Wall clock time and date at job start Tue Mar 31 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 113.99985 * 2 1 4 4 H 1.09000 * 110.01813 * 330.69881 * 3 2 1 5 5 C 1.54271 * 110.03066 * 92.09334 * 3 2 1 6 6 C 1.54961 * 104.15958 * 142.86525 * 5 3 2 7 7 C 1.54891 * 102.77943 * 322.10639 * 6 5 3 8 8 C 1.53874 * 110.03174 * 209.30604 * 3 2 1 9 9 H 1.09003 * 110.02749 * 121.43325 * 8 3 2 10 10 C 1.50694 * 110.03425 * 0.04965 * 8 3 2 11 11 O 1.21281 * 120.00469 * 270.15465 * 10 8 3 12 12 N 1.34781 * 119.99838 * 90.15286 * 10 8 3 13 13 C 1.46503 * 120.00025 * 4.60581 * 12 10 8 14 14 C 1.50690 * 109.47180 * 90.00093 * 13 12 10 15 15 H 1.08004 * 120.00210 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00307 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99462 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00460 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47572 * 119.99965 * 18 16 14 21 21 H 1.48509 * 109.46852 * 240.00135 * 18 16 14 22 22 C 1.46504 * 119.99749 * 184.60579 * 12 10 8 23 23 C 1.53003 * 109.47111 * 93.75819 * 22 12 10 24 24 C 1.52993 * 117.49879 * 243.99860 * 23 22 12 25 25 C 1.52996 * 117.49888 * 175.33702 * 23 22 12 26 26 H 1.09004 * 109.47297 * 299.99992 * 1 2 3 27 27 H 1.09001 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47291 * 60.00133 * 1 2 3 29 29 H 1.09001 * 110.48311 * 261.57285 * 5 3 2 30 30 H 1.08991 * 110.49107 * 24.21483 * 5 3 2 31 31 H 1.09004 * 110.76272 * 203.77569 * 6 5 3 32 32 H 1.09006 * 110.88297 * 80.49781 * 6 5 3 33 33 H 1.08993 * 110.48579 * 279.24500 * 7 6 5 34 34 H 1.09001 * 110.59887 * 156.64710 * 7 6 5 35 35 H 1.09004 * 109.46765 * 210.00655 * 13 12 10 36 36 H 1.08999 * 109.46613 * 329.99928 * 13 12 10 37 37 H 0.97005 * 119.99960 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.46802 * 213.75261 * 22 12 10 39 39 H 1.08998 * 109.47377 * 333.75797 * 22 12 10 40 40 H 1.09004 * 115.54847 * 29.66645 * 23 22 12 41 41 H 1.09000 * 117.49759 * 359.97438 * 24 23 22 42 42 H 1.09001 * 117.50439 * 145.02078 * 24 23 22 43 43 H 1.09001 * 117.49605 * 214.97843 * 25 23 22 44 44 H 1.08996 * 117.50104 * 359.97034 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3460 2.0096 -0.5012 5 6 2.2734 1.7667 1.4484 6 6 3.6103 2.5455 1.3612 7 6 4.4231 1.7171 0.3354 8 6 3.3762 1.2742 -0.7076 9 1 3.3752 1.9639 -1.5517 10 6 3.6793 -0.1231 -1.1835 11 8 4.2683 -0.8964 -0.4582 12 7 3.2957 -0.5136 -2.4151 13 6 2.6746 0.4489 -3.3285 14 6 3.7429 1.1233 -4.1499 15 1 4.7807 0.8609 -4.0063 16 6 3.3955 2.0745 -5.0855 17 7 2.1316 2.3929 -5.2613 18 14 4.7196 2.9101 -6.1042 19 1 6.0511 2.3781 -5.7176 20 1 4.4785 2.6425 -7.5448 21 1 4.6821 4.3744 -5.8596 22 6 3.4998 -1.9006 -2.8405 23 6 2.2341 -2.7124 -2.5575 24 6 2.3374 -3.8503 -1.5402 25 6 2.2067 -4.1666 -3.0322 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.4719 2.4204 1.7922 30 1 2.3757 0.9066 2.1101 31 1 4.1119 2.5617 2.3288 32 1 3.4462 3.5593 0.9958 33 1 4.8727 0.8488 0.8169 34 1 5.1909 2.3331 -0.1327 35 1 1.9825 -0.0724 -3.9898 36 1 2.1319 1.1983 -2.7523 37 1 1.8871 3.0625 -5.9193 38 1 3.7158 -1.9250 -3.9085 39 1 4.3372 -2.3299 -2.2904 40 1 1.2991 -2.1533 -2.5941 41 1 3.3072 -4.0210 -1.0727 42 1 1.4702 -4.0403 -0.9077 43 1 1.2535 -4.5643 -3.3806 44 1 3.0901 -4.5449 -3.5464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346799051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:31 Heat of formation + Delta-G solvation = -68.047880 kcal Electronic energy + Delta-G solvation = -23929.542735 eV Core-core repulsion = 20654.350658 eV Total energy + Delta-G solvation = -3275.192076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.75444 -37.88710 -36.68339 -35.33554 -34.53378 -32.41794 -29.33931 -27.94097 -27.58830 -26.07720 -25.51754 -22.94066 -21.98708 -21.18046 -20.54520 -19.81746 -18.03641 -16.98939 -16.42968 -15.89511 -15.78231 -15.06257 -14.85416 -14.40611 -14.35680 -14.08871 -13.89684 -13.41623 -13.07278 -12.79041 -12.33009 -12.13870 -11.83942 -11.54385 -11.20920 -11.18008 -11.15105 -11.08984 -10.93124 -10.83892 -10.80062 -10.73273 -10.36921 -10.26231 -10.10886 -9.97713 -9.63697 -9.44109 -9.20891 -8.79287 -8.52372 -7.53747 -6.16626 -4.24032 3.21684 3.30490 3.35211 3.60629 3.98538 4.13046 4.30861 4.37648 4.85539 4.92213 5.15688 5.18203 5.25667 5.35432 5.43379 5.46234 5.60001 5.62187 5.68843 5.82199 5.87205 5.91787 5.92910 5.95800 6.00334 6.04909 6.10466 6.19721 6.25794 6.32084 6.39653 6.42328 6.46807 6.49038 6.72163 6.77713 6.92297 7.25145 7.54897 7.68921 7.81655 8.10629 8.53051 8.85593 9.25399 9.45225 10.89423 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.007920 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.222559 B = 3534.347347 C = 4901.817813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.101 3.899 4 H 0.069 0.931 5 C -0.143 4.143 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.115 4.115 9 H 0.116 0.884 10 C 0.549 3.451 11 O -0.571 6.571 12 N -0.591 5.591 13 C 0.242 3.758 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.892 5.892 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.151 3.849 23 C -0.151 4.151 24 C -0.172 4.172 25 C -0.185 4.185 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 -2.982 8.897 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C 0.042 3.958 4 H 0.087 0.913 5 C -0.181 4.181 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.137 4.137 9 H 0.134 0.866 10 C 0.337 3.663 11 O -0.452 6.452 12 N -0.320 5.320 13 C 0.122 3.878 14 C -0.575 4.575 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.027 3.973 23 C -0.170 4.170 24 C -0.209 4.209 25 C -0.223 4.223 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.462 -3.429 9.125 10.054 hybrid contribution 0.170 0.856 -0.865 1.228 sum -2.292 -2.573 8.260 8.950 Atomic orbital electron populations 1.22711 0.81979 1.02158 0.99548 1.88060 1.18799 1.27045 1.94795 1.22670 0.93521 0.84901 0.94671 0.91322 1.22886 0.97671 1.00208 0.97345 1.22403 0.95504 0.98614 0.99239 1.22329 0.96865 1.00250 0.95488 1.22125 0.94578 0.97157 0.99793 0.86571 1.19774 0.77257 0.88358 0.80927 1.90517 1.43530 1.55441 1.55720 1.47974 1.59955 1.09878 1.14217 1.19328 0.93343 0.87097 0.88081 1.21612 0.93982 1.21713 1.20201 0.92074 1.24940 0.95495 0.96570 0.96823 1.69940 1.15845 1.32444 1.34810 0.86494 0.82040 0.79262 0.80028 1.19634 1.20879 1.20852 1.20772 0.94740 0.81915 0.99832 1.22732 1.00958 0.89945 1.03365 1.22906 1.02624 1.03828 0.91572 1.22919 1.02508 0.99238 0.97611 0.94714 0.90279 0.93919 0.91851 0.90514 0.91505 0.91429 0.89769 0.91364 0.94939 0.94725 0.92673 0.90596 0.90873 0.87992 0.88963 0.89718 0.89374 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.37 -6.60 8.81 -35.23 -0.31 -6.91 16 3 C 0.10 1.70 3.11 -25.61 -0.08 1.62 16 4 H 0.07 1.12 7.81 -51.93 -0.41 0.71 16 5 C -0.14 -2.01 6.56 -25.03 -0.16 -2.17 16 6 C -0.12 -1.61 6.91 -24.70 -0.17 -1.78 16 7 C -0.11 -1.85 6.31 -25.07 -0.16 -2.01 16 8 C -0.12 -2.21 2.41 -90.65 -0.22 -2.42 16 9 H 0.12 2.41 6.30 -51.93 -0.33 2.09 16 10 C 0.55 11.98 5.45 -10.99 -0.06 11.92 16 11 O -0.57 -13.52 15.15 5.56 0.08 -13.44 16 12 N -0.59 -12.95 2.46 -175.06 -0.43 -13.38 16 13 C 0.24 5.80 4.80 -5.20 -0.02 5.78 16 14 C -0.54 -14.02 9.11 -34.45 -0.31 -14.34 16 15 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 18 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.15 2.99 5.76 -4.04 -0.02 2.97 16 23 C -0.15 -2.62 6.01 -90.62 -0.54 -3.16 16 24 C -0.17 -2.68 10.18 -26.70 -0.27 -2.95 16 25 C -0.19 -2.64 10.25 -26.70 -0.27 -2.92 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.53 6.84 -51.93 -0.36 1.17 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.03 0.86 6.15 -51.93 -0.32 0.54 16 37 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 39 H 0.07 1.48 6.99 -51.93 -0.36 1.11 16 40 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 41 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -29.31 355.75 -8.52 -37.83 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.64 Total: 4.96 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.30 Total: -6.30 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.31 Total: -37.02 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.23 Total: -20.35 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.31 -8.52 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346799051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.213 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds