Wall clock time and date at job start Tue Mar 31 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00058 * 2 1 4 4 H 1.08997 * 110.02013 * 28.60519 * 3 2 1 5 5 C 1.54272 * 110.07306 * 267.19230 * 3 2 1 6 6 C 1.54892 * 104.19332 * 264.30293 * 5 3 2 7 7 C 1.54887 * 102.74841 * 322.05570 * 6 5 3 8 8 C 1.53871 * 110.03722 * 149.99968 * 3 2 1 9 9 H 1.09005 * 110.02827 * 359.97438 * 8 3 2 10 10 C 1.50699 * 110.03563 * 238.61689 * 8 3 2 11 11 O 1.21276 * 119.99949 * 329.24513 * 10 8 3 12 12 N 1.34779 * 120.00102 * 149.23808 * 10 8 3 13 13 C 1.46508 * 119.99873 * 5.30994 * 12 10 8 14 14 C 1.50696 * 109.47124 * 269.99921 * 13 12 10 15 15 H 1.07999 * 120.00202 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00034 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99840 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99913 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47062 * 90.00718 * 18 16 14 20 20 H 1.48507 * 109.46857 * 210.00128 * 18 16 14 21 21 H 1.48490 * 109.47699 * 330.00427 * 18 16 14 22 22 C 1.46495 * 120.00054 * 185.31555 * 12 10 8 23 23 C 1.53002 * 109.46704 * 270.49769 * 22 12 10 24 24 C 1.52997 * 117.50063 * 243.74537 * 23 22 12 25 25 C 1.53007 * 117.49924 * 175.08355 * 23 22 12 26 26 H 1.09004 * 109.47310 * 299.99961 * 1 2 3 27 27 H 1.08992 * 109.47541 * 60.00356 * 1 2 3 28 28 H 1.09009 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.08998 * 110.48455 * 22.97720 * 5 3 2 30 30 H 1.08993 * 110.48962 * 145.62184 * 5 3 2 31 31 H 1.08997 * 110.75632 * 80.36992 * 6 5 3 32 32 H 1.08999 * 110.75195 * 203.73692 * 6 5 3 33 33 H 1.09002 * 110.48676 * 279.26694 * 7 6 5 34 34 H 1.09000 * 110.48466 * 156.62532 * 7 6 5 35 35 H 1.08997 * 109.47077 * 29.99990 * 13 12 10 36 36 H 1.08998 * 109.46688 * 149.99803 * 13 12 10 37 37 H 0.96998 * 120.00108 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47265 * 30.49584 * 22 12 10 39 39 H 1.08993 * 109.47454 * 150.50253 * 22 12 10 40 40 H 1.09007 * 115.55016 * 29.41991 * 23 22 12 41 41 H 1.08993 * 117.49835 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.49745 * 145.02445 * 24 23 22 43 43 H 1.08995 * 117.49712 * 214.98051 * 25 23 22 44 44 H 1.08997 * 117.49444 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4903 5 6 2.2904 1.7602 -1.4473 6 6 3.7774 1.3941 -1.6793 7 6 4.4264 1.7167 -0.3104 8 6 3.3683 1.2778 0.7228 9 1 3.5838 0.2687 1.0740 10 6 3.3538 2.2361 1.8857 11 8 2.6755 3.2402 1.8356 12 7 4.0945 1.9773 2.9816 13 6 5.0022 0.8274 2.9973 14 6 4.2698 -0.3836 3.5152 15 1 3.2320 -0.3048 3.8033 16 6 4.9245 -1.5925 3.6201 17 7 6.1882 -1.6887 3.2688 18 14 4.0169 -3.0934 4.2627 19 1 3.3878 -3.8151 3.1275 20 1 4.9757 -3.9943 4.9515 21 1 2.9658 -2.6643 5.2198 22 6 3.9919 2.8456 4.1570 23 6 5.0071 3.9843 4.0399 24 6 6.1198 4.0492 5.0880 25 6 4.9791 5.0695 5.1182 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.6513 1.2216 -2.1469 30 1 2.1426 2.8357 -1.5446 31 1 3.8821 0.3354 -1.9165 32 1 4.2090 2.0120 -2.4667 33 1 4.6236 2.7852 -0.2241 34 1 5.3461 1.1463 -0.1805 35 1 5.3582 0.6317 1.9859 36 1 5.8511 1.0435 3.6459 37 1 6.6489 -2.5390 3.3429 38 1 2.9857 3.2606 4.2154 39 1 4.1985 2.2657 5.0564 40 1 5.2545 4.2910 3.0236 41 1 6.1289 3.2805 5.8607 42 1 7.0992 4.3989 4.7613 43 1 5.2084 6.0899 4.8113 44 1 4.2370 4.9724 5.9106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346799050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:26 Heat of formation + Delta-G solvation = -86.338961 kcal Electronic energy + Delta-G solvation = -23493.469896 eV Core-core repulsion = 20217.484659 eV Total energy + Delta-G solvation = -3275.985237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.42487 -39.47034 -38.18703 -36.61149 -36.40941 -34.43226 -30.80428 -29.49406 -29.20016 -27.63014 -26.98966 -24.93203 -23.22540 -22.56648 -21.76550 -21.35314 -19.72806 -18.69731 -18.41187 -17.60843 -17.01820 -16.68270 -16.28920 -16.19661 -16.01125 -15.67678 -15.04184 -14.86408 -14.54851 -14.37174 -14.02221 -13.64451 -13.44028 -13.28054 -12.92219 -12.72520 -12.64003 -12.55886 -12.41599 -12.35537 -12.29385 -12.16295 -11.97020 -11.72926 -11.61781 -11.49991 -11.35222 -10.83824 -10.71040 -10.54141 -10.48612 -9.49266 -8.20383 -6.34214 1.39824 1.41870 1.50269 1.66615 2.18929 2.41378 2.88793 2.96998 3.10071 3.51212 3.63344 3.77702 3.90422 4.00622 4.09527 4.17855 4.32247 4.37270 4.43190 4.46156 4.52815 4.61482 4.69730 4.73179 4.74938 4.76763 4.80124 4.82707 4.91630 4.95414 5.00441 5.03320 5.13435 5.14820 5.24117 5.25541 5.25979 5.40788 5.65716 5.84034 6.05349 6.32388 6.53833 6.79763 7.26596 7.39398 8.85207 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009562 B = 0.008469 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.602220 B = 3305.422322 C = 5208.277775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.097 3.903 4 H 0.061 0.939 5 C -0.133 4.133 6 C -0.109 4.109 7 C -0.103 4.103 8 C -0.117 4.117 9 H 0.094 0.906 10 C 0.522 3.478 11 O -0.591 6.591 12 N -0.594 5.594 13 C 0.257 3.743 14 C -0.545 4.545 15 H 0.047 0.953 16 C 0.025 3.975 17 N -0.916 5.916 18 Si 0.952 3.048 19 H -0.276 1.276 20 H -0.278 1.278 21 H -0.272 1.272 22 C 0.150 3.850 23 C -0.180 4.180 24 C -0.174 4.174 25 C -0.156 4.156 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.022 0.978 37 H 0.268 0.732 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 7.506 -5.170 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.039 3.961 4 H 0.079 0.921 5 C -0.170 4.170 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.138 4.138 9 H 0.113 0.887 10 C 0.311 3.689 11 O -0.474 6.474 12 N -0.323 5.323 13 C 0.137 3.863 14 C -0.583 4.583 15 H 0.065 0.935 16 C -0.175 4.175 17 N -0.555 5.555 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.197 1.197 22 C 0.027 3.973 23 C -0.200 4.200 24 C -0.211 4.211 25 C -0.193 4.193 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.767 7.709 -5.161 10.430 hybrid contribution -0.359 -0.912 0.681 1.193 sum -5.126 6.797 -4.481 9.621 Atomic orbital electron populations 1.22946 0.79926 1.03652 1.00480 1.87928 1.21165 1.28134 1.95117 1.22637 0.92808 0.84109 0.96543 0.92078 1.22798 0.97874 1.01711 0.94639 1.22431 0.94397 1.02091 0.95713 1.22230 0.96817 1.00903 0.94195 1.22000 0.97318 1.00203 0.94263 0.88729 1.20647 0.78198 0.85853 0.84169 1.90537 1.44943 1.29588 1.82303 1.48192 1.41841 1.28537 1.13683 1.19055 0.88128 0.81860 0.97303 1.21609 0.97462 0.94915 1.44342 0.93455 1.25584 0.95486 1.01241 0.95230 1.69999 1.10549 1.26793 1.48163 0.85643 0.78539 0.79445 0.78612 1.20145 1.20288 1.19691 1.20916 0.98373 0.90027 0.87953 1.22554 1.01670 0.99981 0.95753 1.23091 0.94341 1.02506 1.01124 1.23017 1.01114 0.95022 1.00141 0.94789 0.92118 0.88382 0.89428 0.89883 0.91122 0.88701 0.91505 0.91205 0.95320 0.96007 0.92302 0.91439 0.90667 0.89616 0.88860 0.88042 0.87324 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.85 113.37 1.23 1.93 16 2 O -0.40 -14.57 10.25 -148.98 -1.53 -16.10 16 3 C 0.10 3.42 2.90 31.32 0.09 3.51 16 4 H 0.06 2.29 6.51 -2.39 -0.02 2.28 16 5 C -0.13 -3.60 6.57 31.67 0.21 -3.39 16 6 C -0.11 -2.91 6.91 31.89 0.22 -2.69 16 7 C -0.10 -3.47 6.06 31.67 0.19 -3.28 16 8 C -0.12 -4.67 2.20 -10.82 -0.02 -4.70 16 9 H 0.09 4.46 6.00 -2.38 -0.01 4.44 16 10 C 0.52 22.84 6.56 87.66 0.57 23.41 16 11 O -0.59 -27.00 15.38 -3.02 -0.05 -27.05 16 12 N -0.59 -26.30 2.46 -826.17 -2.03 -28.33 16 13 C 0.26 12.73 4.75 85.63 0.41 13.14 16 14 C -0.54 -29.29 8.64 25.60 0.22 -29.07 16 15 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 16 C 0.03 1.36 5.46 84.65 0.46 1.82 16 17 N -0.92 -51.10 13.29 21.45 0.28 -50.82 16 18 Si 0.95 43.05 29.54 68.60 2.03 45.07 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 C 0.15 5.83 5.64 86.38 0.49 6.32 16 23 C -0.18 -5.99 6.01 -10.79 -0.06 -6.06 16 24 C -0.17 -4.87 10.18 30.62 0.31 -4.56 16 25 C -0.16 -3.95 10.26 30.62 0.31 -3.64 16 26 H 0.03 0.93 8.10 -2.39 -0.02 0.91 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.09 2.06 8.07 -2.39 -0.02 2.04 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 2.19 7.85 -2.39 -0.02 2.18 16 34 H 0.07 2.42 7.67 -2.39 -0.02 2.41 16 35 H 0.03 1.48 6.04 -2.39 -0.01 1.46 16 36 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 37 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 38 H 0.07 2.64 7.52 -2.39 -0.02 2.63 16 39 H 0.07 2.92 7.80 -2.39 -0.02 2.90 16 40 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 42 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -62.40 356.26 4.30 -58.10 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.96 Total: 26.37 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.63 Total: -7.25 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -1.74 Total: -79.15 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -1.57 Total: -43.15 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -62.40 4.30 -58.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346799050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.236 kcal (2) G-P(sol) polarization free energy of solvation -62.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds