Wall clock time and date at job start Tue Mar 31 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47356 * 2 1 4 4 C 1.53005 * 109.47097 * 119.99134 * 2 1 3 5 5 C 1.50700 * 109.47408 * 295.00666 * 4 2 1 6 6 H 1.07998 * 119.99789 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00139 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99653 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47407 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.46942 * 300.00110 * 9 7 5 12 12 H 1.48506 * 109.46974 * 60.00030 * 9 7 5 13 13 C 1.53000 * 109.47657 * 239.99645 * 2 1 3 14 14 N 1.46898 * 109.46960 * 61.52955 * 13 2 1 15 15 C 1.46813 * 110.99528 * 51.66961 * 14 13 2 16 16 C 1.53270 * 109.43890 * 189.19247 * 15 14 13 17 17 C 1.53207 * 108.62167 * 304.39562 * 16 15 14 18 18 C 1.52730 * 117.84805 * 197.00989 * 17 16 15 19 19 C 1.52766 * 117.80113 * 266.02239 * 17 16 15 20 20 H 1.09004 * 117.50268 * 359.67332 * 19 17 16 21 21 C 1.50694 * 117.50587 * 144.70448 * 19 17 16 22 22 O 1.20823 * 120.00051 * 95.10026 * 21 19 17 23 23 O 1.34234 * 120.00151 * 275.09625 * 21 19 17 24 24 C 1.53218 * 114.73237 * 51.42798 * 17 16 15 25 25 C 1.46809 * 110.99640 * 176.35517 * 14 13 2 26 26 H 1.09001 * 109.47282 * 300.00527 * 1 2 3 27 27 H 1.08998 * 109.46631 * 60.00736 * 1 2 3 28 28 H 1.08997 * 109.46681 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47396 * 175.00115 * 4 2 1 30 30 H 1.09004 * 109.46651 * 55.00576 * 4 2 1 31 31 H 0.96999 * 120.00438 * 359.97438 * 8 7 5 32 32 H 1.08998 * 109.47037 * 181.53691 * 13 2 1 33 33 H 1.09005 * 109.46806 * 301.53147 * 13 2 1 34 34 H 1.08999 * 109.47716 * 309.18617 * 15 14 13 35 35 H 1.08995 * 109.47705 * 69.20645 * 15 14 13 36 36 H 1.09006 * 109.60780 * 184.65863 * 16 15 14 37 37 H 1.08998 * 109.75239 * 64.22371 * 16 15 14 38 38 H 1.08999 * 117.50663 * 215.22621 * 18 17 16 39 39 H 1.09000 * 117.50584 * 0.27803 * 18 17 16 40 40 H 0.96697 * 116.99951 * 179.97438 * 23 21 19 41 41 H 1.08998 * 109.61434 * 188.83279 * 24 17 16 42 42 H 1.09002 * 109.60908 * 68.31201 * 24 17 16 43 43 H 1.08991 * 109.47948 * 290.80160 * 25 14 13 44 44 H 1.08997 * 109.47281 * 50.82264 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6412 0.0573 2.4767 6 1 1.0805 0.9747 2.3756 7 6 1.9922 -0.4019 3.7284 8 7 2.6755 -1.5189 3.8514 9 14 1.4986 0.5632 5.2497 10 1 1.9924 -0.1373 6.4623 11 1 2.0916 1.9232 5.1871 12 1 0.0186 0.6708 5.3090 13 6 2.0402 -0.7213 -1.2492 14 7 1.5810 -0.0079 -2.4483 15 6 1.9131 1.4201 -2.3703 16 6 1.2241 2.1674 -3.5175 17 6 1.6351 1.5164 -4.8421 18 6 1.4056 2.3083 -6.1277 19 6 2.8255 2.1137 -5.5905 20 1 3.3182 2.9777 -5.1445 21 6 3.7273 1.1635 -6.3352 22 8 3.5515 0.9621 -7.5135 23 8 4.7260 0.5409 -5.6896 24 6 1.4480 -0.0034 -4.8947 25 6 2.1236 -0.6225 -3.6662 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 3.1264 -0.7993 1.2058 30 1 1.6054 -1.7197 1.2953 31 1 2.9322 -2.0199 3.0615 32 1 3.1298 -0.7452 -1.2354 33 1 1.6546 -1.7408 -1.2629 34 1 1.5696 1.8215 -1.4169 35 1 2.9926 1.5470 -2.4505 36 1 1.5342 3.2124 -3.5117 37 1 0.1422 2.1061 -3.3999 38 1 1.1240 1.7490 -7.0199 39 1 0.9641 3.3006 -6.0357 40 1 5.2776 -0.0596 -6.2093 41 1 1.9064 -0.3974 -5.8017 42 1 0.3843 -0.2415 -4.8861 43 1 3.1980 -0.4458 -3.7147 44 1 1.9320 -1.6953 -3.6481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604131070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:56 Heat of formation + Delta-G solvation = -105.786231 kcal Electronic energy + Delta-G solvation = -22790.431944 eV Core-core repulsion = 19513.603410 eV Total energy + Delta-G solvation = -3276.828534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82450 -40.25582 -38.37175 -37.15918 -36.19571 -34.17482 -32.01622 -30.91228 -28.38146 -27.04676 -26.19328 -24.67082 -24.44238 -22.70293 -21.85684 -20.60801 -19.83305 -19.00579 -18.89277 -17.73661 -17.21299 -16.40961 -16.17515 -16.08194 -15.61133 -15.36985 -15.22841 -14.90066 -14.73560 -14.27323 -13.89040 -13.60065 -13.45632 -13.29869 -13.16925 -12.91046 -12.72578 -12.64605 -12.52072 -12.45176 -12.17130 -11.95767 -11.94012 -11.83074 -11.60915 -11.39292 -11.17567 -10.99697 -10.78384 -10.50647 -10.49103 -9.22163 -8.63701 -6.32785 1.04790 1.53810 1.62465 1.81099 2.00372 2.59035 2.61081 2.95029 3.20488 3.55089 3.56714 3.74397 3.81634 3.98464 4.16319 4.26066 4.35559 4.39255 4.42299 4.46963 4.51960 4.58257 4.78476 4.80885 4.81281 4.84220 4.87362 4.90443 4.97140 5.06211 5.09190 5.11887 5.21371 5.31760 5.34931 5.41173 5.49446 5.51571 5.67633 6.03330 6.13389 6.21777 6.25988 6.63683 6.92186 7.48548 8.76948 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032435 B = 0.003358 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.070664 B = 8336.615275 C = 8563.728612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 H 0.060 0.940 4 C 0.016 3.984 5 C -0.603 4.603 6 H 0.054 0.946 7 C -0.043 4.043 8 N -0.943 5.943 9 Si 1.115 2.885 10 H -0.287 1.287 11 H -0.268 1.268 12 H -0.268 1.268 13 C 0.073 3.927 14 N -0.531 5.531 15 C 0.047 3.953 16 C -0.069 4.069 17 C -0.093 4.093 18 C -0.123 4.123 19 C -0.176 4.176 20 H 0.154 0.846 21 C 0.516 3.484 22 O -0.548 6.548 23 O -0.512 6.512 24 C -0.076 4.076 25 C 0.057 3.943 26 H 0.037 0.963 27 H 0.071 0.929 28 H 0.033 0.967 29 H -0.021 1.021 30 H -0.015 1.015 31 H 0.253 0.747 32 H 0.015 0.985 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.425 0.575 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.031 0.969 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 8.349 -21.066 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.021 4.021 5 C -0.641 4.641 6 H 0.073 0.927 7 C -0.240 4.240 8 N -0.581 5.581 9 Si 0.937 3.063 10 H -0.212 1.212 11 H -0.193 1.193 12 H -0.193 1.193 13 C -0.055 4.055 14 N -0.255 5.255 15 C -0.081 4.081 16 C -0.106 4.106 17 C -0.093 4.093 18 C -0.159 4.159 19 C -0.194 4.194 20 H 0.171 0.829 21 C 0.360 3.640 22 O -0.439 6.439 23 O -0.325 6.325 24 C -0.113 4.113 25 C -0.071 4.071 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.052 0.948 29 H -0.003 1.003 30 H 0.003 0.997 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.153 0.847 40 H 0.287 0.713 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.049 0.951 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.337 8.520 -19.551 21.454 hybrid contribution 1.790 -1.005 -1.835 2.753 sum -0.547 7.515 -21.386 22.674 Atomic orbital electron populations 1.21465 0.94249 1.00443 1.00649 1.21018 0.97000 0.98463 0.92358 0.92192 1.19188 0.93528 0.94914 0.94479 1.22430 1.37964 1.10392 0.93298 0.92738 1.27404 0.94079 0.97266 1.05248 1.70919 1.38168 1.16268 1.32790 0.82960 0.76995 0.74569 0.71799 1.21240 1.19341 1.19340 1.22007 0.96096 0.97761 0.89655 1.61809 1.59670 1.02808 1.01229 1.22264 0.97667 0.88101 1.00058 1.21247 1.01522 0.98443 0.89417 1.21640 0.97895 0.95173 0.94610 1.23259 0.92670 1.03364 0.96643 1.22114 0.90148 1.00913 1.06253 0.82892 1.22638 0.78544 0.77956 0.84821 1.90701 1.71483 1.63197 1.18471 1.84553 1.42768 1.57594 1.47614 1.21203 1.02260 0.91793 0.96069 1.22071 0.96567 0.98807 0.89611 0.94435 0.90980 0.94750 1.00281 0.99667 0.93743 0.96711 0.91666 0.90426 0.95738 0.88964 0.89522 0.88211 0.84707 0.71318 0.92171 0.89499 0.95106 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 8.78 71.98 0.63 -3.51 16 2 C -0.07 -2.81 1.85 -10.79 -0.02 -2.83 16 3 H 0.06 2.43 6.03 -2.39 -0.01 2.41 16 4 C 0.02 0.86 3.76 29.85 0.11 0.97 16 5 C -0.60 -34.25 8.41 25.60 0.22 -34.03 16 6 H 0.05 2.99 7.06 -2.91 -0.02 2.96 16 7 C -0.04 -2.54 5.46 84.65 0.46 -2.07 16 8 N -0.94 -59.49 13.65 21.45 0.29 -59.20 16 9 Si 1.12 50.48 29.90 68.60 2.05 52.53 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 C 0.07 2.50 4.53 86.30 0.39 2.89 16 14 N -0.53 -14.57 4.00 -895.64 -3.58 -18.15 16 15 C 0.05 1.16 5.00 86.41 0.43 1.59 16 16 C -0.07 -1.21 5.87 30.75 0.18 -1.02 16 17 C -0.09 -1.58 2.02 -52.21 -0.11 -1.68 16 18 C -0.12 -1.70 9.51 30.52 0.29 -1.41 16 19 C -0.18 -2.90 5.98 -11.60 -0.07 -2.97 16 20 H 0.15 2.04 8.14 -2.38 -0.02 2.02 16 21 C 0.52 10.33 6.34 71.23 0.45 10.79 16 22 O -0.55 -13.85 17.35 21.97 0.38 -13.47 16 23 O -0.51 -8.77 13.28 -51.45 -0.68 -9.45 16 24 C -0.08 -1.48 5.52 30.76 0.17 -1.31 16 25 C 0.06 1.36 5.49 86.41 0.47 1.84 16 26 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 27 H 0.07 2.28 7.48 -2.39 -0.02 2.27 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 30 H -0.01 -0.84 8.01 -2.39 -0.02 -0.86 16 31 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.08 2.15 5.52 -2.39 -0.01 2.13 16 35 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 36 H 0.09 1.23 8.08 -2.38 -0.02 1.21 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.56 7.92 -2.39 -0.02 1.54 16 39 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.43 3.76 9.10 -74.06 -0.67 3.09 16 41 H 0.06 1.18 6.85 -2.39 -0.02 1.17 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.03 0.78 7.97 -2.39 -0.02 0.76 16 44 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 Total: -1.00 -71.09 347.41 2.48 -68.60 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.41 Total: 11.89 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 3.62 Total: -32.77 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -3.29 Total: -77.34 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.30 Total: -22.92 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -71.09 2.48 -68.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604131070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.182 kcal (2) G-P(sol) polarization free energy of solvation -71.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds