Wall clock time and date at job start Tue Mar 31 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99710 * 2 1 4 4 H 1.08990 * 110.01814 * 28.60413 * 3 2 1 5 5 C 1.54269 * 110.06905 * 267.18732 * 3 2 1 6 6 C 1.54888 * 104.19604 * 217.08194 * 5 3 2 7 7 C 1.54968 * 102.77606 * 37.92031 * 6 5 3 8 8 C 1.53875 * 110.03290 * 150.00175 * 3 2 1 9 9 H 1.09002 * 110.03288 * 238.66408 * 8 3 2 10 10 C 1.50707 * 110.03188 * 0.04437 * 8 3 2 11 11 O 1.21276 * 119.99874 * 95.83728 * 10 8 3 12 12 N 1.34778 * 119.99920 * 275.84179 * 10 8 3 13 13 C 1.46920 * 120.63093 * 355.39798 * 12 10 8 14 14 C 1.53194 * 108.77796 * 233.63659 * 13 12 10 15 15 C 1.53036 * 109.30907 * 305.36615 * 14 13 12 16 16 C 1.53040 * 109.53944 * 61.36467 * 15 14 13 17 17 H 1.09001 * 109.49758 * 58.62116 * 16 15 14 18 18 C 1.50699 * 109.49660 * 178.68200 * 16 15 14 19 19 H 1.07998 * 120.00400 * 120.00494 * 18 16 15 20 20 C 1.37884 * 120.00048 * 300.00148 * 18 16 15 21 21 N 1.31511 * 119.99941 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99805 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46951 * 269.99596 * 22 20 18 24 24 H 1.48495 * 109.47565 * 29.99930 * 22 20 18 25 25 H 1.48506 * 109.46983 * 150.00161 * 22 20 18 26 26 C 1.46921 * 120.62865 * 175.43142 * 12 10 8 27 27 H 1.08998 * 109.46825 * 60.00272 * 1 2 3 28 28 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47412 * 300.00016 * 1 2 3 30 30 H 1.08999 * 110.48717 * 335.76421 * 5 3 2 31 31 H 1.09000 * 110.48438 * 98.27398 * 5 3 2 32 32 H 1.08999 * 110.75638 * 156.25756 * 6 5 3 33 33 H 1.09001 * 110.75952 * 279.44777 * 6 5 3 34 34 H 1.09001 * 110.53047 * 203.42986 * 7 6 5 35 35 H 1.09003 * 110.47865 * 80.76506 * 7 6 5 36 36 H 1.09002 * 109.58651 * 113.84716 * 13 12 10 37 37 H 1.09005 * 109.70713 * 353.49289 * 13 12 10 38 38 H 1.09002 * 109.49477 * 185.41390 * 14 13 12 39 39 H 1.08998 * 109.49790 * 65.31693 * 14 13 12 40 40 H 1.08997 * 109.46162 * 301.34197 * 15 14 13 41 41 H 1.09004 * 109.45093 * 181.38167 * 15 14 13 42 42 H 0.97004 * 120.00252 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.58855 * 6.57079 * 26 12 10 44 44 H 1.09007 * 109.58244 * 246.15100 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0120 0.4903 5 6 2.2904 1.7602 -1.4473 6 6 3.6248 2.5406 -1.3486 7 6 4.4272 1.7173 -0.3095 8 6 3.3683 1.2779 0.7228 9 1 3.3575 1.9704 1.5645 10 6 3.6672 -0.1177 1.2068 11 8 4.3575 -0.8568 0.5375 12 7 3.1674 -0.5443 2.3835 13 6 2.4142 0.3701 3.2525 14 6 3.0435 0.3536 4.6491 15 6 3.1070 -1.0881 5.1585 16 6 3.9846 -1.9232 4.2233 17 1 4.9835 -1.4892 4.1778 18 6 4.0728 -3.3348 4.7435 19 1 3.7256 -4.1571 4.1355 20 6 4.5969 -3.5766 5.9958 21 7 5.0192 -2.5753 6.7364 22 14 4.7068 -5.3265 6.6402 23 1 3.4584 -5.6645 7.3700 24 1 4.8838 -6.2632 5.5017 25 1 5.8656 -5.4427 7.5616 26 6 3.3661 -1.9324 2.8220 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 2.4009 0.8971 -2.1037 31 1 1.4916 2.4102 -1.8043 32 1 4.1371 2.5529 -2.3106 33 1 3.4531 3.5558 -0.9910 34 1 5.1878 2.3376 0.1647 35 1 4.8833 0.8474 -0.7821 36 1 1.3764 0.0426 3.3154 37 1 2.4544 1.3805 2.8456 38 1 2.4374 0.9531 5.3283 39 1 4.0510 0.7665 4.5991 40 1 2.1017 -1.5086 5.1848 41 1 3.5319 -1.1001 6.1623 42 1 5.3883 -2.7454 7.6172 43 1 4.0366 -2.4418 2.1299 44 1 2.4059 -2.4478 2.8497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353741450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:45 Heat of formation + Delta-G solvation = -94.459983 kcal Electronic energy + Delta-G solvation = -23711.478228 eV Core-core repulsion = 20435.140837 eV Total energy + Delta-G solvation = -3276.337391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20349 -38.23721 -36.67967 -35.61011 -33.41449 -31.27420 -30.45191 -29.00983 -28.29033 -26.15258 -25.01855 -24.45972 -21.69267 -21.31052 -20.88835 -19.32469 -18.19813 -17.27800 -16.44599 -16.12469 -15.83737 -15.24371 -14.79106 -14.57571 -14.35999 -13.88527 -13.75449 -13.45691 -13.20181 -12.71701 -12.66810 -12.35223 -12.06579 -11.96764 -11.52137 -11.49272 -11.35481 -11.14584 -10.95041 -10.86448 -10.74367 -10.66978 -10.61719 -10.19092 -9.90451 -9.71912 -9.59017 -9.36900 -9.08866 -8.75459 -8.33907 -7.72428 -5.97863 -4.04535 3.22895 3.32089 3.38815 3.43044 3.63008 3.80175 4.42973 4.45906 4.52008 4.83385 5.05861 5.14232 5.22363 5.26329 5.27460 5.32252 5.39480 5.52642 5.54346 5.58012 5.68263 5.71625 5.77553 5.84454 5.90087 5.95864 6.11777 6.19239 6.39743 6.39862 6.50016 6.56353 6.75872 6.90096 7.10128 7.18654 7.26095 7.40337 7.73723 7.98963 8.12483 8.20352 8.43631 8.86745 8.99966 9.59999 11.07602 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.004442 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.877685 B = 6302.315284 C = 6372.320235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.098 3.902 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.118 4.118 9 H 0.098 0.902 10 C 0.536 3.464 11 O -0.550 6.550 12 N -0.597 5.597 13 C 0.114 3.886 14 C -0.136 4.136 15 C -0.111 4.111 16 C 0.039 3.961 17 H 0.028 0.972 18 C -0.512 4.512 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.274 1.274 25 H -0.287 1.287 26 C 0.122 3.878 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.094 0.906 42 H 0.260 0.740 43 H 0.077 0.923 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 12.741 -11.346 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.040 3.960 4 H 0.086 0.914 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.140 4.140 9 H 0.116 0.884 10 C 0.323 3.677 11 O -0.428 6.428 12 N -0.328 5.328 13 C -0.010 4.010 14 C -0.174 4.174 15 C -0.149 4.149 16 C 0.020 3.980 17 H 0.047 0.953 18 C -0.550 4.550 19 H 0.075 0.925 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.199 1.199 25 H -0.213 1.213 26 C 0.001 3.999 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.942 12.191 -11.511 18.553 hybrid contribution -0.325 -0.594 0.636 0.929 sum -8.267 11.597 -10.875 17.919 Atomic orbital electron populations 1.22757 0.81401 1.02797 0.99441 1.88103 1.19264 1.26639 1.94796 1.22674 0.92963 0.85145 0.95236 0.91446 1.22880 0.97766 1.00563 0.97006 1.22415 0.95498 0.98341 0.99536 1.22378 0.96507 1.00773 0.95441 1.22173 0.95813 0.96636 0.99342 0.88397 1.19812 0.78924 0.88268 0.80686 1.90604 1.39088 1.57057 1.56068 1.48080 1.53468 1.12859 1.18388 1.21670 0.95245 0.92517 0.91556 1.22022 1.00087 1.00803 0.94494 1.21613 0.99043 0.90619 1.03630 1.18975 0.94786 0.95748 0.88470 0.95350 1.21100 1.40848 0.92113 1.00986 0.92525 1.24933 0.95112 0.96929 0.96848 1.69875 1.41898 1.30292 1.10831 0.86591 0.77510 0.85087 0.78803 1.20739 1.19855 1.21273 1.21899 1.00130 0.79325 0.98572 0.94405 0.89718 0.94127 0.90183 0.91553 0.91090 0.91472 0.91194 0.89041 0.92370 0.91618 0.92659 0.92442 0.94693 0.88727 0.93053 0.90491 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.45 16 2 O -0.37 -5.39 8.82 -35.23 -0.31 -5.70 16 3 C 0.10 1.19 3.35 -25.61 -0.09 1.11 16 4 H 0.07 0.66 7.80 -51.93 -0.41 0.26 16 5 C -0.14 -1.50 6.56 -25.07 -0.16 -1.66 16 6 C -0.12 -1.16 6.91 -24.70 -0.17 -1.33 16 7 C -0.11 -1.44 6.30 -25.03 -0.16 -1.60 16 8 C -0.12 -1.65 2.47 -90.65 -0.22 -1.88 16 9 H 0.10 1.19 6.21 -51.93 -0.32 0.87 16 10 C 0.54 10.27 5.53 -10.98 -0.06 10.21 16 11 O -0.55 -12.61 14.94 5.56 0.08 -12.53 16 12 N -0.60 -11.61 2.97 -172.77 -0.51 -12.12 16 13 C 0.11 1.83 6.31 -3.71 -0.02 1.81 16 14 C -0.14 -2.47 6.08 -26.61 -0.16 -2.63 16 15 C -0.11 -2.54 4.96 -26.69 -0.13 -2.67 16 16 C 0.04 0.99 2.25 -91.66 -0.21 0.79 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 18 C -0.51 -14.16 8.56 -34.44 -0.29 -14.45 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.30 11.31 55.43 0.63 -24.67 16 22 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.12 2.77 5.66 -3.72 -0.02 2.75 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.41 6.78 -51.93 -0.35 1.06 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.86 5.44 -51.93 -0.28 0.58 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.08 1.90 7.00 -51.93 -0.36 1.54 16 44 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -31.59 339.19 -8.22 -39.81 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.49 Total: 0.20 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.70 Total: -6.47 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.11 Total: -36.80 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.23 Total: -18.23 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.59 -8.22 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353741450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.651 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds