Wall clock time and date at job start Tue Mar 31 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00058 * 2 1 4 4 H 1.08997 * 110.02013 * 28.60519 * 3 2 1 5 5 C 1.54272 * 110.07306 * 267.19230 * 3 2 1 6 6 C 1.54892 * 104.19332 * 264.30293 * 5 3 2 7 7 C 1.54887 * 102.74841 * 322.05570 * 6 5 3 8 8 C 1.53871 * 110.03722 * 149.99968 * 3 2 1 9 9 H 1.09005 * 110.02827 * 359.97438 * 8 3 2 10 10 C 1.50699 * 110.03563 * 238.61689 * 8 3 2 11 11 O 1.21276 * 119.99949 * 329.24513 * 10 8 3 12 12 N 1.34779 * 120.00102 * 149.23808 * 10 8 3 13 13 C 1.46508 * 119.99873 * 5.30994 * 12 10 8 14 14 C 1.50696 * 109.47124 * 269.99921 * 13 12 10 15 15 H 1.07999 * 120.00202 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00034 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99840 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99913 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47062 * 90.00718 * 18 16 14 20 20 H 1.48507 * 109.46857 * 210.00128 * 18 16 14 21 21 H 1.48490 * 109.47699 * 330.00427 * 18 16 14 22 22 C 1.46495 * 120.00054 * 185.31555 * 12 10 8 23 23 C 1.53002 * 109.46704 * 270.49769 * 22 12 10 24 24 C 1.52997 * 117.50063 * 243.74537 * 23 22 12 25 25 C 1.53007 * 117.49924 * 175.08355 * 23 22 12 26 26 H 1.09004 * 109.47310 * 299.99961 * 1 2 3 27 27 H 1.08992 * 109.47541 * 60.00356 * 1 2 3 28 28 H 1.09009 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.08998 * 110.48455 * 22.97720 * 5 3 2 30 30 H 1.08993 * 110.48962 * 145.62184 * 5 3 2 31 31 H 1.08997 * 110.75632 * 80.36992 * 6 5 3 32 32 H 1.08999 * 110.75195 * 203.73692 * 6 5 3 33 33 H 1.09002 * 110.48676 * 279.26694 * 7 6 5 34 34 H 1.09000 * 110.48466 * 156.62532 * 7 6 5 35 35 H 1.08997 * 109.47077 * 29.99990 * 13 12 10 36 36 H 1.08998 * 109.46688 * 149.99803 * 13 12 10 37 37 H 0.96998 * 120.00108 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47265 * 30.49584 * 22 12 10 39 39 H 1.08993 * 109.47454 * 150.50253 * 22 12 10 40 40 H 1.09007 * 115.55016 * 29.41991 * 23 22 12 41 41 H 1.08993 * 117.49835 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.49745 * 145.02445 * 24 23 22 43 43 H 1.08995 * 117.49712 * 214.98051 * 25 23 22 44 44 H 1.08997 * 117.49444 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4903 5 6 2.2904 1.7602 -1.4473 6 6 3.7774 1.3941 -1.6793 7 6 4.4264 1.7167 -0.3104 8 6 3.3683 1.2778 0.7228 9 1 3.5838 0.2687 1.0740 10 6 3.3538 2.2361 1.8857 11 8 2.6755 3.2402 1.8356 12 7 4.0945 1.9773 2.9816 13 6 5.0022 0.8274 2.9973 14 6 4.2698 -0.3836 3.5152 15 1 3.2320 -0.3048 3.8033 16 6 4.9245 -1.5925 3.6201 17 7 6.1882 -1.6887 3.2688 18 14 4.0169 -3.0934 4.2627 19 1 3.3878 -3.8151 3.1275 20 1 4.9757 -3.9943 4.9515 21 1 2.9658 -2.6643 5.2198 22 6 3.9919 2.8456 4.1570 23 6 5.0071 3.9843 4.0399 24 6 6.1198 4.0492 5.0880 25 6 4.9791 5.0695 5.1182 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.6513 1.2216 -2.1469 30 1 2.1426 2.8357 -1.5446 31 1 3.8821 0.3354 -1.9165 32 1 4.2090 2.0120 -2.4667 33 1 4.6236 2.7852 -0.2241 34 1 5.3461 1.1463 -0.1805 35 1 5.3582 0.6317 1.9859 36 1 5.8511 1.0435 3.6459 37 1 6.6489 -2.5390 3.3429 38 1 2.9857 3.2606 4.2154 39 1 4.1985 2.2657 5.0564 40 1 5.2545 4.2910 3.0236 41 1 6.1289 3.2805 5.8607 42 1 7.0992 4.3989 4.7613 43 1 5.2084 6.0899 4.8113 44 1 4.2370 4.9724 5.9106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346799050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:28 Heat of formation + Delta-G solvation = -71.134809 kcal Electronic energy + Delta-G solvation = -23492.810594 eV Core-core repulsion = 20217.484659 eV Total energy + Delta-G solvation = -3275.325935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.84518 -38.06597 -36.82754 -35.25184 -34.66570 -32.44152 -29.37163 -27.93785 -27.63395 -26.17607 -25.62792 -22.98386 -22.07479 -21.12778 -20.49592 -19.99141 -18.09965 -17.02752 -16.53534 -15.99969 -15.51046 -15.31785 -14.95486 -14.49503 -14.44010 -14.27163 -13.73330 -13.53415 -13.11998 -12.70186 -12.29364 -12.04897 -11.96188 -11.59254 -11.44243 -11.28929 -11.19295 -11.14331 -10.94968 -10.89429 -10.84499 -10.63439 -10.39274 -10.26840 -10.11839 -10.03775 -9.69949 -9.51084 -9.24875 -8.93695 -8.51361 -7.70976 -6.14440 -4.21313 3.27157 3.31863 3.33976 3.39144 3.75314 4.13100 4.28754 4.40898 4.86446 4.95920 5.08015 5.18943 5.22930 5.26123 5.33467 5.50237 5.56223 5.59135 5.72999 5.79194 5.81581 5.85713 5.86281 5.97166 5.99048 6.11776 6.14070 6.16134 6.16792 6.22555 6.27384 6.37304 6.43595 6.49087 6.59502 6.74470 6.83644 7.23711 7.56610 7.62187 7.80414 8.09307 8.36107 8.82865 9.03071 9.46568 10.92209 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009562 B = 0.008469 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.602220 B = 3305.422322 C = 5208.277775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.097 3.903 4 H 0.075 0.925 5 C -0.141 4.141 6 C -0.117 4.117 7 C -0.105 4.105 8 C -0.114 4.114 9 H 0.129 0.871 10 C 0.526 3.474 11 O -0.577 6.577 12 N -0.589 5.589 13 C 0.238 3.762 14 C -0.536 4.536 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.891 5.891 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.151 3.849 23 C -0.155 4.155 24 C -0.179 4.179 25 C -0.181 4.181 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.265 0.735 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 7.040 -4.584 9.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C 0.039 3.961 4 H 0.093 0.907 5 C -0.179 4.179 6 C -0.155 4.155 7 C -0.144 4.144 8 C -0.135 4.135 9 H 0.147 0.853 10 C 0.314 3.686 11 O -0.459 6.459 12 N -0.318 5.318 13 C 0.118 3.882 14 C -0.575 4.575 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.529 5.529 18 Si 0.723 3.277 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.027 3.973 23 C -0.174 4.174 24 C -0.216 4.216 25 C -0.219 4.219 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.237 7.231 -4.584 9.553 hybrid contribution -0.493 -0.782 0.458 1.031 sum -4.730 6.449 -4.126 9.000 Atomic orbital electron populations 1.22724 0.81950 1.02210 0.99526 1.87974 1.18858 1.27885 1.94850 1.22637 0.94370 0.84354 0.94773 0.90657 1.22826 0.97476 1.00886 0.96720 1.22434 0.94761 1.01558 0.96715 1.22227 0.97768 1.01089 0.93268 1.21977 0.94838 1.02756 0.93976 0.85301 1.20311 0.78703 0.85718 0.83854 1.90563 1.44437 1.28902 1.81984 1.48185 1.42146 1.28773 1.12716 1.19467 0.88497 0.81640 0.98619 1.21481 0.97981 0.93757 1.44275 0.92158 1.24912 0.94797 0.98831 0.95075 1.69921 1.09497 1.26010 1.47455 0.86538 0.79517 0.82521 0.79174 1.20327 1.21183 1.19890 1.20840 0.97755 0.89655 0.89012 1.22756 1.00415 0.98869 0.95388 1.23030 0.93863 1.02160 1.02505 1.22895 1.01997 0.94929 1.02071 0.94245 0.94596 0.90000 0.91336 0.90998 0.90940 0.91724 0.91699 0.90346 0.94239 0.94484 0.92582 0.90907 0.90228 0.88176 0.88590 0.89304 0.89314 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.85 10.25 -35.23 -0.36 -7.21 16 3 C 0.10 1.71 2.90 -25.61 -0.07 1.64 16 4 H 0.08 1.40 6.51 -51.93 -0.34 1.07 16 5 C -0.14 -2.06 6.57 -25.07 -0.16 -2.23 16 6 C -0.12 -1.67 6.91 -24.74 -0.17 -1.85 16 7 C -0.11 -1.77 6.06 -25.07 -0.15 -1.92 16 8 C -0.11 -2.24 2.20 -90.66 -0.20 -2.44 16 9 H 0.13 2.90 6.00 -51.93 -0.31 2.59 16 10 C 0.53 11.17 6.56 -10.98 -0.07 11.10 16 11 O -0.58 -12.97 15.38 5.56 0.09 -12.89 16 12 N -0.59 -12.59 2.46 -175.06 -0.43 -13.02 16 13 C 0.24 5.65 4.75 -5.19 -0.02 5.63 16 14 C -0.54 -14.03 8.64 -34.44 -0.30 -14.33 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -24.55 13.29 55.43 0.74 -23.81 16 18 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 C 0.15 2.86 5.64 -4.04 -0.02 2.84 16 23 C -0.15 -2.58 6.01 -90.62 -0.54 -3.12 16 24 C -0.18 -2.60 10.18 -26.69 -0.27 -2.87 16 25 C -0.18 -2.47 10.26 -26.69 -0.27 -2.75 16 26 H 0.04 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 29 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.07 7.85 -51.93 -0.41 0.67 16 34 H 0.08 1.33 7.67 -51.93 -0.40 0.93 16 35 H 0.04 0.97 6.04 -51.93 -0.31 0.66 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.07 1.39 7.52 -51.93 -0.39 1.00 16 39 H 0.08 1.50 7.80 -51.93 -0.41 1.09 16 40 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 41 H 0.10 1.40 8.03 -51.93 -0.42 0.99 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 356.26 15.07 5.37 5.37 Total: -1.00 -28.87 356.26 -8.48 -37.35 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.59 Total: 5.39 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -1.27 Total: -7.05 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.31 Total: -36.83 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.28 Total: -20.09 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.87 -8.48 -37.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346799050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.788 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds