Wall clock time and date at job start Tue Mar 31 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47356 * 2 1 4 4 C 1.53005 * 109.47097 * 119.99134 * 2 1 3 5 5 C 1.50700 * 109.47408 * 295.00666 * 4 2 1 6 6 H 1.07998 * 119.99789 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00139 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99653 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47407 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.46942 * 300.00110 * 9 7 5 12 12 H 1.48506 * 109.46974 * 60.00030 * 9 7 5 13 13 C 1.53000 * 109.47657 * 239.99645 * 2 1 3 14 14 N 1.46898 * 109.46960 * 61.52955 * 13 2 1 15 15 C 1.46813 * 110.99528 * 51.66961 * 14 13 2 16 16 C 1.53270 * 109.43890 * 189.19247 * 15 14 13 17 17 C 1.53207 * 108.62167 * 304.39562 * 16 15 14 18 18 C 1.52730 * 117.84805 * 197.00989 * 17 16 15 19 19 C 1.52766 * 117.80113 * 266.02239 * 17 16 15 20 20 H 1.09004 * 117.50268 * 359.67332 * 19 17 16 21 21 C 1.50694 * 117.50587 * 144.70448 * 19 17 16 22 22 O 1.20823 * 120.00051 * 95.10026 * 21 19 17 23 23 O 1.34234 * 120.00151 * 275.09625 * 21 19 17 24 24 C 1.53218 * 114.73237 * 51.42798 * 17 16 15 25 25 C 1.46809 * 110.99640 * 176.35517 * 14 13 2 26 26 H 1.09001 * 109.47282 * 300.00527 * 1 2 3 27 27 H 1.08998 * 109.46631 * 60.00736 * 1 2 3 28 28 H 1.08997 * 109.46681 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47396 * 175.00115 * 4 2 1 30 30 H 1.09004 * 109.46651 * 55.00576 * 4 2 1 31 31 H 0.96999 * 120.00438 * 359.97438 * 8 7 5 32 32 H 1.08998 * 109.47037 * 181.53691 * 13 2 1 33 33 H 1.09005 * 109.46806 * 301.53147 * 13 2 1 34 34 H 1.08999 * 109.47716 * 309.18617 * 15 14 13 35 35 H 1.08995 * 109.47705 * 69.20645 * 15 14 13 36 36 H 1.09006 * 109.60780 * 184.65863 * 16 15 14 37 37 H 1.08998 * 109.75239 * 64.22371 * 16 15 14 38 38 H 1.08999 * 117.50663 * 215.22621 * 18 17 16 39 39 H 1.09000 * 117.50584 * 0.27803 * 18 17 16 40 40 H 0.96697 * 116.99951 * 179.97438 * 23 21 19 41 41 H 1.08998 * 109.61434 * 188.83279 * 24 17 16 42 42 H 1.09002 * 109.60908 * 68.31201 * 24 17 16 43 43 H 1.08991 * 109.47948 * 290.80160 * 25 14 13 44 44 H 1.08997 * 109.47281 * 50.82264 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6412 0.0573 2.4767 6 1 1.0805 0.9747 2.3756 7 6 1.9922 -0.4019 3.7284 8 7 2.6755 -1.5189 3.8514 9 14 1.4986 0.5632 5.2497 10 1 1.9924 -0.1373 6.4623 11 1 2.0916 1.9232 5.1871 12 1 0.0186 0.6708 5.3090 13 6 2.0402 -0.7213 -1.2492 14 7 1.5810 -0.0079 -2.4483 15 6 1.9131 1.4201 -2.3703 16 6 1.2241 2.1674 -3.5175 17 6 1.6351 1.5164 -4.8421 18 6 1.4056 2.3083 -6.1277 19 6 2.8255 2.1137 -5.5905 20 1 3.3182 2.9777 -5.1445 21 6 3.7273 1.1635 -6.3352 22 8 3.5515 0.9621 -7.5135 23 8 4.7260 0.5409 -5.6896 24 6 1.4480 -0.0034 -4.8947 25 6 2.1236 -0.6225 -3.6662 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 3.1264 -0.7993 1.2058 30 1 1.6054 -1.7197 1.2953 31 1 2.9322 -2.0199 3.0615 32 1 3.1298 -0.7452 -1.2354 33 1 1.6546 -1.7408 -1.2629 34 1 1.5696 1.8215 -1.4169 35 1 2.9926 1.5470 -2.4505 36 1 1.5342 3.2124 -3.5117 37 1 0.1422 2.1061 -3.3999 38 1 1.1240 1.7490 -7.0199 39 1 0.9641 3.3006 -6.0357 40 1 5.2776 -0.0596 -6.2093 41 1 1.9064 -0.3974 -5.8017 42 1 0.3843 -0.2415 -4.8861 43 1 3.1980 -0.4458 -3.7147 44 1 1.9320 -1.6953 -3.6481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604131070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:57 Heat of formation + Delta-G solvation = -85.523396 kcal Electronic energy + Delta-G solvation = -22789.553281 eV Core-core repulsion = 19513.603410 eV Total energy + Delta-G solvation = -3275.949871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00995 -39.26757 -37.22620 -36.28482 -34.58994 -32.29077 -31.06951 -29.74573 -26.44054 -25.96404 -24.98109 -23.48337 -22.85056 -21.51542 -21.11838 -19.21984 -18.78503 -18.18515 -16.98007 -16.82762 -16.20628 -15.30018 -14.98322 -14.76808 -14.33724 -14.08591 -13.86903 -13.68690 -13.29267 -13.11395 -12.86129 -12.47488 -12.16802 -11.93201 -11.84459 -11.68678 -11.54336 -11.34770 -11.24796 -11.04606 -10.95361 -10.68141 -10.59608 -10.31864 -10.20035 -10.08559 -9.94342 -9.62306 -9.40615 -8.45330 -8.28430 -8.02656 -6.31207 -3.99323 1.85556 2.66884 3.33483 3.45554 3.47523 3.66057 4.07935 4.30934 4.32009 4.48725 4.58196 4.66863 5.03000 5.11643 5.18175 5.35357 5.39750 5.44819 5.45926 5.50488 5.59293 5.65073 5.71239 5.75896 5.79813 5.95225 5.98685 6.03351 6.12113 6.18631 6.20437 6.35550 6.45262 6.58155 6.90189 7.05747 7.12590 7.35598 7.36095 7.44270 7.61006 7.62527 8.27972 8.51409 8.93790 9.72194 11.09240 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032435 B = 0.003358 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.070664 B = 8336.615275 C = 8563.728612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.059 0.941 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.049 3.951 16 C -0.078 4.078 17 C -0.085 4.085 18 C -0.139 4.139 19 C -0.168 4.168 20 H 0.138 0.862 21 C 0.515 3.485 22 O -0.518 6.518 23 O -0.509 6.509 24 C -0.082 4.082 25 C 0.056 3.944 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.003 0.997 30 H 0.007 0.993 31 H 0.268 0.732 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.409 0.591 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.037 0.963 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 6.376 -20.098 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.066 4.066 14 N -0.258 5.258 15 C -0.078 4.078 16 C -0.116 4.116 17 C -0.086 4.086 18 C -0.176 4.176 19 C -0.187 4.187 20 H 0.156 0.844 21 C 0.358 3.642 22 O -0.407 6.407 23 O -0.320 6.320 24 C -0.119 4.119 25 C -0.072 4.072 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.021 0.979 30 H 0.025 0.975 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.268 0.732 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.055 0.945 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.304 6.548 -18.551 19.715 hybrid contribution 1.403 -0.343 -2.091 2.541 sum 0.099 6.205 -20.642 21.555 Atomic orbital electron populations 1.21580 0.95415 1.00723 1.00216 1.21192 0.96212 0.98975 0.93420 0.92237 1.19246 0.95109 0.95632 0.92333 1.22021 1.38647 1.10224 0.92268 0.93245 1.25815 0.94743 0.97156 1.01364 1.70779 1.36102 1.14883 1.33496 0.83574 0.76058 0.75132 0.75702 1.20877 1.21540 1.21478 1.22287 0.96960 0.97992 0.89352 1.61799 1.59859 1.02228 1.01904 1.22213 0.97685 0.88728 0.99213 1.21296 1.01720 0.97732 0.90805 1.21723 0.97036 0.95794 0.94005 1.23184 0.93683 1.02667 0.98074 1.21934 0.89837 1.00764 1.06145 0.84421 1.22362 0.78510 0.78190 0.85173 1.90713 1.70610 1.62114 1.17227 1.84577 1.42811 1.57373 1.47222 1.21283 1.02400 0.90958 0.97306 1.22042 0.96784 0.98632 0.89739 0.92704 0.93757 0.94146 0.97925 0.97497 0.92180 0.95580 0.91258 0.89029 0.95020 0.91231 0.89863 0.87611 0.87144 0.73214 0.92233 0.89797 0.94453 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.78 37.16 0.33 -2.01 16 2 C -0.08 -1.59 1.85 -90.62 -0.17 -1.76 16 3 H 0.06 1.21 6.03 -51.93 -0.31 0.90 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -16.68 8.41 -34.44 -0.29 -16.97 16 6 H 0.05 1.36 7.06 -52.49 -0.37 0.99 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.23 13.65 55.43 0.76 -27.47 16 9 Si 1.07 25.35 29.90 -169.99 -5.08 20.27 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 1.05 4.53 -3.83 -0.02 1.03 16 14 N -0.53 -7.63 4.00 -234.44 -0.94 -8.57 16 15 C 0.05 0.65 5.00 -3.73 -0.02 0.64 16 16 C -0.08 -0.80 5.87 -26.48 -0.16 -0.96 16 17 C -0.09 -0.84 2.02 -154.55 -0.31 -1.15 16 18 C -0.14 -1.18 9.51 -26.84 -0.26 -1.44 16 19 C -0.17 -1.60 5.98 -91.87 -0.55 -2.15 16 20 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 21 C 0.51 5.55 6.34 36.00 0.23 5.78 16 22 O -0.52 -6.85 17.35 -18.75 -0.33 -7.17 16 23 O -0.51 -4.68 13.28 -39.27 -0.52 -5.20 16 24 C -0.08 -0.88 5.52 -26.48 -0.15 -1.02 16 25 C 0.06 0.70 5.49 -3.74 -0.02 0.68 16 26 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 27 H 0.04 0.74 7.48 -51.93 -0.39 0.36 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 30 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 31 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.34 5.52 -51.93 -0.29 1.05 16 35 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.11 0.96 7.92 -51.93 -0.41 0.55 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.41 2.03 9.10 45.56 0.41 2.44 16 41 H 0.06 0.63 6.85 -51.93 -0.36 0.28 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.49 7.97 -51.93 -0.41 0.07 16 44 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 LS Contribution 347.41 15.07 5.24 5.24 Total: -1.00 -32.72 347.41 -9.08 -41.81 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.63 Total: -0.10 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -1.58 Total: -18.80 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.18 Total: -36.04 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.85 Total: -12.37 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.72 -9.08 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604131070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.718 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds