3.9493 17 14 4.8958 1.7918 -3.4282 18 1 5.5128 1.5164 -4.7505 19 1 5.1889 3.1913 -3.0270 20 1 5.4555 0.8595 -2.4169 21 6 3.3715 -1.9286 -2.8114 22 6 4.0884 -1.9680 -4.1768 23 6 3.4333 -3.1616 -4.9154 24 6 1.9484 -3.0547 -4.4879 25 6 2.0109 -2.6195 -3.0092 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 2.4008 0.8952 2.1034 30 1 1.4934 2.4109 1.8045 31 1 4.1378 2.5501 2.3115 32 1 3.4574 3.5542 0.9911 33 1 4.8817 0.8447 0.7828 34 1 5.1894 2.3336 -0.1628 35 1 2.6732 3.3895 -4.1913 36 1 3.9577 -2.4651 -2.0654 37 1 3.9181 -1.0409 -4.7241 38 1 5.1560 -2.1421 -4.0422 39 1 3.8642 -4.1056 -4.5821 40 1 3.5334 -3.0497 -5.9951 41 1 1.4542 -4.0218 -4.5804 42 1 1.4305 -2.3041 -5.0849 43 1 1.9371 -3.4918 -2.3598 44 1 1.2024 -1.9219 -2.7901 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338266913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:41 Heat of formation + Delta-G solvation = -83.089626 kcal Electronic energy + Delta-G solvation = -24845.207635 eV Core-core repulsion = 21569.363300 eV Total energy + Delta-G solvation = -3275.844335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.68926 -37.97743 -36.50978 -35.04071 -34.07222 -31.72896 -28.96975 -28.01081 -27.71315 -26.87028 -25.44925 -24.44412 -21.44382 -20.32490 -20.02690 -19.23207 -18.75024 -17.26738 -15.98531 -15.80785 -15.59377 -14.78712 -14.64714 -14.52263 -14.02024 -13.82303 -13.49183 -13.24427 -13.08939 -12.71107 -12.54516 -12.14684 -11.83922 -11.35724 -11.26074 -10.93585 -10.84170 -10.76597 -10.66613 -10.60204 -10.51258 -10.45510 -10.40500 -10.09199 -10.05211 -10.01242 -9.93243 -9.69509 -8.94358 -8.78776 -8.37167 -7.36654 -6.45403 -4.13030 3.11968 3.23231 3.34353 3.91574 4.14443 4.40664 4.61262 4.88111 5.08694 5.14317 5.32117 5.36486 5.44521 5.56042 5.72416 5.87653 5.92107 6.03137 6.05281 6.07445 6.11989 6.16095 6.18610 6.21629 6.23262 6.27257 6.29617 6.34806 6.40457 6.46961 6.51635 6.55584 6.61371 6.68175 6.68833 6.91644 6.96782 7.04795 7.16284 7.75955 7.89662 7.96708 8.57954 9.07251 9.46587 9.91794 10.64544 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016179 B = 0.009104 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.186530 B = 3074.977505 C = 3685.450011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.114 3.886 4 H 0.070 0.930 5 C -0.146 4.146 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.110 4.110 9 H 0.109 0.891 10 C 0.529 3.471 11 O -0.595 6.595 12 N -0.466 5.466 13 C -0.323 4.323 14 H 0.095 0.905 15 C 0.073 3.927 16 N -0.863 5.863 17 Si 0.840 3.160 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.251 1.251 21 C 0.135 3.865 22 C -0.132 4.132 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.123 4.123 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.273 0.727 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 -2.388 3.928 4.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.056 3.944 4 H 0.088 0.912 5 C -0.184 4.184 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.131 4.131 9 H 0.126 0.874 10 C 0.319 3.681 11 O -0.479 6.479 12 N -0.187 5.187 13 C -0.451 4.451 14 H 0.112 0.888 15 C -0.133 4.133 16 N -0.499 5.499 17 Si 0.664 3.336 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.174 1.174 21 C 0.030 3.970 22 C -0.171 4.171 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.161 4.161 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.233 -2.746 4.172 5.144 hybrid contribution 0.669 0.679 -0.304 1.001 sum -0.563 -2.067 3.867 4.421 Atomic orbital electron populations 1.22644 0.82367 1.01695 0.99314 1.88016 1.18493 1.27117 1.94666 1.22438 0.93641 0.84989 0.93350 0.91167 1.22918 0.97351 1.00061 0.98027 1.22373 0.95815 0.98541 0.98955 1.22418 0.97008 1.00232 0.96074 1.22086 0.94430 0.97659 0.98898 0.87372 1.19862 0.79637 0.88228 0.80396 1.90460 1.42372 1.57630 1.57476 1.43597 1.50830 1.08626 1.15598 1.18724 1.00566 0.96688 1.29079 0.88764 1.25558 0.97290 0.95735 0.94729 1.69749 1.35335 1.02538 1.42299 0.87367 0.87889 0.78565 0.79762 1.20262 1.20517 1.17444 1.21565 0.94907 0.85283 0.95202 1.22692 0.98129 0.99271 0.96977 1.22397 0.96051 0.98033 0.99268 1.22272 0.96305 0.99956 0.96962 1.22353 0.99019 0.99354 0.95378 0.90689 0.95315 0.93700 0.90672 0.91993 0.91647 0.91654 0.89518 0.92420 0.91640 0.90222 0.89713 0.93017 0.92364 0.92288 0.92936 0.91485 0.93019 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.85 101.05 1.10 1.70 16 2 O -0.36 -7.59 8.82 -35.23 -0.31 -7.90 16 3 C 0.11 2.29 3.36 -25.61 -0.09 2.21 16 4 H 0.07 1.41 7.81 -51.93 -0.41 1.01 16 5 C -0.15 -2.41 6.56 -25.07 -0.16 -2.57 16 6 C -0.12 -1.90 6.91 -24.74 -0.17 -2.07 16 7 C -0.12 -2.37 6.29 -25.07 -0.16 -2.52 16 8 C -0.11 -2.46 1.64 -90.66 -0.15 -2.61 16 9 H 0.11 2.60 3.45 -51.93 -0.18 2.42 16 10 C 0.53 13.16 3.10 -10.99 -0.03 13.13 16 11 O -0.60 -16.01 14.89 5.55 0.08 -15.93 16 12 N -0.47 -11.21 1.87 -106.55 -0.20 -11.41 16 13 C -0.32 -8.11 7.35 -14.93 -0.11 -8.22 16 14 H 0.09 2.53 7.41 -52.49 -0.39 2.14 16 15 C 0.07 1.86 3.79 -17.47 -0.07 1.80 16 16 N -0.86 -22.86 13.96 55.50 0.77 -22.09 16 17 Si 0.84 20.33 25.18 -169.99 -4.28 16.05 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.25 -6.35 5.70 56.52 0.32 -6.03 16 21 C 0.13 2.90 3.30 -66.81 -0.22 2.68 16 22 C -0.13 -2.61 6.41 -25.07 -0.16 -2.77 16 23 C -0.12 -1.92 6.91 -24.74 -0.17 -2.09 16 24 C -0.12 -1.91 6.83 -25.07 -0.17 -2.09 16 25 C -0.12 -2.31 6.26 -25.61 -0.16 -2.47 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.83 6.78 -51.93 -0.35 1.48 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 36 H 0.08 1.82 6.95 -51.93 -0.36 1.46 16 37 H 0.08 1.86 6.84 -51.93 -0.35 1.50 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.55 6.98 -51.92 -0.36 1.18 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -28.82 332.58 -7.18 -35.99 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.53 Total: 6.15 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.72 Total: -5.90 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.58 Total: -33.49 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.23 Total: -23.82 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.28 Total: 16.05 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.82 -7.18 -35.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338266913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.096 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds