Wall clock time and date at job start Tue Mar 31 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 113.99985 * 2 1 4 4 H 1.09000 * 110.01813 * 330.69881 * 3 2 1 5 5 C 1.54271 * 110.03066 * 92.09334 * 3 2 1 6 6 C 1.54961 * 104.15958 * 142.86525 * 5 3 2 7 7 C 1.54891 * 102.77943 * 322.10639 * 6 5 3 8 8 C 1.53874 * 110.03174 * 209.30604 * 3 2 1 9 9 H 1.09003 * 110.02749 * 121.43325 * 8 3 2 10 10 C 1.50694 * 110.03425 * 0.04965 * 8 3 2 11 11 O 1.21281 * 120.00469 * 270.15465 * 10 8 3 12 12 N 1.34781 * 119.99838 * 90.15286 * 10 8 3 13 13 C 1.46503 * 120.00025 * 4.60581 * 12 10 8 14 14 C 1.50690 * 109.47180 * 90.00093 * 13 12 10 15 15 H 1.08004 * 120.00210 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00307 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99462 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00460 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47572 * 119.99965 * 18 16 14 21 21 H 1.48509 * 109.46852 * 240.00135 * 18 16 14 22 22 C 1.46504 * 119.99749 * 184.60579 * 12 10 8 23 23 C 1.53003 * 109.47111 * 93.75819 * 22 12 10 24 24 C 1.52993 * 117.49879 * 243.99860 * 23 22 12 25 25 C 1.52996 * 117.49888 * 175.33702 * 23 22 12 26 26 H 1.09004 * 109.47297 * 299.99992 * 1 2 3 27 27 H 1.09001 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47291 * 60.00133 * 1 2 3 29 29 H 1.09001 * 110.48311 * 261.57285 * 5 3 2 30 30 H 1.08991 * 110.49107 * 24.21483 * 5 3 2 31 31 H 1.09004 * 110.76272 * 203.77569 * 6 5 3 32 32 H 1.09006 * 110.88297 * 80.49781 * 6 5 3 33 33 H 1.08993 * 110.48579 * 279.24500 * 7 6 5 34 34 H 1.09001 * 110.59887 * 156.64710 * 7 6 5 35 35 H 1.09004 * 109.46765 * 210.00655 * 13 12 10 36 36 H 1.08999 * 109.46613 * 329.99928 * 13 12 10 37 37 H 0.97005 * 119.99960 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.46802 * 213.75261 * 22 12 10 39 39 H 1.08998 * 109.47377 * 333.75797 * 22 12 10 40 40 H 1.09004 * 115.54847 * 29.66645 * 23 22 12 41 41 H 1.09000 * 117.49759 * 359.97438 * 24 23 22 42 42 H 1.09001 * 117.50439 * 145.02078 * 24 23 22 43 43 H 1.09001 * 117.49605 * 214.97843 * 25 23 22 44 44 H 1.08996 * 117.50104 * 359.97034 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3460 2.0096 -0.5012 5 6 2.2734 1.7667 1.4484 6 6 3.6103 2.5455 1.3612 7 6 4.4231 1.7171 0.3354 8 6 3.3762 1.2742 -0.7076 9 1 3.3752 1.9639 -1.5517 10 6 3.6793 -0.1231 -1.1835 11 8 4.2683 -0.8964 -0.4582 12 7 3.2957 -0.5136 -2.4151 13 6 2.6746 0.4489 -3.3285 14 6 3.7429 1.1233 -4.1499 15 1 4.7807 0.8609 -4.0063 16 6 3.3955 2.0745 -5.0855 17 7 2.1316 2.3929 -5.2613 18 14 4.7196 2.9101 -6.1042 19 1 6.0511 2.3781 -5.7176 20 1 4.4785 2.6425 -7.5448 21 1 4.6821 4.3744 -5.8596 22 6 3.4998 -1.9006 -2.8405 23 6 2.2341 -2.7124 -2.5575 24 6 2.3374 -3.8503 -1.5402 25 6 2.2067 -4.1666 -3.0322 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.4719 2.4204 1.7922 30 1 2.3757 0.9066 2.1101 31 1 4.1119 2.5617 2.3288 32 1 3.4462 3.5593 0.9958 33 1 4.8727 0.8488 0.8169 34 1 5.1909 2.3331 -0.1327 35 1 1.9825 -0.0724 -3.9898 36 1 2.1319 1.1983 -2.7523 37 1 1.8871 3.0625 -5.9193 38 1 3.7158 -1.9250 -3.9085 39 1 4.3372 -2.3299 -2.2904 40 1 1.2991 -2.1533 -2.5941 41 1 3.3072 -4.0210 -1.0727 42 1 1.4702 -4.0403 -0.9077 43 1 1.2535 -4.5643 -3.3806 44 1 3.0901 -4.5449 -3.5464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346799051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:30 Heat of formation + Delta-G solvation = -83.530335 kcal Electronic energy + Delta-G solvation = -23930.214104 eV Core-core repulsion = 20654.350658 eV Total energy + Delta-G solvation = -3275.863446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31112 -39.30666 -38.10475 -36.63466 -36.34820 -34.40339 -30.74916 -29.45288 -29.17074 -27.59128 -26.82868 -24.91069 -23.20470 -22.61435 -21.72721 -21.25913 -19.65213 -18.66638 -18.29893 -17.51493 -17.21208 -16.61365 -16.15883 -16.14032 -15.77203 -15.47714 -15.22664 -14.71970 -14.53562 -14.39509 -14.16211 -13.63800 -13.34311 -13.33570 -12.86143 -12.66978 -12.54903 -12.40776 -12.36002 -12.31215 -12.23054 -12.12163 -11.96248 -11.71414 -11.62223 -11.45822 -11.27749 -10.81734 -10.66939 -10.46457 -10.42579 -9.35681 -8.20598 -6.36192 1.38853 1.42052 1.52927 1.91552 2.31796 2.47611 2.87131 2.99317 3.08309 3.59962 3.65594 3.84695 3.87704 4.04216 4.14979 4.22538 4.32326 4.44727 4.47605 4.48385 4.56752 4.60875 4.67637 4.74950 4.76693 4.78835 4.83417 4.85700 4.94982 5.00976 5.01616 5.09142 5.14958 5.22639 5.23462 5.26989 5.31500 5.46979 5.66492 5.93906 6.07193 6.32705 6.63237 6.87784 7.33710 7.53623 8.84363 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.007920 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.222559 B = 3534.347347 C = 4901.817813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.099 3.901 4 H 0.070 0.930 5 C -0.134 4.134 6 C -0.110 4.110 7 C -0.111 4.111 8 C -0.120 4.120 9 H 0.093 0.907 10 C 0.544 3.456 11 O -0.594 6.594 12 N -0.595 5.595 13 C 0.263 3.737 14 C -0.549 4.549 15 H 0.048 0.952 16 C 0.024 3.976 17 N -0.917 5.917 18 Si 0.956 3.044 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.274 1.274 22 C 0.150 3.850 23 C -0.175 4.175 24 C -0.167 4.167 25 C -0.157 4.157 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.013 0.987 36 H 0.026 0.974 37 H 0.268 0.732 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 -2.600 9.537 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.317 6.317 3 C 0.040 3.960 4 H 0.088 0.912 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.149 4.149 8 C -0.142 4.142 9 H 0.111 0.889 10 C 0.334 3.666 11 O -0.477 6.477 12 N -0.324 5.324 13 C 0.142 3.858 14 C -0.588 4.588 15 H 0.067 0.933 16 C -0.176 4.176 17 N -0.556 5.556 18 Si 0.781 3.219 19 H -0.198 1.198 20 H -0.203 1.203 21 H -0.199 1.199 22 C 0.027 3.973 23 C -0.194 4.194 24 C -0.204 4.204 25 C -0.194 4.194 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.780 -3.056 9.765 10.603 hybrid contribution 0.252 0.685 -1.090 1.312 sum -2.528 -2.371 8.675 9.342 Atomic orbital electron populations 1.22859 0.80181 1.03135 1.00422 1.88011 1.20869 1.27713 1.95060 1.22754 0.92044 0.84770 0.96398 0.91195 1.22844 0.98962 1.00463 0.94937 1.22413 0.94540 0.98515 0.99248 1.22330 0.96736 1.00183 0.95672 1.22195 0.97279 0.94679 1.00029 0.88857 1.20256 0.76529 0.89354 0.80506 1.90488 1.44590 1.56449 1.56150 1.48007 1.59757 1.10461 1.14173 1.18915 0.92460 0.86808 0.87597 1.21730 0.93687 1.22369 1.20976 0.93348 1.25628 0.97422 0.96948 0.97646 1.70019 1.17325 1.32894 1.35360 0.85543 0.79328 0.78500 0.78540 1.19787 1.20293 1.19924 1.20828 0.95944 0.81333 0.99209 1.22521 0.98926 0.91187 1.06767 1.22918 1.02762 1.02261 0.92496 1.23037 1.04135 0.95758 0.96504 0.92181 0.89351 0.94587 0.88943 0.91198 0.89192 0.89881 0.91544 0.91037 0.96907 0.95596 0.92271 0.91235 0.91672 0.89380 0.89774 0.88444 0.87187 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.85 113.37 1.23 2.06 16 2 O -0.40 -14.23 8.81 -148.98 -1.31 -15.55 16 3 C 0.10 3.29 3.11 31.32 0.10 3.38 16 4 H 0.07 2.26 7.81 -2.39 -0.02 2.24 16 5 C -0.13 -3.48 6.56 31.70 0.21 -3.28 16 6 C -0.11 -2.69 6.91 31.91 0.22 -2.47 16 7 C -0.11 -3.67 6.31 31.67 0.20 -3.47 16 8 C -0.12 -4.70 2.41 -10.82 -0.03 -4.73 16 9 H 0.09 4.02 6.30 -2.39 -0.02 4.01 16 10 C 0.54 24.54 5.45 87.65 0.48 25.02 16 11 O -0.59 -28.96 15.15 -3.03 -0.05 -29.00 16 12 N -0.60 -27.12 2.46 -826.16 -2.03 -29.14 16 13 C 0.26 13.14 4.80 85.63 0.41 13.55 16 14 C -0.55 -29.43 9.11 25.60 0.23 -29.20 16 15 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 16 C 0.02 1.28 5.46 84.65 0.46 1.74 16 17 N -0.92 -50.46 13.29 21.45 0.28 -50.18 16 18 Si 0.96 42.12 29.54 68.60 2.03 44.15 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 C 0.15 6.14 5.76 86.38 0.50 6.64 16 23 C -0.17 -6.13 6.01 -10.80 -0.06 -6.19 16 24 C -0.17 -5.07 10.18 30.62 0.31 -4.75 16 25 C -0.16 -4.23 10.25 30.62 0.31 -3.92 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.07 2.43 6.84 -2.39 -0.02 2.41 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.01 0.68 8.07 -2.39 -0.02 0.66 16 36 H 0.03 1.34 6.15 -2.39 -0.01 1.32 16 37 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 38 H 0.07 2.85 8.10 -2.39 -0.02 2.83 16 39 H 0.06 2.73 6.99 -2.39 -0.02 2.71 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.08 2.69 8.03 -2.39 -0.02 2.67 16 42 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 43 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -63.60 355.75 4.45 -59.15 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.96 Total: 26.19 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 4.57 Total: -5.61 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -1.74 Total: -79.32 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -1.36 Total: -44.55 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -63.60 4.45 -59.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346799051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.382 kcal (2) G-P(sol) polarization free energy of solvation -63.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds