Wall clock time and date at job start Tue Mar 31 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49337 * 2 1 4 4 C 1.53229 * 109.48500 * 239.96091 * 2 1 3 5 5 C 1.51268 * 108.53507 * 294.64716 * 4 2 1 6 6 O 1.20762 * 120.84592 * 128.67198 * 5 4 2 7 7 C 1.51262 * 118.30169 * 308.65235 * 5 4 2 8 8 C 1.53230 * 108.53809 * 51.34637 * 7 5 4 9 9 C 1.52958 * 109.40580 * 305.37352 * 8 7 5 10 10 H 1.09002 * 109.40959 * 303.56535 * 9 8 7 11 11 C 1.50697 * 109.41082 * 183.70556 * 9 8 7 12 12 O 1.21283 * 119.99456 * 239.99427 * 11 9 8 13 13 N 1.34770 * 120.00482 * 60.00299 * 11 9 8 14 14 C 1.46493 * 120.00393 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47400 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47068 * 60.00416 * 15 14 13 17 17 C 1.53000 * 109.47166 * 300.00262 * 15 14 13 18 18 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 15 14 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 15 14 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 15 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 15 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 H 1.09000 * 109.47081 * 299.97020 * 1 2 3 27 27 H 1.08996 * 109.46916 * 59.97343 * 1 2 3 28 28 H 1.09000 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.62665 * 174.93340 * 4 2 1 30 30 H 1.08996 * 109.62244 * 54.36140 * 4 2 1 31 31 H 1.08997 * 109.62767 * 291.63033 * 7 5 4 32 32 H 1.09004 * 109.78372 * 171.15267 * 7 5 4 33 33 H 1.08997 * 109.48160 * 185.38975 * 8 7 5 34 34 H 1.08998 * 109.49080 * 65.36050 * 8 7 5 35 35 H 0.97000 * 119.99567 * 359.97438 * 13 11 9 36 36 H 1.09004 * 109.46794 * 59.99777 * 14 13 11 37 37 H 1.09000 * 109.47559 * 300.00254 * 14 13 11 38 38 H 1.09001 * 109.47094 * 180.02562 * 16 15 14 39 39 H 1.09003 * 109.46851 * 300.00074 * 16 15 14 40 40 H 1.09003 * 109.47532 * 60.00149 * 16 15 14 41 41 H 1.09004 * 109.47084 * 299.99410 * 17 15 14 42 42 H 1.08994 * 109.47175 * 59.99981 * 17 15 14 43 43 H 1.09001 * 109.47192 * 179.97438 * 17 15 14 44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7231 -1.2505 5 6 1.6377 -2.1784 -1.1631 6 8 1.0648 -2.7182 -2.0790 7 6 1.9705 -2.9402 0.1005 8 6 1.4621 -2.1367 1.3021 9 6 2.0402 -0.7216 1.2485 10 1 3.1283 -0.7759 1.2151 11 6 1.6140 0.0404 2.4768 12 8 0.9611 1.0562 2.3641 13 7 1.9586 -0.4068 3.7006 14 6 1.5448 0.3342 4.8946 15 6 2.0614 -0.3822 6.1440 16 6 3.5887 -0.4570 6.0941 17 6 1.4828 -1.7976 6.1962 18 6 1.6351 0.3798 7.3723 19 1 1.0536 1.2844 7.2720 20 6 1.9822 -0.0812 8.6246 21 7 2.6901 -1.1828 8.7468 22 14 1.4474 0.8592 10.1473 23 1 -0.0354 0.9306 10.1897 24 1 1.9446 0.1613 11.3602 25 1 2.0080 2.2336 10.1029 26 1 -0.3633 0.5134 0.8903 27 1 -0.3633 0.5142 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1273 -0.6466 -1.2994 30 1 1.5993 -0.2734 -2.1396 31 1 3.0502 -3.0691 0.1767 32 1 1.4858 -3.9164 0.0814 33 1 1.7775 -2.6236 2.2248 34 1 0.3737 -2.0862 1.2715 35 1 2.4806 -1.2194 3.7907 36 1 0.4567 0.3872 4.9304 37 1 1.9566 1.3427 4.8573 38 1 3.9566 -0.9677 6.9840 39 1 3.8966 -1.0083 5.2057 40 1 4.0009 0.5514 6.0570 41 1 0.3946 -1.7442 6.2318 42 1 1.7907 -2.3489 5.3078 43 1 1.8511 -2.3081 7.0860 44 1 2.9346 -1.5069 9.6278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527972316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:04 Heat of formation + Delta-G solvation = -101.648403 kcal Electronic energy + Delta-G solvation = -23067.993902 eV Core-core repulsion = 19791.344798 eV Total energy + Delta-G solvation = -3276.649104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74667 -39.19578 -36.95934 -36.03167 -33.49030 -32.17892 -30.93564 -29.48802 -27.44005 -25.77237 -25.57812 -24.76751 -23.28742 -21.77215 -20.04993 -18.92951 -18.46399 -17.19957 -16.29647 -15.77657 -15.58863 -15.33558 -15.03731 -14.74239 -14.50986 -14.30169 -13.79250 -13.56655 -13.06339 -12.94591 -12.76748 -12.43999 -12.22463 -12.02685 -11.80677 -11.72625 -11.44055 -11.22258 -11.11068 -10.94385 -10.84835 -10.75462 -10.65257 -10.41918 -10.23182 -9.67569 -9.56920 -9.51244 -9.19275 -8.82971 -8.48136 -8.34062 -6.05299 -4.15477 1.75572 2.96892 3.27875 3.32407 3.35644 3.63695 3.90664 4.35271 4.37335 4.49453 4.69331 4.77480 4.93253 5.04722 5.14029 5.19387 5.21572 5.40381 5.44150 5.54385 5.62841 5.66647 5.81004 5.91068 6.01521 6.17980 6.21482 6.28710 6.41802 6.46477 6.74479 6.77214 6.88737 6.97373 6.99880 7.28471 7.31218 7.51411 7.65980 7.97020 8.00844 8.11557 8.34942 8.65829 8.85049 9.50538 10.95998 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.003648 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.533392 B = 7672.867471 C = 8032.218331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 H 0.090 0.910 4 C -0.167 4.167 5 C 0.364 3.636 6 O -0.462 6.462 7 C -0.168 4.168 8 C -0.110 4.110 9 C -0.111 4.111 10 H 0.100 0.900 11 C 0.510 3.490 12 O -0.547 6.547 13 N -0.715 5.715 14 C 0.131 3.869 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.397 0.603 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -2.911 -14.931 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.081 4.081 3 H 0.109 0.891 4 C -0.205 4.205 5 C 0.240 3.760 6 O -0.336 6.336 7 C -0.206 4.206 8 C -0.148 4.148 9 C -0.132 4.132 10 H 0.118 0.882 11 C 0.295 3.705 12 O -0.425 6.425 13 N -0.365 5.365 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.134 4.134 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.233 0.767 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.146 -2.584 -15.309 15.567 hybrid contribution 0.123 0.117 1.032 1.045 sum 1.269 -2.467 -14.277 14.544 Atomic orbital electron populations 1.22118 0.94332 1.01595 1.03774 1.20829 0.97052 0.99634 0.90573 0.89125 1.22433 1.03243 0.94284 1.00508 1.24902 0.73818 0.90412 0.86841 1.90404 1.31675 1.71709 1.39822 1.22310 1.03902 1.00170 0.94225 1.21587 1.02120 0.93164 0.97912 1.21439 1.02220 0.95535 0.94021 0.88192 1.20340 0.80148 0.85403 0.84639 1.90631 1.39705 1.25516 1.86667 1.46342 1.55090 1.28930 1.06172 1.21713 0.98825 0.95029 0.83534 1.18350 0.92621 0.92916 0.90596 1.21824 0.97934 0.99038 0.99978 1.21827 0.98612 0.98225 1.00129 1.20950 1.34223 1.09419 0.90012 0.92522 1.24873 0.94805 0.94938 0.98829 1.69790 1.37832 1.21469 1.23342 0.86637 0.79047 0.80026 0.82173 1.20279 1.21320 1.20279 0.89485 0.92823 0.93349 0.88286 0.89088 0.88049 0.89004 0.89848 0.90258 0.76746 0.92748 0.92740 0.89641 0.97538 0.95460 0.95467 0.97549 0.89599 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.31 37.16 0.31 -1.60 16 2 C -0.06 -0.64 2.33 -90.52 -0.21 -0.86 16 3 H 0.09 1.00 8.00 -51.93 -0.42 0.58 16 4 C -0.17 -1.44 5.65 -27.49 -0.16 -1.59 16 5 C 0.36 3.73 5.75 -28.48 -0.16 3.57 16 6 O -0.46 -6.36 17.89 6.00 0.11 -6.25 16 7 C -0.17 -1.38 6.17 -27.49 -0.17 -1.55 16 8 C -0.11 -1.04 4.88 -26.63 -0.13 -1.17 16 9 C -0.11 -1.17 2.20 -91.81 -0.20 -1.38 16 10 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 11 C 0.51 7.73 6.87 -10.99 -0.08 7.65 16 12 O -0.55 -10.17 13.87 5.55 0.08 -10.09 16 13 N -0.72 -11.50 4.83 -60.30 -0.29 -11.79 16 14 C 0.13 2.64 4.50 -4.05 -0.02 2.63 16 15 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 16 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 17 C -0.13 -2.81 8.07 37.16 0.30 -2.51 16 18 C -0.51 -12.96 8.01 -34.44 -0.28 -13.24 16 19 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.89 -23.06 9.35 55.43 0.52 -22.54 16 22 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H 0.09 1.26 5.82 -51.93 -0.30 0.95 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.56 5.61 -51.93 -0.29 0.27 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.74 7.46 -51.93 -0.39 0.36 16 34 H 0.08 0.84 6.20 -51.93 -0.32 0.52 16 35 H 0.40 5.70 5.53 -40.82 -0.23 5.47 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 2.06 6.08 -51.93 -0.32 1.74 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 43 H 0.09 2.07 6.06 -51.93 -0.31 1.76 16 44 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -28.81 335.20 -7.27 -36.08 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.06 Total: 3.95 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.66 Total: -9.76 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.23 Total: -34.33 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.18 Total: -16.34 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.81 -7.27 -36.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527972316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.567 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds