Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99754 * 2 1 4 4 H 1.08996 * 110.43779 * 328.91360 * 3 2 1 5 5 C 1.54270 * 110.48449 * 91.45460 * 3 2 1 6 6 C 1.53874 * 106.59874 * 142.41845 * 5 3 2 7 7 C 1.54266 * 106.63927 * 359.97306 * 6 5 3 8 8 C 1.54894 * 110.59610 * 206.29120 * 3 2 1 9 9 H 1.08997 * 110.75903 * 321.64071 * 8 3 2 10 10 C 1.50698 * 110.75308 * 84.82896 * 8 3 2 11 11 O 1.21277 * 120.00275 * 11.16601 * 10 8 3 12 12 N 1.34778 * 120.00024 * 191.16748 * 10 8 3 13 13 C 1.46503 * 119.99941 * 5.36726 * 12 10 8 14 14 C 1.50701 * 109.47473 * 85.40197 * 13 12 10 15 15 H 1.08002 * 120.00093 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00146 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00020 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00083 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47407 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47140 * 119.99332 * 18 16 14 21 21 H 1.48504 * 109.47196 * 239.99399 * 18 16 14 22 22 C 1.46497 * 120.00567 * 185.36128 * 12 10 8 23 23 C 1.53001 * 109.46870 * 86.93896 * 22 12 10 24 24 C 1.53000 * 117.49644 * 243.62442 * 23 22 12 25 25 C 1.52998 * 60.00161 * 252.51452 * 24 23 22 26 26 H 1.08998 * 109.47152 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47343 * 299.99914 * 1 2 3 28 28 H 1.09008 * 109.46978 * 60.00287 * 1 2 3 29 29 H 1.08992 * 110.03224 * 23.13211 * 5 3 2 30 30 H 1.08995 * 110.07111 * 261.72511 * 5 3 2 31 31 H 1.08998 * 110.03163 * 119.27865 * 6 5 3 32 32 H 1.08994 * 110.03469 * 240.66814 * 6 5 3 33 33 H 1.09003 * 110.48549 * 95.09353 * 7 6 5 34 34 H 1.09003 * 110.48997 * 217.73607 * 7 6 5 35 35 H 1.08997 * 109.47257 * 205.40860 * 13 12 10 36 36 H 1.09004 * 109.46921 * 325.40328 * 13 12 10 37 37 H 0.96996 * 119.99687 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47626 * 206.94315 * 22 12 10 39 39 H 1.09006 * 109.46846 * 326.94390 * 22 12 10 40 40 H 1.08991 * 115.55091 * 29.33436 * 23 22 12 41 41 H 1.09004 * 117.50313 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.49916 * 145.02204 * 24 23 22 43 43 H 1.09004 * 117.50027 * 252.51781 * 25 24 23 44 44 H 1.08994 * 117.52103 * 107.48400 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3659 2.0089 -0.5274 5 6 2.2633 1.7838 1.4447 6 6 3.5925 2.5587 1.4247 7 6 4.1020 2.5243 -0.0310 8 6 3.4194 1.2746 -0.6422 9 1 3.9528 0.3670 -0.3598 10 6 3.3255 1.3918 -2.1417 11 8 2.2723 1.6939 -2.6616 12 7 4.4121 1.1610 -2.9050 13 6 5.6520 0.6824 -2.2887 14 6 5.6064 -0.8192 -2.1689 15 1 4.7406 -1.3627 -2.5173 16 6 6.6700 -1.4991 -1.6144 17 7 7.7246 -0.8373 -1.1905 18 14 6.6138 -3.3604 -1.4665 19 1 5.3273 -3.8618 -2.0129 20 1 7.7409 -3.9520 -2.2312 21 1 6.7284 -3.7471 -0.0373 22 6 4.3533 1.3885 -4.3510 23 6 4.6869 2.8513 -4.6511 24 6 3.5911 3.7098 -5.2859 25 6 4.7936 3.2644 -6.1204 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.3408 0.9267 2.1135 30 1 1.4544 2.4382 1.7691 31 1 3.4284 3.5895 1.7385 32 1 4.3148 2.0782 2.0844 33 1 3.7960 3.4248 -0.5637 34 1 5.1865 2.4168 -0.0533 35 1 6.5009 0.9719 -2.9081 36 1 5.7585 1.1229 -1.2974 37 1 8.4729 -1.3157 -0.8007 38 1 5.0746 0.7415 -4.8503 39 1 3.3505 1.1628 -4.7139 40 1 5.3585 3.3352 -3.9421 41 1 2.6323 3.2328 -5.4894 42 1 3.5415 4.7590 -4.9944 43 1 5.5353 4.0205 -6.3779 44 1 4.6266 2.4941 -6.8732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346799053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = -71.151973 kcal Electronic energy + Delta-G solvation = -23528.100599 eV Core-core repulsion = 20252.773919 eV Total energy + Delta-G solvation = -3275.326680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.73633 -38.00555 -36.74408 -35.47241 -34.62748 -32.42814 -29.36843 -27.97704 -27.59597 -26.08158 -25.57307 -23.00821 -22.09068 -21.29702 -20.25738 -19.96153 -18.23810 -17.04441 -16.51403 -15.94096 -15.85028 -14.97137 -14.67647 -14.50605 -14.39732 -14.28080 -13.72247 -13.51608 -13.26197 -12.75058 -12.30617 -12.05203 -11.90242 -11.78807 -11.50552 -11.30756 -11.25137 -11.10180 -11.02053 -10.90324 -10.83941 -10.60177 -10.30886 -10.18933 -10.12483 -9.98173 -9.64706 -9.56320 -9.19392 -8.88242 -8.51065 -7.66038 -6.14266 -4.20549 3.25861 3.34216 3.39305 3.48281 3.84099 4.11327 4.24699 4.39129 4.81910 4.98018 5.08208 5.18128 5.19879 5.24596 5.32882 5.50655 5.60081 5.64594 5.69066 5.77902 5.80101 5.81483 5.85322 5.88786 5.93068 6.07286 6.12968 6.14735 6.17963 6.25020 6.33169 6.36965 6.41326 6.44619 6.62358 6.71904 6.85232 7.25035 7.61041 7.61828 7.82440 8.11470 8.40483 8.85780 9.10611 9.47474 10.92323 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009284 B = 0.008478 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.159066 B = 3301.782942 C = 5111.607401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.375 6.375 3 C 0.101 3.899 4 H 0.076 0.924 5 C -0.147 4.147 6 C -0.117 4.117 7 C -0.109 4.109 8 C -0.107 4.107 9 H 0.124 0.876 10 C 0.533 3.467 11 O -0.574 6.574 12 N -0.593 5.593 13 C 0.235 3.765 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.892 5.892 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.150 3.850 23 C -0.159 4.159 24 C -0.175 4.175 25 C -0.181 4.181 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 7.497 0.883 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.293 6.293 3 C 0.042 3.958 4 H 0.094 0.906 5 C -0.185 4.185 6 C -0.155 4.155 7 C -0.146 4.146 8 C -0.128 4.128 9 H 0.142 0.858 10 C 0.322 3.678 11 O -0.456 6.456 12 N -0.322 5.322 13 C 0.115 3.885 14 C -0.573 4.573 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.208 1.208 22 C 0.026 3.974 23 C -0.178 4.178 24 C -0.212 4.212 25 C -0.219 4.219 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.840 7.442 0.698 10.832 hybrid contribution 0.060 -0.897 0.147 0.911 sum -7.780 6.545 0.846 10.202 Atomic orbital electron populations 1.22692 0.81914 1.02095 0.99534 1.87951 1.18976 1.27631 1.94790 1.22845 0.94062 0.84756 0.94117 0.90556 1.22645 0.97685 1.00325 0.97812 1.22013 0.96583 0.99840 0.97059 1.22250 1.01220 0.96151 0.95020 1.22270 0.96301 1.02119 0.92116 0.85772 1.20155 0.83078 0.75664 0.88941 1.90542 1.29132 1.50731 1.75165 1.48126 1.14009 1.63651 1.06445 1.19518 0.80246 0.94533 0.94207 1.21567 1.03143 0.91813 1.40801 0.92045 1.24916 0.95110 0.98699 0.95004 1.69933 1.06504 1.35753 1.40873 0.86485 0.78137 0.85281 0.77896 1.19605 1.20958 1.20804 1.20824 1.01803 0.92413 0.82359 1.22806 1.02152 0.97408 0.95469 1.22941 0.94006 0.99782 1.04424 1.22903 1.01196 1.03547 0.94223 0.90214 0.94733 0.93988 0.90712 0.92034 0.91887 0.91183 0.91712 0.89718 0.94649 0.94029 0.92671 0.90130 0.91032 0.87936 0.88800 0.89598 0.89204 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.87 101.05 1.10 1.59 16 2 O -0.38 -6.97 10.42 -35.23 -0.37 -7.33 16 3 C 0.10 1.75 2.50 -25.07 -0.06 1.69 16 4 H 0.08 1.36 7.01 -51.93 -0.36 1.00 16 5 C -0.15 -2.08 6.56 -25.61 -0.17 -2.25 16 6 C -0.12 -1.61 6.80 -25.61 -0.17 -1.78 16 7 C -0.11 -1.77 5.94 -25.03 -0.15 -1.91 16 8 C -0.11 -2.07 1.97 -89.74 -0.18 -2.25 16 9 H 0.12 2.75 6.98 -51.93 -0.36 2.38 16 10 C 0.53 11.45 6.91 -10.99 -0.08 11.38 16 11 O -0.57 -13.14 15.29 5.56 0.09 -13.06 16 12 N -0.59 -12.69 2.47 -175.06 -0.43 -13.13 16 13 C 0.23 5.56 4.82 -5.19 -0.02 5.54 16 14 C -0.53 -14.12 8.81 -34.44 -0.30 -14.43 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 18 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 2.85 5.68 -4.04 -0.02 2.82 16 23 C -0.16 -2.60 6.00 -90.62 -0.54 -3.15 16 24 C -0.17 -2.54 10.18 -26.73 -0.27 -2.81 16 25 C -0.18 -2.43 10.25 -26.73 -0.27 -2.71 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.60 8.10 -51.92 -0.42 0.18 16 29 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.01 8.05 -51.93 -0.42 0.60 16 34 H 0.08 1.44 6.67 -51.93 -0.35 1.09 16 35 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 36 H 0.04 1.00 5.12 -51.93 -0.27 0.73 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.08 1.52 8.05 -51.93 -0.42 1.10 16 39 H 0.07 1.39 7.18 -51.93 -0.37 1.02 16 40 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -29.29 355.75 -8.46 -37.75 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.57 Total: 4.82 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.25 Total: -6.63 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.30 Total: -36.92 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.28 Total: -20.39 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.29 -8.46 -37.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346799053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.403 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds