Wall clock time and date at job start Tue Mar 31 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.46971 * 2 1 4 4 C 1.34230 * 116.99691 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00143 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99832 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47013 * 177.02054 * 6 4 3 8 8 H 1.09003 * 110.36994 * 56.03555 * 7 6 4 9 9 C 1.54382 * 110.41340 * 293.56214 * 7 6 4 10 10 C 1.54258 * 105.06086 * 217.36975 * 9 7 6 11 11 C 1.54386 * 105.06098 * 359.97438 * 10 9 7 12 12 N 1.48556 * 110.41264 * 178.38882 * 7 6 4 13 13 C 1.46911 * 111.00009 * 277.81912 * 12 7 6 14 14 C 1.52998 * 109.47074 * 166.89323 * 13 12 7 15 15 C 1.50698 * 115.55239 * 305.25018 * 14 13 12 16 16 H 1.08000 * 119.99980 * 144.64847 * 15 14 13 17 17 C 1.37878 * 119.99750 * 324.64509 * 15 14 13 18 18 N 1.31507 * 120.00277 * 344.04781 * 17 15 14 19 19 Si 1.86806 * 119.99498 * 164.04728 * 17 15 14 20 20 H 1.48500 * 109.47176 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46582 * 120.00209 * 19 17 15 22 22 H 1.48496 * 109.46779 * 239.99608 * 19 17 15 23 23 C 1.53000 * 117.49462 * 159.57965 * 14 13 12 24 24 C 1.53004 * 117.49704 * 90.92025 * 14 13 12 25 25 H 1.09004 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47358 * 299.99828 * 1 2 3 27 27 H 1.09005 * 109.47274 * 60.00224 * 1 2 3 28 28 H 1.08999 * 109.47017 * 239.99782 * 2 1 3 29 29 H 1.09007 * 109.46958 * 120.00212 * 2 1 3 30 30 H 1.09000 * 109.46956 * 57.02592 * 6 4 3 31 31 H 1.08997 * 109.46894 * 297.02119 * 6 4 3 32 32 H 1.08996 * 110.32146 * 336.26354 * 9 7 6 33 33 H 1.09002 * 110.32716 * 98.47212 * 9 7 6 34 34 H 1.08998 * 110.32465 * 118.89185 * 10 9 7 35 35 H 1.09001 * 110.32462 * 241.00128 * 10 9 7 36 36 H 1.08999 * 110.41316 * 265.07697 * 11 10 9 37 37 H 1.09008 * 110.40928 * 142.62854 * 11 10 9 38 38 H 1.09001 * 109.46638 * 46.89293 * 13 12 7 39 39 H 1.09000 * 109.46736 * 286.89537 * 13 12 7 40 40 H 0.97006 * 120.00000 * 184.95950 * 18 17 15 41 41 H 1.08994 * 117.50095 * 359.97438 * 23 14 13 42 42 H 1.08998 * 117.50095 * 145.02396 * 23 14 13 43 43 H 1.08991 * 117.50056 * 214.97802 * 24 14 13 44 44 H 1.09001 * 117.49728 * 359.97390 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4467 2.8581 0.0757 8 1 5.8361 2.2511 -0.7416 9 6 5.8889 2.2798 1.4372 10 6 7.1637 3.0641 1.8107 11 6 7.3848 4.0498 0.6433 12 7 6.0389 4.2200 0.0374 13 6 6.1417 4.7107 -1.3435 14 6 6.4406 6.2112 -1.3306 15 6 5.4746 7.0596 -0.5445 16 1 5.8315 7.9232 -0.0029 17 6 4.1352 6.7335 -0.5168 18 7 3.6442 5.8950 -1.4029 19 14 3.0182 7.4827 0.7796 20 1 3.8092 8.3883 1.6511 21 1 1.9376 8.2548 0.1153 22 1 2.4198 6.4010 1.6023 23 6 7.0495 6.8210 -2.5948 24 6 7.9095 6.6390 -1.3416 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.5423 3.4874 0.8616 31 1 3.6285 3.4510 -0.9159 32 1 5.1133 2.4393 2.1861 33 1 6.1123 1.2172 1.3426 34 1 7.0136 3.6085 2.7430 35 1 8.0124 2.3862 1.9013 36 1 8.0791 3.6285 -0.0837 37 1 7.7566 5.0041 1.0167 38 1 5.2005 4.5321 -1.8635 39 1 6.9462 4.1843 -1.8571 40 1 2.6902 5.7207 -1.4291 41 1 7.2376 6.1532 -3.4354 42 1 6.7519 7.8360 -2.8577 43 1 8.1772 7.5343 -0.7806 44 1 8.6630 5.8514 -1.3575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349648068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:58 Heat of formation + Delta-G solvation = -72.089552 kcal Electronic energy + Delta-G solvation = -23544.212092 eV Core-core repulsion = 20268.844756 eV Total energy + Delta-G solvation = -3275.367336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63417 -40.02383 -38.01432 -37.44149 -34.01293 -33.12415 -32.40134 -32.16718 -27.67034 -27.41284 -26.21993 -24.14340 -22.91524 -22.39611 -21.81094 -20.76757 -20.70739 -18.70148 -18.10186 -17.69391 -17.30397 -16.54242 -16.31551 -16.06735 -15.49174 -15.34562 -14.90048 -14.81291 -14.16337 -13.95935 -13.87205 -13.65045 -13.33211 -12.97265 -12.89324 -12.82735 -12.72346 -12.64925 -12.48971 -12.24707 -12.16662 -11.99613 -11.75493 -11.69831 -11.52249 -11.48200 -11.32454 -10.99620 -10.92356 -10.41633 -9.80311 -9.00047 -7.88626 -5.88870 1.15962 1.47619 1.54180 1.60867 1.67721 2.56887 3.13635 3.36306 3.70617 3.76160 3.84078 3.98270 3.99684 4.08714 4.12177 4.29447 4.33233 4.40420 4.43940 4.56326 4.58175 4.73580 4.79691 4.83317 4.89433 4.91189 4.93435 5.00122 5.03897 5.08881 5.13083 5.16911 5.21379 5.27793 5.30997 5.45277 5.46319 5.59890 5.70537 6.08025 6.32153 6.48533 6.66794 6.73793 7.05058 7.69465 9.13976 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.006414 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.739249 B = 4364.314864 C = 5328.705787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.367 6.367 4 C 0.474 3.526 5 O -0.529 6.529 6 C -0.093 4.093 7 C 0.081 3.919 8 H 0.038 0.962 9 C -0.109 4.109 10 C -0.115 4.115 11 C 0.038 3.962 12 N -0.482 5.482 13 C 0.100 3.900 14 C 0.048 3.952 15 C -0.490 4.490 16 H 0.036 0.964 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.927 3.073 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.210 4.210 24 C -0.196 4.196 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.090 0.910 39 H -0.004 1.004 40 H 0.258 0.742 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 -11.253 4.101 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.318 3.682 5 O -0.419 6.419 6 C -0.131 4.131 7 C -0.028 4.028 8 H 0.056 0.944 9 C -0.147 4.147 10 C -0.153 4.153 11 C -0.090 4.090 12 N -0.206 5.206 13 C -0.028 4.028 14 C 0.047 3.953 15 C -0.527 4.527 16 H 0.054 0.946 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.755 3.245 20 H -0.207 1.207 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.248 4.248 24 C -0.233 4.233 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.014 0.986 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.166 -11.307 4.378 12.317 hybrid contribution -0.056 0.101 -0.209 0.239 sum -2.222 -11.206 4.169 12.161 Atomic orbital electron populations 1.21831 0.90515 1.04450 1.03531 1.23319 0.97113 0.79158 1.02639 1.86556 1.24147 1.34020 1.83704 1.23860 0.80601 0.92642 0.71096 1.90583 1.60734 1.43748 1.46872 1.21244 0.95796 0.89468 1.06572 1.22221 0.92149 0.90527 0.97890 0.94434 1.22268 0.98004 0.99361 0.95042 1.22277 0.97501 0.97292 0.98198 1.23085 0.90474 0.99291 0.96180 1.65062 1.17347 1.19185 1.18962 1.21659 0.99584 0.93460 0.88084 1.18939 0.89539 0.92207 0.94599 1.20377 0.92393 1.10366 1.29569 0.94571 1.25060 0.98255 0.94676 0.95578 1.69912 1.12364 1.36333 1.33664 0.86031 0.79069 0.78294 0.81094 1.20721 1.21710 1.20268 1.22955 1.08386 1.01116 0.92356 1.22879 0.95956 1.02147 1.02320 0.87674 0.91458 0.91656 0.91333 0.90956 0.88382 0.87285 0.91835 0.90841 0.90769 0.89804 0.94885 0.90956 0.89226 0.98629 0.93198 0.91045 0.91442 0.91045 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 10.29 71.98 0.74 -1.70 16 2 C 0.05 1.18 6.19 71.98 0.45 1.63 16 3 O -0.37 -11.48 10.22 -51.42 -0.53 -12.00 16 4 C 0.47 16.32 7.71 71.24 0.55 16.87 16 5 O -0.53 -19.16 14.64 21.97 0.32 -18.84 16 6 C -0.09 -3.47 5.44 29.85 0.16 -3.31 16 7 C 0.08 3.00 1.88 45.06 0.08 3.09 16 8 H 0.04 1.46 7.83 -2.39 -0.02 1.45 16 9 C -0.11 -3.43 5.60 31.49 0.18 -3.25 16 10 C -0.11 -3.33 7.00 31.49 0.22 -3.11 16 11 C 0.04 1.32 5.89 86.45 0.51 1.83 16 12 N -0.48 -19.79 4.62 -856.61 -3.95 -23.75 16 13 C 0.10 4.52 3.96 86.30 0.34 4.86 16 14 C 0.05 2.29 1.81 -52.93 -0.10 2.19 16 15 C -0.49 -25.92 8.71 25.60 0.22 -25.69 16 16 H 0.04 1.99 7.87 -2.91 -0.02 1.97 16 17 C 0.07 3.41 5.10 84.66 0.43 3.84 16 18 N -0.88 -45.46 9.93 21.45 0.21 -45.25 16 19 Si 0.93 42.36 29.57 68.60 2.03 44.38 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 C -0.21 -9.38 9.96 30.62 0.30 -9.08 16 24 C -0.20 -8.25 9.46 30.62 0.29 -7.96 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 29 H 0.07 1.59 8.13 -2.38 -0.02 1.57 16 30 H 0.10 3.77 8.05 -2.39 -0.02 3.75 16 31 H 0.11 4.56 6.13 -2.39 -0.01 4.54 16 32 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 33 H 0.07 2.23 7.68 -2.39 -0.02 2.21 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.03 1.13 7.71 -2.39 -0.02 1.11 16 37 H 0.07 2.67 8.03 -2.38 -0.02 2.65 16 38 H 0.09 4.45 5.04 -2.39 -0.01 4.44 16 39 H 0.00 -0.19 7.65 -2.39 -0.02 -0.20 16 40 H 0.26 12.79 8.32 -92.70 -0.77 12.02 16 41 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -56.70 350.95 3.42 -53.27 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.96 Total: 21.97 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.38 Total: -19.79 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -3.74 Total: -68.99 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.20 Total: -30.84 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -56.70 3.42 -53.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349648068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.818 kcal (2) G-P(sol) polarization free energy of solvation -56.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds