Wall clock time and date at job start Tue Mar 31 2020 05:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47661 * 2 1 4 4 C 1.53226 * 109.49105 * 120.03554 * 2 1 3 5 5 C 1.51264 * 108.53896 * 65.36099 * 4 2 1 6 6 O 1.20761 * 120.84738 * 231.32288 * 5 4 2 7 7 C 1.51268 * 118.30179 * 51.34558 * 5 4 2 8 8 C 1.53230 * 108.53405 * 308.65053 * 7 5 4 9 9 C 1.52953 * 109.48091 * 239.97368 * 2 1 3 10 10 H 1.09004 * 109.41170 * 183.56902 * 9 2 1 11 11 C 1.50703 * 109.41563 * 63.71349 * 9 2 1 12 12 O 1.21282 * 120.00019 * 359.97438 * 11 9 2 13 13 N 1.34771 * 120.00022 * 179.97438 * 11 9 2 14 14 C 1.46504 * 119.99846 * 179.97438 * 13 11 9 15 15 C 1.53009 * 109.47047 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.46769 * 60.00145 * 15 14 13 17 17 C 1.53003 * 109.47024 * 300.00369 * 15 14 13 18 18 C 1.50693 * 109.46926 * 179.97438 * 15 14 13 19 19 H 1.08000 * 120.00569 * 358.05229 * 18 15 14 20 20 C 1.37883 * 119.99892 * 178.04629 * 18 15 14 21 21 N 1.31517 * 119.99812 * 2.89962 * 20 18 15 22 22 Si 1.86795 * 120.00033 * 182.89134 * 20 18 15 23 23 H 1.48503 * 109.47152 * 84.99409 * 22 20 18 24 24 H 1.48497 * 109.47596 * 324.99705 * 22 20 18 25 25 H 1.48499 * 109.47345 * 204.99136 * 22 20 18 26 26 H 1.08998 * 109.47320 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47082 * 300.02739 * 1 2 3 28 28 H 1.09004 * 109.46909 * 60.02584 * 1 2 3 29 29 H 1.09004 * 109.62591 * 185.07296 * 4 2 1 30 30 H 1.09000 * 109.62621 * 305.45238 * 4 2 1 31 31 H 1.09000 * 109.62852 * 68.36698 * 7 5 4 32 32 H 1.08996 * 109.62856 * 188.74812 * 7 5 4 33 33 H 1.08993 * 109.48698 * 294.64578 * 8 7 5 34 34 H 1.09003 * 109.47742 * 174.60540 * 8 7 5 35 35 H 0.96994 * 120.00443 * 359.97438 * 13 11 9 36 36 H 1.08992 * 109.47315 * 60.00295 * 14 13 11 37 37 H 1.08997 * 109.47259 * 299.99580 * 14 13 11 38 38 H 1.09001 * 109.46690 * 180.02562 * 16 15 14 39 39 H 1.08999 * 109.47466 * 299.99818 * 16 15 14 40 40 H 1.08997 * 109.47625 * 60.00285 * 16 15 14 41 41 H 1.09004 * 109.46489 * 294.05415 * 17 15 14 42 42 H 1.08992 * 109.47480 * 54.05364 * 17 15 14 43 43 H 1.08993 * 109.46657 * 174.05900 * 17 15 14 44 44 H 0.96997 * 119.99974 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0413 -0.7230 1.2505 5 6 1.6382 -2.1783 1.1632 6 8 1.0655 -2.7182 2.0791 7 6 1.9711 -2.9402 -0.1005 8 6 1.4622 -2.1368 -1.3020 9 6 2.0401 -0.7216 -1.2485 10 1 3.1283 -0.7766 -1.2159 11 6 1.6138 0.0404 -2.4768 12 8 0.9657 1.0593 -2.3638 13 7 1.9527 -0.4104 -3.7008 14 6 1.5377 0.3300 -4.8949 15 6 2.0486 -0.3900 -6.1446 16 6 1.4654 -1.8036 -6.1928 17 6 3.5758 -0.4696 -6.0989 18 6 1.6212 0.3713 -7.3729 19 1 1.0164 1.2607 -7.2739 20 6 2.0023 -0.0674 -8.6233 21 7 2.6903 -1.1813 -8.7478 22 14 1.5411 0.9201 -10.1403 23 1 2.5509 1.9861 -10.3628 24 1 0.2052 1.5375 -9.9419 25 1 1.5009 0.0220 -11.3222 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5142 0.8897 28 1 -0.3633 0.5135 -0.8903 29 1 3.1276 -0.6464 1.2993 30 1 1.6021 -0.2712 2.1399 31 1 3.0508 -3.0688 -0.1768 32 1 1.4869 -3.9164 -0.0778 33 1 0.3739 -2.0865 -1.2711 34 1 1.7778 -2.6237 -2.2247 35 1 2.4713 -1.2251 -3.7912 36 1 1.9535 1.3370 -4.8608 37 1 0.4497 0.3870 -4.9273 38 1 1.8297 -2.3167 -7.0829 39 1 1.7741 -2.3546 -5.3044 40 1 0.3774 -1.7470 -6.2254 41 1 3.9942 0.5344 -6.1710 42 1 3.8879 -0.9267 -5.1600 43 1 3.9333 -1.0729 -6.9333 44 1 2.9581 -1.4902 -9.6274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527972301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:58 Heat of formation + Delta-G solvation = -118.253916 kcal Electronic energy + Delta-G solvation = -23068.986762 eV Core-core repulsion = 19791.617589 eV Total energy + Delta-G solvation = -3277.369173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71100 -40.30368 -38.35225 -37.27413 -35.03138 -33.18917 -32.49307 -30.41685 -28.39968 -27.52504 -27.36767 -26.39754 -24.06898 -22.79027 -21.19063 -20.57111 -19.39459 -18.38466 -17.70781 -17.15940 -16.67506 -16.49560 -16.25089 -16.10042 -15.67342 -15.32155 -14.81689 -14.78391 -14.66898 -14.38936 -13.99304 -13.61394 -13.38212 -13.17334 -13.06075 -12.87013 -12.69838 -12.60980 -12.57048 -12.55332 -12.21591 -12.13101 -11.98827 -11.76719 -11.44874 -11.44010 -11.20156 -10.70189 -10.50129 -10.37823 -10.34672 -9.83281 -8.01385 -6.15837 0.98753 1.42846 1.46031 1.53031 1.77571 2.36331 2.52623 3.18420 3.22803 3.53795 3.69879 3.80727 4.00392 4.22749 4.27050 4.29607 4.42012 4.48444 4.55669 4.58333 4.72308 4.77107 4.79842 4.86694 4.92420 5.04082 5.09356 5.10414 5.13554 5.17600 5.18546 5.23372 5.36419 5.40020 5.46948 5.68478 5.69892 5.71518 6.18899 6.25175 6.45725 6.53486 6.77127 6.88742 7.43287 7.51711 8.97570 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.003648 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.151882 B = 7673.487810 C = 8039.528039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.059 4.059 3 H 0.086 0.914 4 C -0.159 4.159 5 C 0.365 3.635 6 O -0.504 6.504 7 C -0.161 4.161 8 C -0.107 4.107 9 C -0.100 4.100 10 H 0.137 0.863 11 C 0.508 3.492 12 O -0.584 6.584 13 N -0.710 5.710 14 C 0.149 3.851 15 C 0.050 3.950 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.530 4.530 19 H 0.042 0.958 20 C 0.030 3.970 21 N -0.897 5.897 22 Si 0.941 3.059 23 H -0.279 1.279 24 H -0.277 1.277 25 H -0.284 1.284 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.409 0.591 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.042 0.958 43 H 0.059 0.941 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -3.859 16.151 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.078 4.078 3 H 0.105 0.895 4 C -0.197 4.197 5 C 0.244 3.756 6 O -0.381 6.381 7 C -0.198 4.198 8 C -0.145 4.145 9 C -0.121 4.121 10 H 0.155 0.845 11 C 0.295 3.705 12 O -0.464 6.464 13 N -0.361 5.361 14 C 0.025 3.975 15 C 0.050 3.950 16 C -0.177 4.177 17 C -0.175 4.175 18 C -0.569 4.569 19 H 0.060 0.940 20 C -0.170 4.170 21 N -0.536 5.536 22 Si 0.768 3.232 23 H -0.205 1.205 24 H -0.203 1.203 25 H -0.209 1.209 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.150 0.850 30 H 0.108 0.892 31 H 0.153 0.847 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.247 0.753 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.730 -3.543 16.533 17.128 hybrid contribution -0.343 0.485 -1.394 1.515 sum 2.387 -3.058 15.139 15.628 Atomic orbital electron populations 1.22074 0.95965 1.01181 1.02510 1.20783 0.95674 0.99813 0.91510 0.89539 1.22401 1.05223 0.92865 0.99175 1.25356 0.72322 0.91075 0.86863 1.90406 1.33556 1.72633 1.41463 1.22309 1.05944 0.99458 0.92080 1.21565 1.01172 0.92557 0.99204 1.21481 1.04324 0.95229 0.91096 0.84541 1.21177 0.78868 0.85067 0.85351 1.90633 1.41313 1.27286 1.87204 1.46158 1.55722 1.28884 1.05373 1.21192 0.97307 0.94473 0.84557 1.18360 0.93295 0.93086 0.90300 1.21661 0.97692 0.97808 1.00520 1.21640 0.96921 0.99117 0.99849 1.21287 1.32936 1.10715 0.91963 0.93986 1.25407 0.95095 0.95700 1.00755 1.69913 1.38631 1.21433 1.23609 0.85843 0.78461 0.78902 0.80002 1.20483 1.20267 1.20915 0.93339 0.92339 0.92450 0.84983 0.89215 0.84711 0.88879 0.91950 0.88589 0.75327 0.94490 0.94760 0.92170 0.94002 0.96580 0.96520 0.93897 0.92238 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 8.31 71.98 0.60 -3.12 16 2 C -0.06 -1.09 2.33 -10.73 -0.02 -1.11 16 3 H 0.09 1.72 8.00 -2.39 -0.02 1.70 16 4 C -0.16 -2.22 5.65 30.10 0.17 -2.05 16 5 C 0.37 6.44 5.75 29.46 0.17 6.61 16 6 O -0.50 -13.06 17.89 -1.45 -0.03 -13.09 16 7 C -0.16 -2.01 6.17 30.11 0.19 -1.82 16 8 C -0.11 -1.67 4.88 30.66 0.15 -1.52 16 9 C -0.10 -1.80 2.20 -11.57 -0.03 -1.82 16 10 H 0.14 1.56 8.14 -2.38 -0.02 1.54 16 11 C 0.51 14.54 6.87 87.66 0.60 15.14 16 12 O -0.58 -21.65 13.88 -3.04 -0.04 -21.69 16 13 N -0.71 -21.42 4.77 -463.05 -2.21 -23.63 16 14 C 0.15 5.96 4.50 86.38 0.39 6.35 16 15 C 0.05 2.21 0.50 -52.93 -0.03 2.18 16 16 C -0.12 -5.00 8.09 71.98 0.58 -4.42 16 17 C -0.12 -4.91 8.04 71.98 0.58 -4.33 16 18 C -0.53 -27.46 8.01 25.60 0.21 -27.25 16 19 H 0.04 2.24 7.75 -2.91 -0.02 2.21 16 20 C 0.03 1.57 5.14 84.66 0.44 2.01 16 21 N -0.90 -46.76 9.43 21.45 0.20 -46.56 16 22 Si 0.94 42.01 29.54 68.60 2.03 44.04 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H 0.05 1.10 5.61 -2.39 -0.01 1.08 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.68 5.83 -2.39 -0.01 1.67 16 29 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.20 6.20 -2.39 -0.01 1.19 16 34 H 0.10 1.30 7.44 -2.39 -0.02 1.29 16 35 H 0.41 10.27 5.50 -92.71 -0.51 9.76 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 2.86 6.12 -2.39 -0.01 2.84 16 39 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 40 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.04 1.43 6.71 -2.39 -0.02 1.42 16 43 H 0.06 2.79 6.22 -2.39 -0.01 2.77 16 44 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 Total: -1.00 -64.38 335.22 4.42 -59.96 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.48 Total: 16.13 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 3.99 Total: -15.16 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -2.01 Total: -70.19 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.07 Total: -34.78 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -64.38 4.42 -59.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527972301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.292 kcal (2) G-P(sol) polarization free energy of solvation -64.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds