Wall clock time and date at job start Tue Mar 31 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00285 * 2 1 4 4 H 1.09001 * 110.01543 * 331.39996 * 3 2 1 5 5 C 1.54268 * 110.02805 * 92.83469 * 3 2 1 6 6 C 1.54900 * 104.19184 * 142.89770 * 5 3 2 7 7 C 1.54881 * 102.74840 * 322.05721 * 6 5 3 8 8 C 1.53868 * 110.03529 * 210.00385 * 3 2 1 9 9 H 1.09001 * 110.03401 * 0.04781 * 8 3 2 10 10 C 1.50702 * 110.03573 * 121.43573 * 8 3 2 11 11 O 1.21297 * 119.99580 * 359.97438 * 10 8 3 12 12 N 1.34775 * 120.00492 * 180.02562 * 10 8 3 13 13 C 1.37097 * 120.00405 * 179.97438 * 12 10 8 14 14 H 1.07995 * 119.99774 * 138.23066 * 13 12 10 15 15 C 1.38949 * 119.99937 * 318.24170 * 13 12 10 16 16 N 1.31410 * 120.00058 * 167.79278 * 15 13 12 17 17 Si 1.86804 * 119.99773 * 347.78948 * 15 13 12 18 18 H 1.48498 * 109.47284 * 95.78337 * 17 15 13 19 19 H 1.48499 * 109.47061 * 335.78059 * 17 15 13 20 20 H 1.48498 * 109.47014 * 215.78433 * 17 15 13 21 21 C 1.46506 * 119.99619 * 359.97438 * 12 10 8 22 22 C 1.54259 * 110.03154 * 243.71742 * 21 12 10 23 23 C 1.54889 * 104.19435 * 217.10625 * 22 21 12 24 24 C 1.54891 * 102.74905 * 37.94695 * 23 22 21 25 25 C 1.53875 * 110.02859 * 126.55127 * 21 12 10 26 26 H 1.08999 * 109.46913 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46555 * 299.99363 * 1 2 3 28 28 H 1.08999 * 109.46978 * 59.99337 * 1 2 3 29 29 H 1.08998 * 110.48644 * 261.57284 * 5 3 2 30 30 H 1.08999 * 110.48628 * 24.22077 * 5 3 2 31 31 H 1.08996 * 110.75537 * 80.37880 * 6 5 3 32 32 H 1.09003 * 110.74893 * 203.55620 * 6 5 3 33 33 H 1.09007 * 110.48758 * 279.26342 * 7 6 5 34 34 H 1.09000 * 110.48626 * 156.62641 * 7 6 5 35 35 H 0.97001 * 119.99879 * 179.97438 * 16 15 13 36 36 H 1.09001 * 110.01541 * 5.16319 * 21 12 10 37 37 H 1.08993 * 110.49513 * 335.78815 * 22 21 12 38 38 H 1.09003 * 110.48675 * 98.43274 * 22 21 12 39 39 H 1.09000 * 110.75791 * 279.63127 * 23 22 21 40 40 H 1.09007 * 110.75797 * 156.25876 * 23 22 21 41 41 H 1.09001 * 110.48413 * 203.37865 * 24 23 22 42 42 H 1.09003 * 110.48466 * 80.73265 * 24 23 22 43 43 H 1.08997 * 110.03313 * 238.56948 * 25 21 12 44 44 H 1.09004 * 110.03217 * 0.02562 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3406 2.0120 -0.4903 5 6 2.2907 1.7589 1.4476 6 6 3.6255 2.5387 1.3495 7 6 4.4267 1.7154 0.3107 8 6 3.3683 1.2777 -0.7229 9 1 3.5837 0.2687 -1.0745 10 6 3.3543 2.2370 -1.8850 11 8 2.3580 2.8866 -2.1231 12 7 4.4482 2.3724 -2.6605 13 6 4.4352 3.2447 -3.7181 14 1 5.2954 3.8673 -3.9151 15 6 3.3152 3.3279 -4.5363 16 7 3.1998 4.3172 -5.3935 17 14 1.9737 2.0334 -4.4177 18 1 0.8952 2.5189 -3.5198 19 1 2.5454 0.7768 -3.8704 20 1 1.4142 1.7752 -5.7688 21 6 5.6514 1.5873 -2.3733 22 6 6.8156 2.5248 -1.9923 23 6 8.0620 1.8601 -2.6276 24 6 7.5148 1.3244 -3.9740 25 6 6.0959 0.8240 -3.6333 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.4934 2.4108 1.8043 30 1 2.4008 0.8952 2.1034 31 1 3.4546 3.5532 0.9897 32 1 4.1362 2.5528 2.3124 33 1 4.8818 0.8447 0.7829 34 1 5.1882 2.3356 -0.1622 35 1 2.4181 4.3751 -5.9649 36 1 5.4546 0.8863 -1.5621 37 1 6.6580 3.5186 -2.4111 38 1 6.9228 2.5791 -0.9089 39 1 8.4234 1.0420 -2.0046 40 1 8.8487 2.5957 -2.7957 41 1 8.1322 0.5027 -4.3368 42 1 7.4700 2.1244 -4.7130 43 1 6.1157 -0.2473 -3.4333 44 1 5.4167 1.0381 -4.4585 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338266915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:46 Heat of formation + Delta-G solvation = -79.941999 kcal Electronic energy + Delta-G solvation = -24464.294813 eV Core-core repulsion = 21188.586969 eV Total energy + Delta-G solvation = -3275.707844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.11646 -38.19742 -36.94442 -35.47235 -33.59704 -31.88364 -29.14339 -28.32414 -27.88042 -27.09275 -25.94017 -24.46699 -21.33322 -20.59536 -20.28379 -19.69809 -18.90341 -17.31851 -16.39445 -15.97200 -15.54403 -15.34607 -14.71336 -14.60522 -14.27494 -14.10313 -13.66876 -13.39875 -13.09727 -12.90603 -12.62783 -12.26058 -11.99711 -11.76149 -11.41548 -11.18227 -11.13080 -10.94320 -10.86454 -10.71805 -10.60486 -10.56635 -10.44436 -10.31681 -10.08668 -9.88977 -9.86836 -9.73658 -9.31258 -8.56754 -8.36721 -7.56367 -6.11853 -3.93972 3.29787 3.53852 3.71612 3.84237 4.02003 4.49185 4.64162 4.78057 4.88877 5.09893 5.11272 5.18974 5.29465 5.42295 5.47134 5.54153 5.64094 5.65854 5.72593 5.78881 5.80891 5.86001 5.89865 5.96631 6.02995 6.07422 6.08969 6.13839 6.15432 6.22639 6.29967 6.33078 6.34037 6.39400 6.49216 6.56935 6.77315 6.84841 6.99503 7.49999 7.88357 8.00419 8.80451 8.91584 9.46477 9.81540 10.90807 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.008955 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.400929 B = 3125.865498 C = 4263.108077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.087 3.913 4 H 0.093 0.907 5 C -0.140 4.140 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.108 4.108 9 H 0.095 0.905 10 C 0.452 3.548 11 O -0.547 6.547 12 N -0.451 5.451 13 C -0.335 4.335 14 H 0.096 0.904 15 C 0.081 3.919 16 N -0.874 5.874 17 Si 0.940 3.060 18 H -0.261 1.261 19 H -0.290 1.290 20 H -0.324 1.324 21 C 0.124 3.876 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.131 4.131 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 -7.884 11.019 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.029 3.971 4 H 0.110 0.890 5 C -0.178 4.178 6 C -0.158 4.158 7 C -0.155 4.155 8 C -0.130 4.130 9 H 0.113 0.887 10 C 0.243 3.757 11 O -0.432 6.432 12 N -0.171 5.171 13 C -0.461 4.461 14 H 0.114 0.886 15 C -0.127 4.127 16 N -0.510 5.510 17 Si 0.776 3.224 18 H -0.189 1.189 19 H -0.216 1.216 20 H -0.256 1.256 21 C 0.020 3.980 22 C -0.171 4.171 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.169 4.169 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.426 -7.613 10.744 13.606 hybrid contribution -0.869 -0.474 -0.079 0.993 sum 2.557 -8.087 10.665 13.626 Atomic orbital electron populations 1.22729 0.81657 1.02029 1.00037 1.87844 1.19301 1.28487 1.95012 1.22862 0.94877 0.84683 0.94687 0.88964 1.22824 0.97964 0.99936 0.97058 1.22410 0.95295 0.99429 0.98687 1.22541 0.97314 1.00027 0.95654 1.21809 0.95319 1.00373 0.95522 0.88727 1.20128 0.85592 0.86140 0.83868 1.90363 1.32634 1.49146 1.71101 1.43736 1.10424 1.36725 1.26191 1.18725 1.04591 1.17522 1.05273 0.88614 1.25404 0.98132 0.95916 0.93236 1.69703 1.29545 1.29136 1.22609 0.85749 0.83080 0.79862 0.73732 1.18852 1.21620 1.25553 1.21910 0.86832 0.92538 0.96761 1.22757 0.94040 1.00868 0.99417 1.22434 0.97226 0.99402 0.96847 1.22268 0.95699 1.00170 0.97345 1.22413 0.97222 0.97853 0.99408 0.90130 0.94353 0.93940 0.91747 0.90929 0.90981 0.91481 0.91146 0.89880 0.91962 0.90412 0.89895 0.92246 0.92160 0.92077 0.92650 0.91199 0.92799 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.39 -6.79 10.26 -35.23 -0.36 -7.15 16 3 C 0.09 1.57 2.98 -25.62 -0.08 1.49 16 4 H 0.09 1.93 6.05 -51.93 -0.31 1.61 16 5 C -0.14 -2.03 6.56 -25.07 -0.16 -2.20 16 6 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 7 C -0.12 -1.79 5.00 -25.07 -0.13 -1.91 16 8 C -0.11 -2.06 2.21 -90.65 -0.20 -2.26 16 9 H 0.09 1.78 7.45 -51.93 -0.39 1.39 16 10 C 0.45 10.74 4.96 -10.99 -0.05 10.68 16 11 O -0.55 -15.04 9.91 5.54 0.05 -14.98 16 12 N -0.45 -10.56 2.16 -106.54 -0.23 -10.79 16 13 C -0.34 -9.19 8.04 -14.93 -0.12 -9.31 16 14 H 0.10 2.75 7.14 -52.49 -0.37 2.37 16 15 C 0.08 2.38 5.05 -17.47 -0.09 2.29 16 16 N -0.87 -26.76 13.96 55.50 0.77 -25.98 16 17 Si 0.94 25.91 24.22 -169.99 -4.12 21.79 16 18 H -0.26 -7.53 6.26 56.52 0.35 -7.18 16 19 H -0.29 -7.80 6.86 56.52 0.39 -7.42 16 20 H -0.32 -8.84 7.11 56.52 0.40 -8.43 16 21 C 0.12 2.29 2.26 -66.81 -0.15 2.14 16 22 C -0.13 -2.15 5.90 -25.08 -0.15 -2.30 16 23 C -0.12 -1.66 6.91 -24.74 -0.17 -1.83 16 24 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 25 C -0.13 -2.33 6.24 -25.61 -0.16 -2.49 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.31 4.52 -51.93 -0.23 1.07 16 35 H 0.27 7.88 8.31 -40.82 -0.34 7.55 16 36 H 0.08 1.29 4.92 -51.93 -0.26 1.04 16 37 H 0.08 1.57 6.71 -51.93 -0.35 1.22 16 38 H 0.06 0.84 6.88 -51.93 -0.36 0.49 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.82 7.12 -51.93 -0.37 1.45 16 LS Contribution 326.27 15.07 4.92 4.92 Total: -1.00 -32.58 326.27 -7.00 -39.58 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.33 Total: 0.60 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.70 Total: -7.97 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.54 Total: -36.78 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.31 Total: -22.13 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -4.12 Total: 21.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.58 -7.00 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338266915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.366 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds