Wall clock time and date at job start Tue Mar 31 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00332 * 2 1 4 4 H 1.08999 * 110.06053 * 28.58302 * 3 2 1 5 5 C 1.54266 * 110.02910 * 267.16265 * 3 2 1 6 6 C 1.54893 * 104.19910 * 217.10323 * 5 3 2 7 7 C 1.54894 * 102.74505 * 37.94761 * 6 5 3 8 8 C 1.53876 * 110.03238 * 149.99872 * 3 2 1 9 9 H 1.08999 * 110.07823 * 238.58553 * 8 3 2 10 10 C 1.50697 * 110.03229 * 0.02562 * 8 3 2 11 11 O 1.21277 * 120.00586 * 77.02379 * 10 8 3 12 12 N 1.34786 * 119.99658 * 257.02285 * 10 8 3 13 13 C 1.46497 * 119.99894 * 185.04540 * 12 10 8 14 14 C 1.50699 * 109.46924 * 270.00068 * 13 12 10 15 15 H 1.08000 * 120.00006 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00044 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00283 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99965 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47214 * 89.99631 * 18 16 14 20 20 H 1.48492 * 109.47087 * 209.99690 * 18 16 14 21 21 H 1.48500 * 109.46904 * 330.00173 * 18 16 14 22 22 C 1.46500 * 119.99831 * 5.04738 * 12 10 8 23 23 C 1.52995 * 109.47198 * 84.05955 * 22 12 10 24 24 C 1.53000 * 117.51507 * 116.28095 * 23 22 12 25 25 C 1.53005 * 117.49831 * 184.91045 * 23 22 12 26 26 H 1.08996 * 109.47699 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46931 * 300.00984 * 1 2 3 28 28 H 1.09002 * 109.46923 * 59.99930 * 1 2 3 29 29 H 1.09004 * 110.48753 * 98.42966 * 5 3 2 30 30 H 1.08999 * 110.48979 * 335.78495 * 5 3 2 31 31 H 1.08993 * 110.75933 * 279.63721 * 6 5 3 32 32 H 1.08996 * 110.91637 * 156.33140 * 6 5 3 33 33 H 1.08999 * 110.48523 * 203.38277 * 7 6 5 34 34 H 1.09001 * 110.48906 * 80.73346 * 7 6 5 35 35 H 1.08996 * 109.47362 * 29.99691 * 13 12 10 36 36 H 1.09002 * 109.46960 * 150.00432 * 13 12 10 37 37 H 0.96994 * 120.00267 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.46726 * 324.05732 * 22 12 10 39 39 H 1.08997 * 109.46638 * 204.06123 * 22 12 10 40 40 H 1.08996 * 115.55293 * 330.58588 * 23 22 12 41 41 H 1.09000 * 117.49831 * 214.96444 * 24 23 22 42 42 H 1.09004 * 117.49954 * 359.97438 * 24 23 22 43 43 H 1.09005 * 117.49367 * 359.97438 * 25 23 22 44 44 H 1.08997 * 117.49869 * 144.97345 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3410 2.0127 0.4898 5 6 2.2907 1.7589 -1.4476 6 6 3.6255 2.5386 -1.3496 7 6 4.4268 1.7153 -0.3108 8 6 3.3684 1.2776 0.7229 9 1 3.3589 1.9709 1.5639 10 6 3.6669 -0.1178 1.2073 11 8 4.0500 -0.9622 0.4256 12 7 3.5080 -0.4274 2.5095 13 6 3.9025 -1.7498 3.0013 14 6 2.7336 -2.6948 2.8939 15 1 1.7910 -2.3453 2.4992 16 6 2.8674 -4.0058 3.2996 17 7 1.8472 -4.8304 3.2064 18 14 4.4975 -4.6103 3.9830 19 1 4.5211 -4.4127 5.4546 20 1 4.6586 -6.0539 3.6747 21 1 5.6086 -3.8445 3.3630 22 6 2.9409 0.5584 3.4329 23 6 1.4136 0.5027 3.3634 24 6 0.6635 0.0788 4.6278 25 6 0.6313 1.5393 4.1726 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.4934 2.4109 -1.8044 30 1 2.4007 0.8952 -2.1034 31 1 3.4547 3.5531 -0.9896 32 1 4.1394 2.5528 -2.3107 33 1 5.1882 2.3354 0.1622 34 1 4.8817 0.8445 -0.7830 35 1 4.7313 -2.1277 2.4028 36 1 4.2124 -1.6722 4.0434 37 1 1.9412 -5.7526 3.4921 38 1 3.2813 1.5556 3.1536 39 1 3.2669 0.3344 4.4485 40 1 0.9975 0.1945 2.4043 41 1 -0.2461 -0.5081 4.5004 42 1 1.2582 -0.1608 5.5093 43 1 1.2049 2.2606 4.7547 44 1 -0.2992 1.9133 3.7455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346799052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:34 Heat of formation + Delta-G solvation = -53.733168 kcal Electronic energy + Delta-G solvation = -24164.636644 eV Core-core repulsion = 20890.065301 eV Total energy + Delta-G solvation = -3274.571344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95948 -37.82262 -36.94610 -35.51539 -34.23942 -32.35616 -29.69205 -28.10718 -27.91631 -26.03025 -25.78429 -22.77469 -21.98677 -20.83593 -20.51790 -20.37514 -18.11717 -17.20511 -16.67702 -16.21666 -15.59909 -15.14218 -14.85495 -14.65414 -14.44637 -13.87261 -13.78556 -13.62716 -13.04425 -12.73989 -12.40238 -12.34192 -12.08977 -11.67160 -11.44554 -11.29711 -11.22920 -11.14084 -11.02399 -11.00685 -10.79203 -10.57695 -10.48154 -10.45648 -10.00961 -9.94277 -9.53243 -9.33126 -9.25780 -8.71675 -8.45671 -7.54573 -5.94651 -3.89834 3.33525 3.41891 3.46505 3.48510 3.89426 4.06792 4.26576 4.50911 4.61416 4.74211 4.94841 5.11671 5.22266 5.27093 5.28738 5.38010 5.44686 5.51638 5.53607 5.54438 5.64438 5.70636 5.75353 5.81645 5.86247 5.90762 5.92033 6.00217 6.07599 6.09136 6.13896 6.27612 6.33957 6.47345 6.47962 6.71688 6.79712 7.09089 7.50668 7.56724 7.76633 8.44708 8.64426 9.13924 9.23220 9.67247 11.19233 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.006856 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.323862 B = 4083.036203 C = 4639.004889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.100 3.900 4 H 0.064 0.936 5 C -0.145 4.145 6 C -0.119 4.119 7 C -0.112 4.112 8 C -0.119 4.119 9 H 0.093 0.907 10 C 0.534 3.466 11 O -0.527 6.527 12 N -0.593 5.593 13 C 0.218 3.782 14 C -0.508 4.508 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.902 5.902 18 Si 0.869 3.131 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.146 3.854 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.194 4.194 26 H 0.087 0.913 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 18.055 -2.688 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.041 3.959 4 H 0.082 0.918 5 C -0.183 4.183 6 C -0.157 4.157 7 C -0.150 4.150 8 C -0.141 4.141 9 H 0.111 0.889 10 C 0.320 3.680 11 O -0.403 6.403 12 N -0.324 5.324 13 C 0.097 3.903 14 C -0.547 4.547 15 H 0.097 0.903 16 C -0.132 4.132 17 N -0.542 5.542 18 Si 0.697 3.303 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.190 1.190 22 C 0.022 3.978 23 C -0.178 4.178 24 C -0.197 4.197 25 C -0.231 4.231 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.358 17.204 -3.057 17.478 hybrid contribution 0.270 -0.301 0.580 0.707 sum -0.088 16.903 -2.478 17.084 Atomic orbital electron populations 1.22774 0.81822 1.03060 0.98844 1.88255 1.18800 1.25727 1.94556 1.22582 0.92963 0.85606 0.94714 0.91770 1.22897 0.97418 1.00477 0.97503 1.22383 0.95732 0.98223 0.99317 1.22356 0.96547 1.00516 0.95592 1.22215 0.95837 0.96872 0.99134 0.88865 1.19704 0.77648 0.88680 0.81940 1.90630 1.46469 1.49763 1.53425 1.47824 1.61575 1.15470 1.07518 1.19629 0.97133 0.79949 0.93542 1.21341 0.98172 0.93895 1.41255 0.90320 1.24842 0.96028 0.96609 0.95723 1.69894 1.30358 1.05273 1.48632 0.86954 0.85480 0.78551 0.79360 1.20387 1.21167 1.19013 1.21007 0.90726 0.91661 0.94401 1.22917 0.94687 1.02679 0.97510 1.22852 1.02779 0.95603 0.98505 1.22967 1.02087 0.92882 1.05210 0.89434 0.94417 0.94726 0.91758 0.90058 0.91613 0.91239 0.91467 0.89555 0.94533 0.96207 0.92911 0.91509 0.90667 0.86979 0.89132 0.88919 0.89310 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.27 101.05 1.04 1.51 16 2 O -0.36 -6.59 7.85 -44.88 -0.35 -6.95 16 3 C 0.10 1.47 3.17 -25.61 -0.08 1.38 16 4 H 0.06 0.80 7.81 -51.93 -0.41 0.39 16 5 C -0.15 -1.82 6.56 -25.07 -0.16 -1.98 16 6 C -0.12 -1.30 6.91 -24.73 -0.17 -1.47 16 7 C -0.11 -1.52 6.32 -25.06 -0.16 -1.68 16 8 C -0.12 -1.84 2.86 -90.65 -0.26 -2.10 16 9 H 0.09 1.21 5.65 -51.93 -0.29 0.92 16 10 C 0.53 11.26 5.36 -10.98 -0.06 11.20 16 11 O -0.53 -13.59 15.42 -4.09 -0.06 -13.65 16 12 N -0.59 -12.54 2.47 -175.07 -0.43 -12.97 16 13 C 0.22 5.48 4.23 -5.20 -0.02 5.46 16 14 C -0.51 -14.80 9.94 -34.44 -0.34 -15.14 16 15 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 18 Si 0.87 22.11 27.47 -169.99 -4.67 17.44 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 22 C 0.15 2.40 5.51 -4.04 -0.02 2.38 16 23 C -0.16 -2.58 5.97 -90.62 -0.54 -3.12 16 24 C -0.16 -2.54 10.18 -26.73 -0.27 -2.81 16 25 C -0.19 -2.45 10.25 -26.72 -0.27 -2.72 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 27 H 0.04 0.51 7.16 -51.93 -0.37 0.14 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.41 7.06 -51.93 -0.37 1.04 16 35 H 0.04 1.00 6.55 -51.93 -0.34 0.66 16 36 H 0.02 0.47 7.28 -51.93 -0.38 0.09 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.07 0.88 5.89 -51.93 -0.31 0.58 16 39 H 0.07 1.19 7.56 -51.93 -0.39 0.80 16 40 H 0.11 2.06 5.38 -51.93 -0.28 1.78 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -34.95 347.00 -8.30 -43.25 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.36 Total: 2.32 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.43 Total: -7.12 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.34 Total: -40.52 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.42 Total: -20.59 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.95 -8.30 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346799052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.483 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds