Wall clock time and date at job start Tue Mar 31 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00272 * 2 1 4 4 H 1.09007 * 110.81318 * 26.66188 * 3 2 1 5 5 C 1.54886 * 110.75896 * 263.33140 * 3 2 1 6 6 C 1.54265 * 104.19925 * 203.74084 * 5 3 2 7 7 C 1.53881 * 106.59511 * 23.60577 * 6 5 3 8 8 C 1.54264 * 106.59879 * 0.02562 * 7 6 5 9 9 H 1.09003 * 110.48681 * 95.19864 * 8 7 6 10 10 C 1.50698 * 110.48899 * 217.71041 * 8 7 6 11 11 O 1.21280 * 120.00095 * 98.04207 * 10 8 7 12 12 N 1.34782 * 119.99978 * 278.05175 * 10 8 7 13 13 C 1.46929 * 120.63014 * 175.11466 * 12 10 8 14 14 C 1.53187 * 108.77376 * 126.41236 * 13 12 10 15 15 C 1.53041 * 109.34062 * 54.61561 * 14 13 12 16 16 C 1.53032 * 109.54280 * 298.68415 * 15 14 13 17 17 H 1.08999 * 109.47234 * 301.36592 * 16 15 14 18 18 C 1.50696 * 109.52604 * 181.29709 * 16 15 14 19 19 H 1.08004 * 120.00495 * 240.11389 * 18 16 15 20 20 C 1.37881 * 119.99776 * 60.11730 * 18 16 15 21 21 N 1.31506 * 120.00190 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99865 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47460 * 89.99681 * 22 20 18 24 24 H 1.48502 * 109.47068 * 209.99593 * 22 20 18 25 25 H 1.48504 * 109.47348 * 329.99504 * 22 20 18 26 26 C 1.46930 * 120.62873 * 355.13380 * 12 10 8 27 27 H 1.09006 * 109.46955 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47169 * 299.99882 * 1 2 3 29 29 H 1.09002 * 109.47114 * 59.99888 * 1 2 3 30 30 H 1.09000 * 110.48681 * 85.05982 * 5 3 2 31 31 H 1.09004 * 110.59611 * 322.47724 * 5 3 2 32 32 H 1.08994 * 110.03216 * 264.32857 * 6 5 3 33 33 H 1.08998 * 110.07345 * 142.90960 * 6 5 3 34 34 H 1.08995 * 110.03117 * 240.71786 * 7 6 5 35 35 H 1.09006 * 110.03060 * 119.28443 * 7 6 5 36 36 H 1.09001 * 109.58677 * 6.62653 * 13 12 10 37 37 H 1.09002 * 109.70066 * 246.26760 * 13 12 10 38 38 H 1.09003 * 109.49712 * 174.58291 * 14 13 12 39 39 H 1.08999 * 109.49772 * 294.65371 * 14 13 12 40 40 H 1.09006 * 109.45932 * 58.67660 * 15 14 13 41 41 H 1.09004 * 109.46027 * 178.62973 * 15 14 13 42 42 H 0.97006 * 120.00263 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.58587 * 353.37691 * 26 12 10 44 44 H 1.09004 * 109.58204 * 113.80316 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3360 2.0297 0.4572 5 6 2.3873 1.7385 -1.4385 6 6 3.4949 2.7934 -1.2381 7 6 4.1257 2.5125 0.1371 8 6 3.3798 1.2963 0.7239 9 1 3.9221 0.3757 0.5083 10 6 3.1912 1.4601 2.2101 11 8 2.1373 1.8729 2.6458 12 7 4.1938 1.1479 3.0551 13 6 4.0645 1.4020 4.4964 14 6 4.3550 0.1027 5.2541 15 6 5.7238 -0.4356 4.8309 16 6 5.7121 -0.7422 3.3317 17 1 4.9310 -1.4712 3.1160 18 6 7.0498 -1.3020 2.9217 19 1 7.6450 -0.7903 2.1798 20 6 7.5139 -2.4676 3.4936 21 7 6.7895 -3.0905 4.3973 22 14 9.1724 -3.1612 2.9859 23 1 10.2324 -2.6016 3.8626 24 1 9.1515 -4.6403 3.1168 25 1 9.4519 -2.7931 1.5746 26 6 5.4370 0.5475 2.5522 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.5269 2.1796 -1.9419 31 1 2.7671 0.8898 -2.0074 32 1 3.0643 3.7945 -1.2538 33 1 4.2478 2.6986 -2.0206 34 1 4.0012 3.3773 0.7886 35 1 5.1846 2.2806 0.0218 36 1 3.0512 1.7361 4.7191 37 1 4.7771 2.1690 4.7997 38 1 4.3570 0.2993 6.3262 39 1 3.5865 -0.6342 5.0207 40 1 6.4889 0.3114 5.0424 41 1 5.9432 -1.3472 5.3868 42 1 7.1158 -3.9107 4.7994 43 1 5.3291 0.3179 1.4921 44 1 6.2631 1.2442 2.6952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353741449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:41 Heat of formation + Delta-G solvation = -117.279278 kcal Electronic energy + Delta-G solvation = -23518.978769 eV Core-core repulsion = 20241.651860 eV Total energy + Delta-G solvation = -3277.326910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.54481 -39.55925 -38.22778 -36.89044 -35.18375 -33.39676 -31.98032 -30.18655 -29.25750 -27.11392 -26.95086 -26.06099 -23.61336 -22.54757 -21.50312 -21.08966 -19.75783 -18.70903 -18.19032 -17.40658 -17.33457 -16.57449 -16.14366 -15.89218 -15.74666 -15.47367 -15.10127 -14.77104 -14.60097 -14.37795 -14.05314 -13.80269 -13.57982 -13.44039 -13.14077 -12.83210 -12.72304 -12.56155 -12.45498 -12.28526 -12.14484 -11.95795 -11.84917 -11.61163 -11.56139 -11.43033 -11.24203 -10.81085 -10.63237 -10.49916 -10.40401 -9.50125 -8.06786 -6.22341 1.45214 1.46515 1.55692 1.59612 2.08790 2.46539 2.81994 3.20904 3.37066 3.55668 3.81287 3.98806 4.17656 4.23615 4.27299 4.28132 4.38831 4.43829 4.46481 4.51556 4.54052 4.56943 4.60450 4.68733 4.79008 4.80261 4.86528 4.94585 5.00093 5.04650 5.09326 5.15512 5.21526 5.26665 5.39222 5.42488 5.62252 5.64756 5.93480 6.09645 6.27196 6.33157 6.50159 6.89515 7.16444 7.46724 8.97425 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.005104 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.998630 B = 5484.742690 C = 5969.915595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.095 3.905 4 H 0.073 0.927 5 C -0.136 4.136 6 C -0.112 4.112 7 C -0.104 4.104 8 C -0.118 4.118 9 H 0.099 0.901 10 C 0.519 3.481 11 O -0.590 6.590 12 N -0.605 5.605 13 C 0.115 3.885 14 C -0.124 4.124 15 C -0.105 4.105 16 C 0.036 3.964 17 H -0.014 1.014 18 C -0.529 4.529 19 H 0.065 0.935 20 C 0.014 3.986 21 N -0.918 5.918 22 Si 0.955 3.045 23 H -0.275 1.275 24 H -0.290 1.290 25 H -0.264 1.264 26 C 0.125 3.875 27 H 0.093 0.907 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.259 0.741 43 H 0.083 0.917 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 11.424 -9.581 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.037 3.963 4 H 0.091 0.909 5 C -0.174 4.174 6 C -0.149 4.149 7 C -0.142 4.142 8 C -0.139 4.139 9 H 0.117 0.883 10 C 0.309 3.691 11 O -0.472 6.472 12 N -0.336 5.336 13 C -0.007 4.007 14 C -0.163 4.163 15 C -0.143 4.143 16 C 0.017 3.983 17 H 0.005 0.995 18 C -0.568 4.568 19 H 0.084 0.916 20 C -0.185 4.185 21 N -0.558 5.558 22 Si 0.781 3.219 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.188 1.188 26 C 0.003 3.997 27 H 0.112 0.888 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.928 11.325 -9.236 16.173 hybrid contribution 0.535 -0.920 0.440 1.152 sum -6.393 10.405 -8.795 15.050 Atomic orbital electron populations 1.22896 0.79749 1.03486 1.00482 1.87858 1.21404 1.28391 1.95060 1.23115 0.92673 0.84532 0.96005 0.90901 1.22775 0.99897 0.99717 0.94999 1.22033 0.97815 0.99181 0.95915 1.22024 1.00216 0.94681 0.97304 1.22330 0.99002 1.02615 0.89977 0.88292 1.20893 0.82486 0.76046 0.89675 1.90566 1.27446 1.49642 1.79508 1.48341 1.17122 1.60295 1.07811 1.21597 1.02274 0.97303 0.79512 1.21873 0.98142 0.96300 0.99936 1.21440 0.93938 0.99951 0.98971 1.18918 0.95121 0.91424 0.92854 0.99545 1.21438 1.03851 1.08358 1.23112 0.91646 1.25737 1.00626 0.97172 0.94979 1.70039 1.39064 1.18178 1.28503 0.85596 0.80124 0.77072 0.79095 1.20080 1.21638 1.18778 1.21946 0.84064 0.95002 0.98682 0.88814 0.94835 0.91942 0.89525 0.90487 0.90030 0.89184 0.91532 0.89331 0.90343 0.89995 0.90112 0.94828 0.94006 0.92068 0.93162 0.89901 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.85 113.37 1.23 1.96 16 2 O -0.41 -12.98 10.49 -148.98 -1.56 -14.54 16 3 C 0.09 2.68 2.59 31.89 0.08 2.76 16 4 H 0.07 2.19 6.96 -2.38 -0.02 2.17 16 5 C -0.14 -2.74 6.55 31.67 0.21 -2.54 16 6 C -0.11 -1.94 6.80 31.32 0.21 -1.72 16 7 C -0.10 -2.37 6.36 31.32 0.20 -2.17 16 8 C -0.12 -3.60 2.03 -10.46 -0.02 -3.62 16 9 H 0.10 3.27 6.41 -2.39 -0.02 3.26 16 10 C 0.52 19.34 6.79 87.66 0.59 19.94 16 11 O -0.59 -24.66 15.13 -3.03 -0.05 -24.71 16 12 N -0.61 -22.75 2.97 -818.89 -2.43 -25.18 16 13 C 0.12 4.11 6.44 86.36 0.56 4.67 16 14 C -0.12 -4.88 6.08 30.67 0.19 -4.69 16 15 C -0.10 -4.83 4.96 30.62 0.15 -4.68 16 16 C 0.04 1.75 2.25 -11.47 -0.03 1.72 16 17 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 18 C -0.53 -27.51 8.56 25.60 0.22 -27.29 16 19 H 0.07 3.22 7.74 -2.91 -0.02 3.20 16 20 C 0.01 0.73 5.30 84.66 0.45 1.18 16 21 N -0.92 -52.43 11.32 21.45 0.24 -52.19 16 22 Si 0.96 42.10 29.54 68.60 2.03 44.13 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 26 C 0.12 4.84 5.54 86.36 0.48 5.32 16 27 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.55 7.83 -2.39 -0.02 1.53 16 35 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.08 2.81 7.00 -2.39 -0.02 2.80 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.06 3.25 6.05 -2.38 -0.01 3.24 16 42 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 43 H 0.08 3.03 5.50 -2.39 -0.01 3.01 16 44 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -64.91 341.64 3.71 -61.20 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.96 Total: 20.48 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.52 Total: -9.18 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -2.19 Total: -77.37 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.61 Total: -39.25 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -64.91 3.71 -61.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353741449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.079 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds