Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00272 * 2 1 4 4 H 1.09007 * 110.81318 * 26.66188 * 3 2 1 5 5 C 1.54886 * 110.75896 * 263.33140 * 3 2 1 6 6 C 1.54265 * 104.19925 * 203.74084 * 5 3 2 7 7 C 1.53881 * 106.59511 * 23.60577 * 6 5 3 8 8 C 1.54264 * 106.59879 * 0.02562 * 7 6 5 9 9 H 1.09003 * 110.48681 * 95.19864 * 8 7 6 10 10 C 1.50698 * 110.48899 * 217.71041 * 8 7 6 11 11 O 1.21280 * 120.00095 * 98.04207 * 10 8 7 12 12 N 1.34782 * 119.99978 * 278.05175 * 10 8 7 13 13 C 1.46929 * 120.63014 * 175.11466 * 12 10 8 14 14 C 1.53187 * 108.77376 * 126.41236 * 13 12 10 15 15 C 1.53041 * 109.34062 * 54.61561 * 14 13 12 16 16 C 1.53032 * 109.54280 * 298.68415 * 15 14 13 17 17 H 1.08999 * 109.47234 * 301.36592 * 16 15 14 18 18 C 1.50696 * 109.52604 * 181.29709 * 16 15 14 19 19 H 1.08004 * 120.00495 * 240.11389 * 18 16 15 20 20 C 1.37881 * 119.99776 * 60.11730 * 18 16 15 21 21 N 1.31506 * 120.00190 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99865 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47460 * 89.99681 * 22 20 18 24 24 H 1.48502 * 109.47068 * 209.99593 * 22 20 18 25 25 H 1.48504 * 109.47348 * 329.99504 * 22 20 18 26 26 C 1.46930 * 120.62873 * 355.13380 * 12 10 8 27 27 H 1.09006 * 109.46955 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47169 * 299.99882 * 1 2 3 29 29 H 1.09002 * 109.47114 * 59.99888 * 1 2 3 30 30 H 1.09000 * 110.48681 * 85.05982 * 5 3 2 31 31 H 1.09004 * 110.59611 * 322.47724 * 5 3 2 32 32 H 1.08994 * 110.03216 * 264.32857 * 6 5 3 33 33 H 1.08998 * 110.07345 * 142.90960 * 6 5 3 34 34 H 1.08995 * 110.03117 * 240.71786 * 7 6 5 35 35 H 1.09006 * 110.03060 * 119.28443 * 7 6 5 36 36 H 1.09001 * 109.58677 * 6.62653 * 13 12 10 37 37 H 1.09002 * 109.70066 * 246.26760 * 13 12 10 38 38 H 1.09003 * 109.49712 * 174.58291 * 14 13 12 39 39 H 1.08999 * 109.49772 * 294.65371 * 14 13 12 40 40 H 1.09006 * 109.45932 * 58.67660 * 15 14 13 41 41 H 1.09004 * 109.46027 * 178.62973 * 15 14 13 42 42 H 0.97006 * 120.00263 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.58587 * 353.37691 * 26 12 10 44 44 H 1.09004 * 109.58204 * 113.80316 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3360 2.0297 0.4572 5 6 2.3873 1.7385 -1.4385 6 6 3.4949 2.7934 -1.2381 7 6 4.1257 2.5125 0.1371 8 6 3.3798 1.2963 0.7239 9 1 3.9221 0.3757 0.5083 10 6 3.1912 1.4601 2.2101 11 8 2.1373 1.8729 2.6458 12 7 4.1938 1.1479 3.0551 13 6 4.0645 1.4020 4.4964 14 6 4.3550 0.1027 5.2541 15 6 5.7238 -0.4356 4.8309 16 6 5.7121 -0.7422 3.3317 17 1 4.9310 -1.4712 3.1160 18 6 7.0498 -1.3020 2.9217 19 1 7.6450 -0.7903 2.1798 20 6 7.5139 -2.4676 3.4936 21 7 6.7895 -3.0905 4.3973 22 14 9.1724 -3.1612 2.9859 23 1 10.2324 -2.6016 3.8626 24 1 9.1515 -4.6403 3.1168 25 1 9.4519 -2.7931 1.5746 26 6 5.4370 0.5475 2.5522 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.5269 2.1796 -1.9419 31 1 2.7671 0.8898 -2.0074 32 1 3.0643 3.7945 -1.2538 33 1 4.2478 2.6986 -2.0206 34 1 4.0012 3.3773 0.7886 35 1 5.1846 2.2806 0.0218 36 1 3.0512 1.7361 4.7191 37 1 4.7771 2.1690 4.7997 38 1 4.3570 0.2993 6.3262 39 1 3.5865 -0.6342 5.0207 40 1 6.4889 0.3114 5.0424 41 1 5.9432 -1.3472 5.3868 42 1 7.1158 -3.9107 4.7994 43 1 5.3291 0.3179 1.4921 44 1 6.2631 1.2442 2.6952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353741449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = -100.382682 kcal Electronic energy + Delta-G solvation = -23518.246078 eV Core-core repulsion = 20241.651860 eV Total energy + Delta-G solvation = -3276.594218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16127 -38.27960 -36.63397 -35.80369 -33.31177 -31.76972 -30.18782 -29.00317 -28.27184 -26.02334 -25.08595 -24.50149 -22.06697 -21.02804 -20.56161 -19.55356 -18.26416 -17.30228 -16.52599 -15.97858 -15.89360 -15.02966 -14.76333 -14.64355 -14.35523 -14.27672 -13.52085 -13.27837 -13.19981 -12.82374 -12.63834 -12.44665 -12.13290 -12.11746 -11.78708 -11.42502 -11.29011 -11.20936 -11.00814 -10.87515 -10.76234 -10.54653 -10.51461 -10.21147 -9.95777 -9.74902 -9.58277 -9.42950 -9.12022 -8.85998 -8.40933 -7.88438 -6.04328 -4.12759 3.05786 3.27207 3.34649 3.36557 3.51136 3.89804 4.38491 4.48334 4.63318 4.88521 5.16063 5.25161 5.30549 5.36392 5.40310 5.46754 5.47306 5.59576 5.64994 5.71739 5.77049 5.80220 5.84477 5.87573 5.97014 6.04033 6.10607 6.15152 6.25504 6.28646 6.34647 6.56126 6.57610 6.80317 7.00496 7.18318 7.33372 7.35191 7.66363 7.89833 7.97201 8.08006 8.33612 8.65850 8.90962 9.52608 11.00970 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.005104 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.998630 B = 5484.742690 C = 5969.915595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.084 0.916 5 C -0.145 4.145 6 C -0.119 4.119 7 C -0.108 4.108 8 C -0.115 4.115 9 H 0.112 0.888 10 C 0.524 3.476 11 O -0.565 6.565 12 N -0.600 5.600 13 C 0.114 3.886 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.038 3.962 17 H 0.031 0.969 18 C -0.517 4.517 19 H 0.057 0.943 20 C 0.065 3.935 21 N -0.886 5.886 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.110 3.890 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.035 0.965 41 H 0.095 0.905 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 9.759 -7.928 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.102 0.898 5 C -0.182 4.182 6 C -0.156 4.156 7 C -0.146 4.146 8 C -0.136 4.136 9 H 0.130 0.870 10 C 0.313 3.687 11 O -0.445 6.445 12 N -0.331 5.331 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.150 4.150 16 C 0.019 3.981 17 H 0.049 0.951 18 C -0.556 4.556 19 H 0.075 0.925 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.011 4.011 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.664 9.645 -7.571 14.460 hybrid contribution 0.834 -0.362 -0.124 0.918 sum -6.830 9.284 -7.694 13.858 Atomic orbital electron populations 1.22743 0.81268 1.02463 0.99785 1.87906 1.19569 1.27302 1.94777 1.22997 0.93642 0.85241 0.94014 0.89843 1.22812 0.98725 0.99372 0.97337 1.22016 0.97830 0.98815 0.96974 1.21983 0.99935 0.96472 0.96224 1.22229 0.97626 1.01733 0.92038 0.86990 1.20293 0.83192 0.76919 0.88341 1.90587 1.26692 1.48485 1.78781 1.48268 1.17165 1.60320 1.07340 1.21559 1.01556 0.97787 0.79924 1.21989 1.00893 0.96209 0.98110 1.21620 0.92006 1.01244 1.00081 1.18982 0.97238 0.90417 0.91424 0.95100 1.21046 1.03105 1.08158 1.23259 0.92463 1.24939 0.97258 0.96623 0.94912 1.69878 1.37384 1.17874 1.27334 0.86596 0.84195 0.78203 0.79001 1.20694 1.21247 1.19862 1.22189 0.83312 0.96780 0.98816 0.89883 0.93748 0.94494 0.91520 0.90372 0.91599 0.91129 0.91296 0.90259 0.90395 0.92364 0.92626 0.92463 0.94637 0.88711 0.92907 0.90926 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.85 101.05 1.10 1.52 16 2 O -0.38 -6.03 10.49 -35.23 -0.37 -6.40 16 3 C 0.10 1.45 2.59 -24.73 -0.06 1.38 16 4 H 0.08 1.27 6.96 -51.93 -0.36 0.91 16 5 C -0.14 -1.64 6.55 -25.07 -0.16 -1.80 16 6 C -0.12 -1.22 6.80 -25.61 -0.17 -1.40 16 7 C -0.11 -1.35 6.36 -25.61 -0.16 -1.51 16 8 C -0.12 -1.80 2.03 -90.10 -0.18 -1.98 16 9 H 0.11 1.86 6.41 -51.93 -0.33 1.52 16 10 C 0.52 9.82 6.79 -10.98 -0.07 9.75 16 11 O -0.57 -11.79 15.13 5.56 0.08 -11.71 16 12 N -0.60 -11.41 2.97 -172.76 -0.51 -11.92 16 13 C 0.11 2.09 6.44 -3.71 -0.02 2.06 16 14 C -0.13 -2.61 6.08 -26.61 -0.16 -2.78 16 15 C -0.11 -2.53 4.96 -26.69 -0.13 -2.67 16 16 C 0.04 0.92 2.25 -91.66 -0.21 0.71 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -13.41 8.56 -34.44 -0.29 -13.70 16 19 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 22 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.11 2.18 5.54 -3.71 -0.02 2.15 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.88 7.83 -51.93 -0.41 0.47 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 2.44 6.05 -51.93 -0.31 2.12 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.07 1.35 5.50 -51.93 -0.29 1.06 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -29.50 341.64 -8.23 -37.73 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.52 Total: 2.26 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.66 Total: -6.63 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.11 Total: -35.93 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.29 Total: -18.11 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.50 -8.23 -37.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353741449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.655 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds