Wall clock time and date at job start Tue Mar 31 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47037 * 2 1 4 4 C 1.52995 * 109.46956 * 239.99718 * 2 1 3 5 5 C 1.50693 * 109.47290 * 65.00262 * 4 2 1 6 6 H 1.07998 * 120.00329 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00301 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99495 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00364 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46804 * 60.00066 * 9 7 5 11 11 H 1.48492 * 109.47112 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46970 * 300.00444 * 9 7 5 13 13 C 1.53007 * 109.46961 * 119.99499 * 2 1 3 14 14 N 1.46892 * 109.46984 * 183.96869 * 13 2 1 15 15 C 1.48526 * 111.00156 * 58.31257 * 14 13 2 16 16 C 1.54943 * 103.23066 * 159.71846 * 15 14 13 17 17 H 1.09008 * 110.87500 * 81.01302 * 16 15 14 18 18 C 1.50697 * 110.72701 * 204.22658 * 16 15 14 19 19 O 1.20824 * 119.99894 * 113.49738 * 18 16 15 20 20 O 1.34225 * 120.00268 * 293.50332 * 18 16 15 21 21 C 1.54592 * 102.91898 * 322.59037 * 16 15 14 22 22 H 1.09000 * 110.39092 * 262.99695 * 21 16 15 23 23 C 1.52995 * 110.31246 * 140.87239 * 21 16 15 24 24 C 1.52996 * 117.50343 * 131.57351 * 23 21 16 25 25 C 1.53007 * 117.49830 * 62.90955 * 23 21 16 26 26 C 1.47897 * 110.99914 * 175.71188 * 14 13 2 27 27 H 1.08995 * 109.47033 * 64.76398 * 1 2 3 28 28 H 1.09001 * 109.47424 * 184.76613 * 1 2 3 29 29 H 1.09004 * 109.47157 * 304.76276 * 1 2 3 30 30 H 1.09005 * 109.46753 * 185.00502 * 4 2 1 31 31 H 1.08999 * 109.47187 * 304.99514 * 4 2 1 32 32 H 0.97006 * 119.99457 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47168 * 303.97434 * 13 2 1 34 34 H 1.09001 * 109.46544 * 63.96934 * 13 2 1 35 35 H 1.09008 * 110.67079 * 278.15417 * 15 14 13 36 36 H 1.09001 * 110.66861 * 41.28389 * 15 14 13 37 37 H 0.96696 * 117.00107 * 179.97438 * 20 18 16 38 38 H 1.09000 * 115.55125 * 277.24675 * 23 21 16 39 39 H 1.09001 * 117.49877 * 359.97438 * 24 23 21 40 40 H 1.08994 * 117.50276 * 145.02592 * 24 23 21 41 41 H 1.09006 * 117.49852 * 214.98075 * 25 23 21 42 42 H 1.08996 * 117.50065 * 359.97438 * 25 23 21 43 43 H 1.08998 * 109.91645 * 333.50217 * 26 14 13 44 44 H 1.09000 * 109.92187 * 94.80180 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0801 0.9740 -2.3758 7 6 1.9933 -0.4019 -3.7282 8 7 2.6773 -1.5185 -3.8509 9 14 1.4985 0.5624 -5.2497 10 1 2.0897 1.9233 -5.1871 11 1 1.9936 -0.1376 -6.4621 12 1 0.0184 0.6680 -5.3092 13 6 2.0400 -0.7212 1.2494 14 7 3.5058 -0.6387 1.2983 15 6 3.9594 0.7755 1.3057 16 6 5.3965 0.6840 1.8778 17 1 6.1051 0.3915 1.1028 18 6 5.8051 1.9918 2.5052 19 8 5.9859 2.0592 3.6979 20 8 5.9682 3.0818 1.7390 21 6 5.2717 -0.4222 2.9505 22 1 5.1297 0.0196 3.9368 23 6 6.5159 -1.3125 2.9425 24 6 7.1830 -1.6064 4.2876 25 6 7.8547 -0.6587 3.2906 26 6 4.0290 -1.2366 2.5457 27 1 -0.3633 0.4381 -0.9295 28 1 -0.3634 -1.0241 0.0854 29 1 -0.3634 0.5860 0.8443 30 1 3.1263 -0.7996 -1.2054 31 1 1.6054 -1.7199 -1.2950 32 1 2.9245 -1.8414 -4.7316 33 1 1.6197 -0.2500 2.1379 34 1 1.7359 -1.7673 1.2145 35 1 3.9733 1.1806 0.2938 36 1 3.3250 1.3796 1.9543 37 1 6.2305 3.8978 2.1867 38 1 6.5223 -2.1047 2.1939 39 1 6.7358 -1.1650 5.1783 40 1 7.6287 -2.5917 4.4238 41 1 8.7419 -1.0212 2.7712 42 1 7.8492 0.4058 3.5248 43 1 3.2748 -1.1778 3.3304 44 1 4.3069 -2.2761 2.3713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603142578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:05 Heat of formation + Delta-G solvation = -78.630690 kcal Electronic energy + Delta-G solvation = -22942.506000 eV Core-core repulsion = 19666.855019 eV Total energy + Delta-G solvation = -3275.650981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79405 -38.91498 -37.09212 -36.13224 -34.89813 -32.36755 -30.91112 -29.18645 -26.98126 -25.45095 -23.98759 -22.80560 -22.46644 -21.50510 -21.00552 -19.63964 -18.70247 -18.10760 -17.00492 -16.24640 -16.22561 -15.41926 -15.11175 -14.58399 -14.53076 -14.09087 -13.83374 -13.25298 -13.03931 -12.82247 -12.40433 -12.22632 -11.93456 -11.80111 -11.68469 -11.49332 -11.45171 -11.29050 -11.14711 -10.84408 -10.81366 -10.75124 -10.54352 -10.38129 -10.23734 -10.10492 -9.92597 -9.63487 -9.08233 -8.84988 -8.24467 -8.00478 -5.88335 -3.89138 2.10786 2.92765 3.38159 3.42998 3.45003 3.69046 4.32322 4.44241 4.54048 4.58678 4.60155 4.93731 5.03843 5.18280 5.34555 5.38512 5.45013 5.46806 5.49415 5.58174 5.65208 5.68916 5.82947 5.85171 5.98973 6.05704 6.07282 6.14940 6.18828 6.25319 6.25764 6.39135 6.42946 6.48188 6.94699 7.02521 7.18355 7.27598 7.44735 7.81552 7.85309 8.05255 8.19456 8.56512 9.18467 9.73162 11.22597 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.004283 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.190174 B = 6535.820525 C = 6720.508776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.056 0.944 4 C 0.035 3.965 5 C -0.516 4.516 6 H 0.051 0.949 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.055 3.945 14 N -0.498 5.498 15 C 0.054 3.946 16 C -0.084 4.084 17 H 0.125 0.875 18 C 0.492 3.508 19 O -0.520 6.520 20 O -0.509 6.509 21 C -0.056 4.056 22 H 0.092 0.908 23 C -0.141 4.141 24 C -0.176 4.176 25 C -0.183 4.183 26 C 0.041 3.959 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.033 0.967 31 H 0.011 0.989 32 H 0.258 0.742 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.043 0.957 37 H 0.407 0.593 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 3.425 15.192 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.074 0.926 4 C -0.002 4.002 5 C -0.554 4.554 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.205 1.205 13 C -0.072 4.072 14 N -0.221 5.221 15 C -0.074 4.074 16 C -0.103 4.103 17 H 0.143 0.857 18 C 0.334 3.666 19 O -0.408 6.408 20 O -0.320 6.320 21 C -0.074 4.074 22 H 0.110 0.890 23 C -0.159 4.159 24 C -0.213 4.213 25 C -0.220 4.220 26 C -0.087 4.087 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.265 0.735 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.183 2.665 14.723 16.598 hybrid contribution -0.369 1.468 0.082 1.516 sum 6.814 4.133 14.805 16.814 Atomic orbital electron populations 1.21719 0.96318 1.00464 1.00683 1.21296 0.94616 0.99152 0.95611 0.92585 1.19048 0.97380 0.94625 0.89120 1.21271 1.34517 1.08220 0.91397 0.93050 1.24977 0.95443 0.95048 0.98824 1.69970 1.38995 1.21161 1.23215 0.86786 0.78778 0.80218 0.82928 1.20399 1.21446 1.20468 1.22477 0.85751 1.01367 0.97644 1.64814 1.11433 1.12429 1.33470 1.23150 0.90711 0.91341 1.02236 1.22036 1.00600 0.88202 0.99492 0.85700 1.23376 0.72336 0.85794 0.85079 1.90675 1.47837 1.85501 1.16836 1.84613 1.81027 1.21167 1.45194 1.21611 0.93978 0.93275 0.98572 0.88993 1.22359 0.92377 1.01765 0.99409 1.22980 1.04325 1.00450 0.93502 1.22975 0.96048 0.99098 1.03898 1.22986 0.94660 0.99809 0.91267 0.91492 0.93685 0.95350 0.94880 0.97105 0.93197 0.96162 0.90810 0.87635 0.93911 0.73496 0.86891 0.88907 0.88920 0.88903 0.88872 0.93799 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.08 37.16 0.34 -2.14 16 2 C -0.09 -1.75 2.14 -90.62 -0.19 -1.94 16 3 H 0.06 1.12 6.69 -51.93 -0.35 0.78 16 4 C 0.04 0.89 4.39 -27.89 -0.12 0.77 16 5 C -0.52 -14.27 8.34 -34.44 -0.29 -14.56 16 6 H 0.05 1.39 7.08 -52.49 -0.37 1.01 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.88 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.06 0.94 4.24 -3.82 -0.02 0.92 16 14 N -0.50 -8.07 4.68 -230.45 -1.08 -9.14 16 15 C 0.05 0.81 4.77 -1.90 -0.01 0.80 16 16 C -0.08 -1.10 2.88 -89.91 -0.26 -1.35 16 17 H 0.13 1.64 7.86 -51.92 -0.41 1.24 16 18 C 0.49 6.23 7.28 36.00 0.26 6.49 16 19 O -0.52 -7.44 15.36 -18.75 -0.29 -7.73 16 20 O -0.51 -5.48 13.42 -39.25 -0.53 -6.01 16 21 C -0.06 -0.68 2.56 -89.26 -0.23 -0.91 16 22 H 0.09 1.20 6.67 -51.93 -0.35 0.85 16 23 C -0.14 -1.57 4.87 -90.62 -0.44 -2.02 16 24 C -0.18 -1.76 10.19 -26.69 -0.27 -2.03 16 25 C -0.18 -1.95 10.00 -26.69 -0.27 -2.22 16 26 C 0.04 0.54 6.36 -2.75 -0.02 0.53 16 27 H 0.07 1.35 6.83 -51.93 -0.35 0.99 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.90 7.58 -51.93 -0.39 0.50 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.02 0.31 7.97 -51.93 -0.41 -0.10 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.11 1.78 7.57 -51.92 -0.39 1.39 16 36 H 0.04 0.63 7.92 -51.93 -0.41 0.21 16 37 H 0.41 2.48 9.10 45.56 0.41 2.90 16 38 H 0.11 1.28 7.93 -51.93 -0.41 0.87 16 39 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.10 6.90 -51.93 -0.36 0.74 16 43 H 0.04 0.55 7.67 -51.93 -0.40 0.16 16 44 H 0.09 1.11 7.55 -51.93 -0.39 0.72 16 LS Contribution 350.70 15.07 5.28 5.28 Total: -1.00 -31.46 350.70 -9.18 -40.64 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.68 Total: 2.54 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.61 Total: -16.12 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.34 Total: -35.25 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.81 Total: -13.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.46 -9.18 -40.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603142578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.989 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds