Wall clock time and date at job start Tue Mar 31 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00332 * 2 1 4 4 H 1.08999 * 110.06053 * 28.58302 * 3 2 1 5 5 C 1.54266 * 110.02910 * 267.16265 * 3 2 1 6 6 C 1.54893 * 104.19910 * 217.10323 * 5 3 2 7 7 C 1.54894 * 102.74505 * 37.94761 * 6 5 3 8 8 C 1.53876 * 110.03238 * 149.99872 * 3 2 1 9 9 H 1.08999 * 110.07823 * 238.58553 * 8 3 2 10 10 C 1.50697 * 110.03229 * 0.02562 * 8 3 2 11 11 O 1.21277 * 120.00586 * 77.02379 * 10 8 3 12 12 N 1.34786 * 119.99658 * 257.02285 * 10 8 3 13 13 C 1.46497 * 119.99894 * 185.04540 * 12 10 8 14 14 C 1.50699 * 109.46924 * 270.00068 * 13 12 10 15 15 H 1.08000 * 120.00006 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00044 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00283 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99965 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47214 * 89.99631 * 18 16 14 20 20 H 1.48492 * 109.47087 * 209.99690 * 18 16 14 21 21 H 1.48500 * 109.46904 * 330.00173 * 18 16 14 22 22 C 1.46500 * 119.99831 * 5.04738 * 12 10 8 23 23 C 1.52995 * 109.47198 * 84.05955 * 22 12 10 24 24 C 1.53000 * 117.51507 * 116.28095 * 23 22 12 25 25 C 1.53005 * 117.49831 * 184.91045 * 23 22 12 26 26 H 1.08996 * 109.47699 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46931 * 300.00984 * 1 2 3 28 28 H 1.09002 * 109.46923 * 59.99930 * 1 2 3 29 29 H 1.09004 * 110.48753 * 98.42966 * 5 3 2 30 30 H 1.08999 * 110.48979 * 335.78495 * 5 3 2 31 31 H 1.08993 * 110.75933 * 279.63721 * 6 5 3 32 32 H 1.08996 * 110.91637 * 156.33140 * 6 5 3 33 33 H 1.08999 * 110.48523 * 203.38277 * 7 6 5 34 34 H 1.09001 * 110.48906 * 80.73346 * 7 6 5 35 35 H 1.08996 * 109.47362 * 29.99691 * 13 12 10 36 36 H 1.09002 * 109.46960 * 150.00432 * 13 12 10 37 37 H 0.96994 * 120.00267 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.46726 * 324.05732 * 22 12 10 39 39 H 1.08997 * 109.46638 * 204.06123 * 22 12 10 40 40 H 1.08996 * 115.55293 * 330.58588 * 23 22 12 41 41 H 1.09000 * 117.49831 * 214.96444 * 24 23 22 42 42 H 1.09004 * 117.49954 * 359.97438 * 24 23 22 43 43 H 1.09005 * 117.49367 * 359.97438 * 25 23 22 44 44 H 1.08997 * 117.49869 * 144.97345 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3410 2.0127 0.4898 5 6 2.2907 1.7589 -1.4476 6 6 3.6255 2.5386 -1.3496 7 6 4.4268 1.7153 -0.3108 8 6 3.3684 1.2776 0.7229 9 1 3.3589 1.9709 1.5639 10 6 3.6669 -0.1178 1.2073 11 8 4.0500 -0.9622 0.4256 12 7 3.5080 -0.4274 2.5095 13 6 3.9025 -1.7498 3.0013 14 6 2.7336 -2.6948 2.8939 15 1 1.7910 -2.3453 2.4992 16 6 2.8674 -4.0058 3.2996 17 7 1.8472 -4.8304 3.2064 18 14 4.4975 -4.6103 3.9830 19 1 4.5211 -4.4127 5.4546 20 1 4.6586 -6.0539 3.6747 21 1 5.6086 -3.8445 3.3630 22 6 2.9409 0.5584 3.4329 23 6 1.4136 0.5027 3.3634 24 6 0.6635 0.0788 4.6278 25 6 0.6313 1.5393 4.1726 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.4934 2.4109 -1.8044 30 1 2.4007 0.8952 -2.1034 31 1 3.4547 3.5531 -0.9896 32 1 4.1394 2.5528 -2.3107 33 1 5.1882 2.3354 0.1622 34 1 4.8817 0.8445 -0.7830 35 1 4.7313 -2.1277 2.4028 36 1 4.2124 -1.6722 4.0434 37 1 1.9412 -5.7526 3.4921 38 1 3.2813 1.5556 3.1536 39 1 3.2669 0.3344 4.4485 40 1 0.9975 0.1945 2.4043 41 1 -0.2461 -0.5081 4.5004 42 1 1.2582 -0.1608 5.5093 43 1 1.2049 2.2606 4.7547 44 1 -0.2992 1.9133 3.7455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346799052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:33 Heat of formation + Delta-G solvation = -76.554463 kcal Electronic energy + Delta-G solvation = -24165.626250 eV Core-core repulsion = 20890.065301 eV Total energy + Delta-G solvation = -3275.560949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35560 -39.16529 -38.30065 -36.71003 -35.95691 -34.52818 -31.25578 -29.50840 -29.15856 -27.53251 -27.02363 -24.65543 -23.12279 -22.04957 -21.90073 -21.51368 -19.55150 -19.00108 -18.48881 -17.56738 -17.03978 -16.63249 -16.16807 -16.06471 -15.76570 -15.43481 -15.15181 -14.81818 -14.67099 -14.36269 -14.11981 -13.64522 -13.58479 -13.36386 -13.04845 -12.68598 -12.43221 -12.37859 -12.31965 -12.27079 -12.19030 -11.97969 -11.92877 -11.70009 -11.63138 -11.43279 -11.19730 -10.78938 -10.69978 -10.47327 -10.34308 -9.30238 -8.26623 -6.27552 1.29225 1.34519 1.44818 1.92249 2.33757 2.40148 2.89950 3.06033 3.07251 3.55906 3.68208 3.76143 3.97551 4.05097 4.19214 4.26688 4.30958 4.32125 4.38831 4.45752 4.55200 4.59682 4.62957 4.67889 4.75379 4.79217 4.83728 4.86179 4.92703 4.99561 5.03253 5.09778 5.13279 5.20713 5.23840 5.34699 5.42982 5.49592 5.53759 5.79222 6.35428 6.40913 6.74455 6.85537 7.31308 7.62073 8.90795 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.006856 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.323862 B = 4083.036203 C = 4639.004889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.403 6.403 3 C 0.093 3.907 4 H 0.096 0.904 5 C -0.144 4.144 6 C -0.106 4.106 7 C -0.115 4.115 8 C -0.113 4.113 9 H 0.128 0.872 10 C 0.526 3.474 11 O -0.590 6.590 12 N -0.600 5.600 13 C 0.226 3.774 14 C -0.507 4.507 15 H 0.030 0.970 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.941 3.059 19 H -0.252 1.252 20 H -0.285 1.285 21 H -0.259 1.259 22 C 0.141 3.859 23 C -0.180 4.180 24 C -0.190 4.190 25 C -0.140 4.140 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.012 0.988 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 22.166 -1.596 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.322 6.322 3 C 0.035 3.965 4 H 0.113 0.887 5 C -0.182 4.182 6 C -0.144 4.144 7 C -0.153 4.153 8 C -0.134 4.134 9 H 0.146 0.854 10 C 0.316 3.684 11 O -0.470 6.470 12 N -0.330 5.330 13 C 0.103 3.897 14 C -0.546 4.546 15 H 0.049 0.951 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.765 3.235 19 H -0.177 1.177 20 H -0.211 1.211 21 H -0.183 1.183 22 C 0.019 3.981 23 C -0.199 4.199 24 C -0.227 4.227 25 C -0.178 4.178 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.528 21.374 -1.940 21.469 hybrid contribution -0.116 -1.597 0.201 1.613 sum 0.412 19.778 -1.740 19.858 Atomic orbital electron populations 1.22784 0.80722 1.01971 1.00858 1.88209 1.20415 1.28668 1.94941 1.22919 0.92685 0.84668 0.96244 0.88653 1.22899 0.99630 1.00063 0.95605 1.22392 0.93899 0.99016 0.99044 1.22397 0.96993 0.99912 0.95950 1.22369 0.97084 0.93208 1.00721 0.85450 1.20773 0.75865 0.90625 0.81185 1.90590 1.49160 1.52277 1.54989 1.47932 1.61608 1.14712 1.08701 1.19280 0.94507 0.81629 0.94235 1.21480 0.97730 0.95085 1.40331 0.95125 1.25802 1.00223 0.96765 0.96255 1.70061 1.33006 1.05785 1.50280 0.85806 0.80186 0.77677 0.79850 1.17656 1.21076 1.18283 1.21358 0.90650 0.92302 0.93819 1.22803 0.94826 1.05871 0.96447 1.22863 1.02246 0.99042 0.98576 1.23061 1.01832 0.90990 1.01887 0.92273 0.93046 0.91779 0.88762 0.93260 0.88045 0.90329 0.88695 0.93500 0.97021 0.93973 0.92742 0.87141 0.89988 0.89598 0.91350 0.89100 0.86086 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 10.27 113.37 1.16 2.17 16 2 O -0.40 -15.39 7.85 -139.75 -1.10 -16.49 16 3 C 0.09 2.54 3.17 31.32 0.10 2.64 16 4 H 0.10 1.98 7.81 -2.39 -0.02 1.96 16 5 C -0.14 -3.29 6.56 31.67 0.21 -3.08 16 6 C -0.11 -1.93 6.91 31.89 0.22 -1.71 16 7 C -0.11 -2.86 6.32 31.67 0.20 -2.66 16 8 C -0.11 -3.25 2.86 -10.81 -0.03 -3.28 16 9 H 0.13 2.70 5.65 -2.39 -0.01 2.69 16 10 C 0.53 22.52 5.36 87.65 0.47 22.99 16 11 O -0.59 -32.15 15.42 6.21 0.10 -32.05 16 12 N -0.60 -25.43 2.47 -826.17 -2.04 -27.47 16 13 C 0.23 11.59 4.23 85.63 0.36 11.96 16 14 C -0.51 -31.04 9.94 25.60 0.25 -30.79 16 15 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 16 C 0.01 0.37 5.47 84.66 0.46 0.84 16 17 N -0.95 -62.39 13.96 21.45 0.30 -62.09 16 18 Si 0.94 46.56 27.47 68.60 1.88 48.44 16 19 H -0.25 -11.39 7.11 99.48 0.71 -10.69 16 20 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 22 C 0.14 4.31 5.51 86.38 0.48 4.79 16 23 C -0.18 -5.61 5.97 -10.79 -0.06 -5.67 16 24 C -0.19 -5.94 10.18 30.60 0.31 -5.63 16 25 C -0.14 -3.01 10.25 30.60 0.31 -2.70 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.38 7.16 -2.39 -0.02 1.36 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.55 7.06 -2.39 -0.02 1.54 16 35 H 0.01 0.66 6.55 -2.39 -0.02 0.64 16 36 H 0.04 1.97 7.28 -2.39 -0.02 1.95 16 37 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 38 H 0.11 2.38 5.89 -2.39 -0.01 2.37 16 39 H 0.08 2.39 7.56 -2.39 -0.02 2.37 16 40 H 0.09 3.19 5.38 -2.39 -0.01 3.18 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.09 2.81 8.03 -2.39 -0.02 2.79 16 43 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -84.77 347.00 4.50 -80.27 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.91 Total: 19.53 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 4.45 Total: -10.14 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -1.74 Total: -89.56 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -1.00 Total: -48.54 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal Total: -84.77 4.50 -80.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346799052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.715 kcal (2) G-P(sol) polarization free energy of solvation -84.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds