Wall clock time and date at job start Tue Mar 31 2020 05:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49848 * 2 1 4 4 C 1.53229 * 109.48258 * 239.96729 * 2 1 3 5 5 C 1.51271 * 108.53675 * 185.39671 * 4 2 1 6 6 O 1.20758 * 120.84466 * 231.36570 * 5 4 2 7 7 C 1.51261 * 118.30172 * 51.34618 * 5 4 2 8 8 C 1.53223 * 108.53791 * 308.65418 * 7 5 4 9 9 C 1.52957 * 109.40778 * 54.62655 * 8 7 5 10 10 H 1.08999 * 109.35499 * 56.47319 * 9 8 7 11 11 C 1.50693 * 109.41616 * 176.29792 * 9 8 7 12 12 O 1.21281 * 120.00042 * 36.35126 * 11 9 8 13 13 N 1.34777 * 119.99899 * 216.35555 * 11 9 8 14 14 C 1.46504 * 119.99790 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.46930 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47292 * 59.99573 * 15 14 13 17 17 C 1.53003 * 109.46984 * 299.99416 * 15 14 13 18 18 C 1.50702 * 109.47220 * 179.97438 * 15 14 13 19 19 H 1.08006 * 119.99518 * 359.97438 * 18 15 14 20 20 C 1.37874 * 120.00215 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99915 * 359.97438 * 20 18 15 22 22 Si 1.86794 * 120.00203 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47678 * 180.02562 * 22 20 18 24 24 H 1.48498 * 109.47264 * 300.00275 * 22 20 18 25 25 H 1.48502 * 109.47176 * 59.99809 * 22 20 18 26 26 H 1.09003 * 109.46729 * 305.83119 * 1 2 3 27 27 H 1.09000 * 109.46723 * 65.82622 * 1 2 3 28 28 H 1.08996 * 109.47301 * 185.82803 * 1 2 3 29 29 H 1.09008 * 109.62454 * 305.10857 * 4 2 1 30 30 H 1.08998 * 109.62836 * 65.49043 * 4 2 1 31 31 H 1.09006 * 109.62278 * 68.36726 * 7 5 4 32 32 H 1.08998 * 109.62795 * 188.93399 * 7 5 4 33 33 H 1.09000 * 109.48087 * 294.64439 * 8 7 5 34 34 H 1.09002 * 109.48486 * 174.60554 * 8 7 5 35 35 H 0.97000 * 120.00349 * 359.97438 * 13 11 9 36 36 H 1.08998 * 109.47270 * 59.99768 * 14 13 11 37 37 H 1.08996 * 109.47032 * 299.98997 * 14 13 11 38 38 H 1.09004 * 109.47024 * 180.02562 * 16 15 14 39 39 H 1.08997 * 109.47344 * 299.99871 * 16 15 14 40 40 H 1.09003 * 109.46950 * 60.00264 * 16 15 14 41 41 H 1.08998 * 109.47635 * 300.00206 * 17 15 14 42 42 H 1.09006 * 109.46891 * 60.00289 * 17 15 14 43 43 H 1.09005 * 109.46827 * 179.97438 * 17 15 14 44 44 H 0.96999 * 119.99788 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0410 -0.7230 -1.2506 5 6 3.5476 -0.8283 -1.1633 6 8 4.2475 -0.4677 -2.0789 7 6 4.1547 -1.3965 0.1002 8 6 3.5670 -0.6491 1.3018 9 6 2.0401 -0.7218 1.2484 10 1 1.7291 -1.7660 1.2157 11 6 1.4641 -0.0659 2.4767 12 8 1.9981 0.9164 2.9466 13 7 0.3554 -0.5709 3.0532 14 6 -0.2049 0.0671 4.2471 15 6 -1.4519 -0.6973 4.6961 16 6 -1.0741 -2.1439 5.0206 17 6 -2.4916 -0.6812 3.5737 18 6 -2.0280 -0.0414 5.9245 19 1 -1.5520 0.8330 6.3433 20 6 -3.1627 -0.5574 6.5137 21 7 -3.7426 -1.6218 6.0034 22 14 -3.8763 0.2551 8.0368 23 1 -5.0867 -0.4866 8.4726 24 1 -2.8670 0.2380 9.1259 25 1 -4.2421 1.6598 7.7231 26 1 -0.3633 0.6016 0.8332 27 1 -0.3633 0.4208 -0.9376 28 1 -0.3634 -1.0223 0.1043 29 1 1.6064 -1.7215 -1.2995 30 1 1.7616 -0.1581 -2.1400 31 1 3.9158 -2.4573 0.1763 32 1 5.2362 -1.2626 0.0790 33 1 3.8826 0.3937 1.2711 34 1 3.9208 -1.1091 2.2246 35 1 -0.0719 -1.3564 2.6773 36 1 -0.4745 1.0976 4.0157 37 1 0.5359 0.0560 5.0465 38 1 -1.9627 -2.6886 5.3400 39 1 -0.6573 -2.6186 4.1324 40 1 -0.3334 -2.1553 5.8202 41 1 -2.7608 0.3494 3.3425 42 1 -2.0747 -1.1558 2.6854 43 1 -3.3799 -1.2261 3.8935 44 1 -4.5406 -1.9851 6.4182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527972318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:06 Heat of formation + Delta-G solvation = -106.911147 kcal Electronic energy + Delta-G solvation = -23039.332911 eV Core-core repulsion = 19762.455597 eV Total energy + Delta-G solvation = -3276.877314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59495 -39.20682 -36.89095 -36.07368 -33.37771 -32.69880 -30.97806 -29.51707 -27.19933 -25.76735 -25.67109 -24.94710 -22.82364 -21.54130 -19.99844 -19.43070 -18.76250 -17.17178 -15.99036 -15.84081 -15.72997 -15.25159 -15.14960 -14.74567 -14.67890 -14.14129 -13.81347 -13.18130 -13.03278 -12.89219 -12.62744 -12.46715 -12.36266 -12.26215 -12.18785 -11.55698 -11.42908 -11.22643 -11.20454 -10.99615 -10.87650 -10.77190 -10.74695 -10.42079 -10.23325 -9.67367 -9.61548 -9.55060 -9.21971 -8.82791 -8.48176 -8.34146 -6.05168 -4.15338 1.72170 2.96864 3.27906 3.32412 3.35729 3.63647 3.87617 4.37220 4.38391 4.42260 4.63656 4.77409 4.96393 5.06233 5.09459 5.21682 5.23698 5.32919 5.38369 5.47592 5.57961 5.68391 5.78438 5.92005 5.97717 6.06743 6.17532 6.20974 6.29171 6.46944 6.74313 6.77745 6.89148 6.97647 6.99368 7.25684 7.31442 7.51716 7.66166 7.97311 8.01630 8.12021 8.35217 8.66374 8.85227 9.50703 10.96113 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038140 B = 0.003623 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.962113 B = 7726.919213 C = 7929.833367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.072 4.072 3 H 0.083 0.917 4 C -0.163 4.163 5 C 0.363 3.637 6 O -0.462 6.462 7 C -0.169 4.169 8 C -0.097 4.097 9 C -0.109 4.109 10 H 0.093 0.907 11 C 0.512 3.488 12 O -0.551 6.551 13 N -0.714 5.714 14 C 0.131 3.869 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.507 4.507 19 H 0.056 0.944 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.288 1.288 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.397 0.603 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.644 -3.029 -11.923 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.091 4.091 3 H 0.101 0.899 4 C -0.201 4.201 5 C 0.239 3.761 6 O -0.335 6.335 7 C -0.207 4.207 8 C -0.135 4.135 9 C -0.130 4.130 10 H 0.111 0.889 11 C 0.297 3.703 12 O -0.430 6.430 13 N -0.364 5.364 14 C 0.008 3.992 15 C 0.056 3.944 16 C -0.188 4.188 17 C -0.187 4.187 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.134 4.134 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.213 1.213 24 H -0.203 1.203 25 H -0.203 1.203 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.233 0.767 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.207 -2.251 -12.004 15.295 hybrid contribution -0.752 -0.054 0.799 1.099 sum 8.455 -2.305 -11.205 14.225 Atomic orbital electron populations 1.21951 0.93469 1.02870 1.02908 1.21004 0.96908 0.99869 0.91286 0.89899 1.22404 0.94146 1.03545 1.00018 1.24939 0.91641 0.72661 0.86882 1.90406 1.65451 1.37878 1.39794 1.22339 1.02119 1.01902 0.94308 1.21350 0.92760 1.02094 0.97269 1.21455 0.96632 1.01092 0.93868 0.88913 1.20310 0.80865 0.84487 0.84662 1.90673 1.60844 1.26672 1.64805 1.46409 1.27393 1.32173 1.30437 1.21717 0.96439 0.96543 0.84473 1.18346 0.89209 0.92441 0.94434 1.21827 1.01399 0.98699 0.96873 1.21823 1.02348 0.99392 0.95174 1.20951 1.10447 1.12774 1.10417 0.92535 1.24868 0.96540 0.94866 0.97166 1.69789 1.20433 1.22056 1.40164 0.86639 0.78439 0.79519 0.83297 1.21328 1.20288 1.20279 0.91334 0.92028 0.91934 0.88001 0.88985 0.88171 0.89058 0.90161 0.90160 0.76716 0.92779 0.92771 0.89627 0.97541 0.95475 0.95487 0.97490 0.89642 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.63 37.16 0.32 -1.23 16 2 C -0.07 -0.71 2.29 -90.52 -0.21 -0.92 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.16 -1.36 5.45 -27.48 -0.15 -1.51 16 5 C 0.36 3.67 6.72 -28.48 -0.19 3.48 16 6 O -0.46 -6.30 17.89 6.00 0.11 -6.19 16 7 C -0.17 -1.40 6.17 -27.49 -0.17 -1.57 16 8 C -0.10 -0.98 4.83 -26.64 -0.13 -1.11 16 9 C -0.11 -1.17 1.99 -91.82 -0.18 -1.36 16 10 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 11 C 0.51 7.92 5.63 -10.99 -0.06 7.85 16 12 O -0.55 -10.75 16.37 5.56 0.09 -10.66 16 13 N -0.71 -11.52 4.50 -60.29 -0.27 -11.79 16 14 C 0.13 2.64 4.50 -4.04 -0.02 2.62 16 15 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 16 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 17 C -0.13 -2.77 8.08 37.16 0.30 -2.47 16 18 C -0.51 -12.96 8.01 -34.44 -0.28 -13.23 16 19 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.89 -23.04 9.35 55.43 0.52 -22.52 16 22 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.07 0.86 7.11 -51.93 -0.37 0.49 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.94 7.98 -51.93 -0.41 0.53 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.40 5.73 6.13 -40.82 -0.25 5.48 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 43 H 0.08 2.05 6.07 -51.93 -0.32 1.74 16 44 H 0.26 6.58 8.31 -40.82 -0.34 6.25 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -29.17 343.94 -7.44 -36.61 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.41 Total: 3.18 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.64 Total: -9.16 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.25 Total: -34.32 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.20 Total: -16.85 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.17 -7.44 -36.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527972318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.300 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds