Wall clock time and date at job start Tue Mar 31 2020 05:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47200 * 2 1 4 4 N 1.46497 * 109.46913 * 119.99379 * 2 1 3 5 5 C 1.46508 * 119.99916 * 115.55000 * 4 2 1 6 6 C 1.50694 * 109.46908 * 276.40680 * 5 4 2 7 7 H 1.07995 * 120.00389 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99972 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99611 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00278 * 179.72445 * 8 6 5 11 11 H 1.48503 * 109.46763 * 90.00109 * 10 8 6 12 12 H 1.48496 * 109.47277 * 210.00080 * 10 8 6 13 13 H 1.48506 * 109.47111 * 330.00487 * 10 8 6 14 14 C 1.34779 * 120.00601 * 295.55281 * 4 2 1 15 15 O 1.21284 * 119.99702 * 5.27755 * 14 4 2 16 16 C 1.50697 * 120.00429 * 185.28687 * 14 4 2 17 17 H 1.09004 * 109.40816 * 305.56869 * 16 14 4 18 18 C 1.52954 * 109.41619 * 65.42976 * 16 14 4 19 19 C 1.53239 * 109.40026 * 183.77725 * 18 16 14 20 20 C 1.51267 * 108.48209 * 305.26521 * 19 18 16 21 21 O 1.20766 * 120.85025 * 231.40574 * 20 19 18 22 22 C 1.51274 * 118.30277 * 51.38949 * 20 19 18 23 23 C 1.52956 * 109.41318 * 185.71539 * 16 14 4 24 24 H 1.08999 * 109.48755 * 56.31155 * 23 16 14 25 25 C 1.52997 * 109.48345 * 296.28333 * 23 16 14 26 26 H 1.08999 * 109.46928 * 307.82324 * 1 2 3 27 27 H 1.09003 * 109.46721 * 67.81944 * 1 2 3 28 28 H 1.08990 * 109.46924 * 187.81742 * 1 2 3 29 29 H 1.08993 * 109.47823 * 239.99721 * 2 1 3 30 30 H 1.08997 * 109.46969 * 183.15952 * 3 2 1 31 31 H 1.09004 * 109.46982 * 303.15505 * 3 2 1 32 32 H 1.09004 * 109.47068 * 63.15278 * 3 2 1 33 33 H 1.09002 * 109.47080 * 156.40905 * 5 4 2 34 34 H 1.09001 * 109.46544 * 36.40662 * 5 4 2 35 35 H 0.97000 * 119.99949 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.48068 * 303.68231 * 18 16 14 37 37 H 1.08995 * 109.48142 * 63.72591 * 18 16 14 38 38 H 1.08994 * 109.62285 * 185.58948 * 19 18 16 39 39 H 1.09002 * 109.68949 * 64.98348 * 19 18 16 40 40 H 1.08997 * 109.62865 * 188.93849 * 22 20 19 41 41 H 1.09007 * 109.78174 * 68.45885 * 22 20 19 42 42 H 1.09008 * 109.47026 * 59.99838 * 25 23 16 43 43 H 1.08999 * 109.47449 * 180.02562 * 25 23 16 44 44 H 1.09003 * 109.47449 * 300.00514 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.7784 -1.9360 1.0642 6 6 1.8244 -3.0941 0.9244 7 1 0.7587 -2.9199 0.9327 8 6 2.3123 -4.3762 0.7849 9 7 3.6102 -4.5882 0.7744 10 14 1.1298 -5.8127 0.6195 11 1 0.8239 -6.0392 -0.8160 12 1 1.7514 -7.0339 1.1918 13 1 -0.1259 -5.5070 1.3509 14 6 1.7683 -0.1801 2.4183 15 8 1.0590 0.7970 2.5339 16 6 2.3701 -0.8231 3.6411 17 1 2.1104 -1.8816 3.6587 18 6 3.8917 -0.6736 3.5975 19 6 4.5099 -1.4087 4.7915 20 6 3.8698 -0.8876 6.0591 21 8 4.5471 -0.5054 6.9830 22 6 2.3595 -0.8573 6.1399 23 6 1.8195 -0.1437 4.8960 24 1 0.7308 -0.1969 4.8903 25 6 2.2586 1.3218 4.9172 26 1 -0.3633 0.6302 0.8118 27 1 -0.3633 0.3880 -0.9517 28 1 -0.3633 -1.0180 0.1398 29 1 1.8935 -0.5138 -0.8899 30 1 3.1286 1.4430 -0.0566 31 1 1.6313 1.9724 -0.8604 32 1 1.7236 1.9398 0.9169 33 1 3.3971 -2.0797 1.9500 34 1 3.4151 -1.8810 0.1811 35 1 3.9535 -5.4902 0.6766 36 1 4.2727 -1.1027 2.6708 37 1 4.1546 0.3832 3.6441 38 1 5.5834 -1.2224 4.8202 39 1 4.3236 -2.4788 4.7004 40 1 2.0515 -0.3166 7.0348 41 1 1.9714 -1.8753 6.1754 42 1 1.8752 1.8288 4.0317 43 1 1.8665 1.8057 5.8117 44 1 3.3473 1.3749 4.9234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583888989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:16 Heat of formation + Delta-G solvation = -89.515613 kcal Electronic energy + Delta-G solvation = -24088.652023 eV Core-core repulsion = 20812.529037 eV Total energy + Delta-G solvation = -3276.122987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51951 -39.06776 -36.57566 -35.30661 -33.19213 -32.14332 -31.23917 -28.89750 -27.26671 -26.76069 -26.55195 -23.32427 -22.56753 -22.12437 -20.73101 -18.56077 -17.74879 -16.76623 -16.12513 -15.96893 -15.34523 -15.15379 -14.75580 -14.50315 -14.30022 -13.96270 -13.54446 -13.39836 -12.97884 -12.83834 -12.61797 -12.25516 -12.18105 -11.83426 -11.75283 -11.56736 -11.35476 -11.32433 -11.19651 -11.02230 -10.86496 -10.79223 -10.64296 -10.48616 -10.36183 -10.18163 -10.06984 -9.65294 -9.16173 -8.70461 -8.51656 -7.70517 -6.23374 -4.29988 2.11290 3.18404 3.26337 3.27920 3.37108 3.86671 4.27607 4.30097 4.79774 4.92682 5.04205 5.11134 5.18097 5.36139 5.41609 5.48493 5.56846 5.67161 5.72191 5.77875 5.84440 5.90850 5.94600 6.08129 6.09470 6.11408 6.16875 6.20164 6.32457 6.35071 6.42774 6.46071 6.54951 6.70104 6.75564 6.82590 6.87199 7.16388 7.57421 7.63738 7.72425 8.01541 8.37133 8.75633 9.02050 9.37968 10.82908 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.007443 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.981677 B = 3760.890401 C = 5107.287502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 C -0.168 4.168 4 N -0.589 5.589 5 C 0.223 3.777 6 C -0.536 4.536 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.525 3.475 15 O -0.564 6.564 16 C -0.106 4.106 17 H 0.110 0.890 18 C -0.114 4.114 19 C -0.167 4.167 20 C 0.368 3.632 21 O -0.471 6.471 22 C -0.167 4.167 23 C -0.061 4.061 24 H 0.085 0.915 25 C -0.160 4.160 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 6.600 3.676 7.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.226 4.226 4 N -0.319 5.319 5 C 0.104 3.896 6 C -0.575 4.575 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.529 5.529 10 Si 0.721 3.279 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.314 3.686 15 O -0.445 6.445 16 C -0.127 4.127 17 H 0.128 0.872 18 C -0.152 4.152 19 C -0.204 4.204 20 C 0.244 3.756 21 O -0.345 6.345 22 C -0.205 4.205 23 C -0.080 4.080 24 H 0.103 0.897 25 C -0.217 4.217 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.876 7.141 4.175 8.318 hybrid contribution -0.596 -1.279 -0.353 1.455 sum -1.472 5.862 3.822 7.151 Atomic orbital electron populations 1.22144 0.95792 1.02575 1.01387 1.20793 0.94163 0.92184 0.88331 1.22219 1.00378 0.96994 1.03023 1.48310 1.53873 1.25433 1.04332 1.19775 0.91595 0.79266 0.98977 1.21505 0.93602 0.91246 1.51100 0.92083 1.24921 0.95163 0.98812 0.94869 1.69906 1.11551 1.21979 1.49495 0.86562 0.81101 0.81754 0.78468 1.20563 1.21080 1.19803 1.20203 0.80465 0.83423 0.84532 1.90471 1.39555 1.28145 1.86369 1.21326 0.95825 1.02571 0.93006 0.87215 1.21779 0.93480 1.00933 0.98969 1.22295 1.01308 1.02865 0.93966 1.24963 0.91769 0.71779 0.87056 1.90367 1.67236 1.37183 1.39750 1.22423 0.94372 1.03370 1.00353 1.20814 1.00931 0.95091 0.91114 0.89662 1.22153 1.00367 0.95764 1.03394 0.91280 0.93285 0.92304 0.90052 0.93367 0.92762 0.90355 0.92630 0.95087 0.92531 0.88298 0.91303 0.89417 0.87587 0.89538 0.88250 0.89182 0.93446 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.07 37.16 0.34 -2.41 16 2 C 0.15 2.63 3.27 -67.93 -0.22 2.41 16 3 C -0.17 -2.62 9.10 37.16 0.34 -2.28 16 4 N -0.59 -11.31 2.41 -167.47 -0.40 -11.71 16 5 C 0.22 4.85 4.48 -5.19 -0.02 4.83 16 6 C -0.54 -13.09 9.37 -34.44 -0.32 -13.41 16 7 H 0.06 1.54 7.61 -52.49 -0.40 1.14 16 8 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -23.19 13.29 55.43 0.74 -22.46 16 10 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 C 0.53 9.63 6.17 -10.99 -0.07 9.56 16 15 O -0.56 -10.80 10.01 5.55 0.06 -10.75 16 16 C -0.11 -1.70 1.37 -91.82 -0.13 -1.82 16 17 H 0.11 1.89 7.70 -51.93 -0.40 1.49 16 18 C -0.11 -1.70 4.51 -26.63 -0.12 -1.82 16 19 C -0.17 -2.28 6.17 -27.48 -0.17 -2.45 16 20 C 0.37 5.31 5.75 -28.48 -0.16 5.15 16 21 O -0.47 -8.08 17.89 5.99 0.11 -7.98 16 22 C -0.17 -2.14 5.65 -27.48 -0.16 -2.30 16 23 C -0.06 -0.86 2.34 -90.52 -0.21 -1.07 16 24 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 25 C -0.16 -2.29 8.31 37.16 0.31 -1.98 16 26 H 0.07 1.24 6.55 -51.93 -0.34 0.90 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 29 H 0.08 1.45 7.85 -51.93 -0.41 1.05 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.33 5.94 -51.93 -0.31 1.02 16 33 H 0.06 1.19 4.01 -51.93 -0.21 0.98 16 34 H 0.03 0.73 8.02 -51.93 -0.42 0.31 16 35 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 36 H 0.10 1.60 5.32 -51.93 -0.28 1.33 16 37 H 0.07 0.99 6.19 -51.93 -0.32 0.67 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.44 5.63 -51.92 -0.29 1.15 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.04 0.65 5.60 -51.93 -0.29 0.36 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -26.97 335.36 -7.18 -34.14 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.01 Total: 4.98 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.70 Total: -6.06 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.33 Total: -34.17 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.16 Total: -18.73 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.97 -7.18 -34.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583888989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.373 kcal (2) G-P(sol) polarization free energy of solvation -26.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds