Wall clock time and date at job start Tue Mar 31 2020 05:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46714 * 2 1 4 4 C 1.53004 * 109.46950 * 119.99459 * 2 1 3 5 5 C 1.50700 * 109.47278 * 295.00223 * 4 2 1 6 6 H 1.08004 * 119.99820 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00336 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99305 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00064 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47018 * 89.99896 * 9 7 5 11 11 H 1.48502 * 109.46882 * 209.99394 * 9 7 5 12 12 H 1.48500 * 109.47317 * 329.99705 * 9 7 5 13 13 C 1.52992 * 109.47452 * 239.99637 * 2 1 3 14 14 N 1.46898 * 109.47123 * 61.16438 * 13 2 1 15 15 C 1.46812 * 110.99762 * 175.95682 * 14 13 2 16 16 C 1.53273 * 109.43525 * 170.77132 * 15 14 13 17 17 C 1.53233 * 108.61405 * 55.56164 * 16 15 14 18 18 C 1.52733 * 117.81985 * 163.05320 * 17 16 15 19 19 C 1.52764 * 117.78443 * 94.06086 * 17 16 15 20 20 H 1.09005 * 117.50265 * 0.33221 * 19 17 16 21 21 C 1.50702 * 117.50294 * 215.27342 * 19 17 16 22 22 O 1.20829 * 119.99420 * 265.64059 * 21 19 17 23 23 O 1.34224 * 119.99993 * 85.64564 * 21 19 17 24 24 C 1.53216 * 114.76924 * 308.61780 * 17 16 15 25 25 C 1.46810 * 110.99689 * 51.23346 * 14 13 2 26 26 H 1.09006 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47341 * 300.00563 * 1 2 3 28 28 H 1.09005 * 109.47145 * 60.00661 * 1 2 3 29 29 H 1.08996 * 109.46796 * 54.99997 * 4 2 1 30 30 H 1.09004 * 109.46910 * 174.99991 * 4 2 1 31 31 H 0.97006 * 119.99335 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46853 * 301.16768 * 13 2 1 33 33 H 1.08995 * 109.47495 * 181.16961 * 13 2 1 34 34 H 1.08995 * 109.48171 * 290.75710 * 15 14 13 35 35 H 1.08998 * 109.47901 * 50.78249 * 15 14 13 36 36 H 1.09001 * 109.61067 * 175.31100 * 16 15 14 37 37 H 1.08997 * 109.60997 * 295.82654 * 16 15 14 38 38 H 1.09001 * 117.50674 * 359.73628 * 18 17 16 39 39 H 1.09007 * 117.50169 * 144.78197 * 18 17 16 40 40 H 0.96700 * 116.99753 * 179.97438 * 23 21 19 41 41 H 1.08997 * 109.61730 * 291.64537 * 24 17 16 42 42 H 1.09005 * 109.61191 * 171.13085 * 24 17 16 43 43 H 1.08992 * 109.47524 * 309.21642 * 25 14 13 44 44 H 1.08996 * 109.47969 * 69.23999 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9748 2.3756 7 6 1.9931 -0.4014 3.7284 8 7 2.6763 -1.5184 3.8513 9 14 1.4994 0.5638 5.2495 10 1 0.1722 0.0957 5.7237 11 1 2.5091 0.3540 6.3181 12 1 1.4245 2.0090 4.9161 13 6 2.0400 -0.7213 -1.2491 14 7 1.5735 -0.0128 -2.4484 15 6 2.1233 -0.6214 -3.6661 16 6 1.4405 -0.0102 -4.8947 17 6 1.6096 1.5119 -4.8416 18 6 1.3695 2.3010 -6.1270 19 6 2.7920 2.1236 -5.5910 20 1 3.4521 1.4441 -6.1303 21 6 3.4590 3.3266 -4.9754 22 8 3.1243 4.4390 -5.3079 23 8 4.4248 3.1623 -4.0579 24 6 1.1918 2.1583 -3.5169 25 6 1.8893 1.4188 -2.3699 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6053 -1.7197 1.2953 30 1 3.1263 -0.7994 1.2057 31 1 2.9235 -1.8413 4.7320 32 1 1.6597 -1.7427 -1.2595 33 1 3.1298 -0.7395 -1.2387 34 1 3.1956 -0.4325 -3.7147 35 1 1.9440 -1.6964 -3.6480 36 1 1.9038 -0.3985 -5.8018 37 1 0.3798 -0.2609 -4.8864 38 1 1.0938 1.7385 -7.0190 39 1 0.9161 3.2880 -6.0345 40 1 4.8233 3.9637 -3.6917 41 1 0.1110 2.0824 -3.3975 42 1 1.4902 3.2067 -3.5112 43 1 1.5411 1.8159 -1.4165 44 1 2.9673 1.5582 -2.4499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604131071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:59 Heat of formation + Delta-G solvation = -81.578781 kcal Electronic energy + Delta-G solvation = -22850.844237 eV Core-core repulsion = 19575.065417 eV Total energy + Delta-G solvation = -3275.778820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94041 -39.19284 -37.14532 -36.19295 -34.38253 -32.17273 -31.01033 -29.76090 -26.80565 -25.86137 -24.97523 -23.48428 -22.83429 -21.40565 -21.03504 -19.05923 -18.67155 -18.07860 -16.88531 -16.53214 -16.08553 -15.31739 -14.88248 -14.58342 -14.41321 -14.24986 -14.00294 -13.75486 -13.09007 -12.93643 -12.54207 -12.43751 -12.20418 -11.97372 -11.76271 -11.63624 -11.41024 -11.31578 -11.19167 -10.97509 -10.82431 -10.76134 -10.57271 -10.28878 -10.23499 -10.16653 -9.91613 -9.52957 -9.12946 -8.91517 -8.31650 -7.94963 -5.96794 -3.97780 1.93150 2.74194 3.33472 3.38405 3.39839 3.42926 4.14979 4.34757 4.36339 4.49266 4.54183 4.70383 5.08498 5.17907 5.22664 5.39157 5.40695 5.43170 5.50156 5.56545 5.65545 5.73035 5.74523 5.84109 5.86507 6.00889 6.03152 6.13216 6.20935 6.25467 6.29575 6.45782 6.56360 6.68297 7.03249 7.16400 7.22204 7.44755 7.46750 7.70573 7.70879 7.86624 8.03553 8.47543 9.08563 9.65576 11.14774 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.003706 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.653214 B = 7553.833309 C = 8052.079844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.062 3.938 14 N -0.534 5.534 15 C 0.056 3.944 16 C -0.077 4.077 17 C -0.085 4.085 18 C -0.140 4.140 19 C -0.167 4.167 20 H 0.137 0.863 21 C 0.514 3.486 22 O -0.518 6.518 23 O -0.508 6.508 24 C -0.083 4.083 25 C 0.050 3.950 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.411 0.589 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 5.076 -20.340 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.259 5.259 15 C -0.072 4.072 16 C -0.115 4.115 17 C -0.085 4.085 18 C -0.177 4.177 19 C -0.186 4.186 20 H 0.154 0.846 21 C 0.357 3.643 22 O -0.407 6.407 23 O -0.319 6.319 24 C -0.121 4.121 25 C -0.078 4.078 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.269 0.731 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.941 4.858 -20.477 21.067 hybrid contribution 1.163 1.064 1.152 1.952 sum 0.222 5.922 -19.325 20.214 Atomic orbital electron populations 1.21593 0.95650 1.00744 1.00034 1.21329 0.96063 0.99033 0.94121 0.92470 1.19116 0.95901 0.95579 0.90398 1.21230 1.34537 1.08266 0.91001 0.92630 1.25012 0.95324 0.95103 0.99065 1.69969 1.39088 1.21278 1.23332 0.86643 0.78230 0.80432 0.82991 1.20711 1.21334 1.19939 1.22276 0.96975 0.98041 0.89187 1.61801 1.59794 1.02231 1.02064 1.22051 0.96383 0.98840 0.89952 1.21273 1.02243 0.90367 0.97570 1.21732 0.97068 0.95947 0.93766 1.23182 0.93886 1.02637 0.98008 1.21913 0.92438 0.97913 1.06347 0.84573 1.22335 0.76431 0.89785 0.75756 1.90715 1.62513 1.27058 1.60385 1.84562 1.50394 1.43155 1.53827 1.21318 1.01931 0.97365 0.91463 1.22195 0.97991 0.88675 0.98900 0.94008 0.92859 0.93950 0.96541 0.96960 0.93119 0.91125 0.95495 0.94985 0.90694 0.91376 0.89901 0.87269 0.87563 0.73060 0.89823 0.92194 0.89148 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.74 37.16 0.32 -2.02 16 2 C -0.09 -1.75 1.84 -90.62 -0.17 -1.91 16 3 H 0.06 1.17 6.05 -51.93 -0.31 0.85 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.06 1.06 4.55 -3.83 -0.02 1.05 16 14 N -0.53 -7.64 4.00 -234.45 -0.94 -8.57 16 15 C 0.06 0.66 5.49 -3.73 -0.02 0.64 16 16 C -0.08 -0.72 5.87 -26.47 -0.16 -0.87 16 17 C -0.08 -0.84 2.02 -154.53 -0.31 -1.15 16 18 C -0.14 -1.21 9.51 -26.84 -0.26 -1.46 16 19 C -0.17 -1.60 5.98 -91.87 -0.55 -2.15 16 20 H 0.14 1.08 8.14 -51.93 -0.42 0.65 16 21 C 0.51 5.83 6.35 36.01 0.23 6.06 16 22 O -0.52 -7.20 17.33 -18.75 -0.32 -7.52 16 23 O -0.51 -5.07 13.33 -39.24 -0.52 -5.59 16 24 C -0.08 -0.97 5.52 -26.48 -0.15 -1.12 16 25 C 0.05 0.70 4.92 -3.74 -0.02 0.68 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 28 H 0.04 0.72 7.35 -51.93 -0.38 0.34 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 35 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 1.01 7.91 -51.92 -0.41 0.60 16 40 H 0.41 2.46 9.10 45.56 0.41 2.87 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.72 6.85 -51.93 -0.36 0.36 16 43 H 0.09 1.39 5.43 -51.93 -0.28 1.11 16 44 H 0.04 0.53 8.03 -51.93 -0.42 0.11 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -32.10 348.50 -9.09 -41.19 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.68 Total: -0.46 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -1.60 Total: -14.75 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.20 Total: -34.78 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.85 Total: -13.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.10 -9.09 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604131071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.385 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds