Wall clock time and date at job start Tue Mar 31 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46714 * 2 1 4 4 C 1.53004 * 109.46950 * 119.99459 * 2 1 3 5 5 C 1.50700 * 109.47278 * 295.00223 * 4 2 1 6 6 H 1.08004 * 119.99820 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00336 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99305 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00064 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47018 * 89.99896 * 9 7 5 11 11 H 1.48502 * 109.46882 * 209.99394 * 9 7 5 12 12 H 1.48500 * 109.47317 * 329.99705 * 9 7 5 13 13 C 1.52992 * 109.47452 * 239.99637 * 2 1 3 14 14 N 1.46898 * 109.47123 * 61.16438 * 13 2 1 15 15 C 1.46812 * 110.99762 * 175.95682 * 14 13 2 16 16 C 1.53273 * 109.43525 * 170.77132 * 15 14 13 17 17 C 1.53233 * 108.61405 * 55.56164 * 16 15 14 18 18 C 1.52733 * 117.81985 * 163.05320 * 17 16 15 19 19 C 1.52764 * 117.78443 * 94.06086 * 17 16 15 20 20 H 1.09005 * 117.50265 * 0.33221 * 19 17 16 21 21 C 1.50702 * 117.50294 * 215.27342 * 19 17 16 22 22 O 1.20829 * 119.99420 * 265.64059 * 21 19 17 23 23 O 1.34224 * 119.99993 * 85.64564 * 21 19 17 24 24 C 1.53216 * 114.76924 * 308.61780 * 17 16 15 25 25 C 1.46810 * 110.99689 * 51.23346 * 14 13 2 26 26 H 1.09006 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47341 * 300.00563 * 1 2 3 28 28 H 1.09005 * 109.47145 * 60.00661 * 1 2 3 29 29 H 1.08996 * 109.46796 * 54.99997 * 4 2 1 30 30 H 1.09004 * 109.46910 * 174.99991 * 4 2 1 31 31 H 0.97006 * 119.99335 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46853 * 301.16768 * 13 2 1 33 33 H 1.08995 * 109.47495 * 181.16961 * 13 2 1 34 34 H 1.08995 * 109.48171 * 290.75710 * 15 14 13 35 35 H 1.08998 * 109.47901 * 50.78249 * 15 14 13 36 36 H 1.09001 * 109.61067 * 175.31100 * 16 15 14 37 37 H 1.08997 * 109.60997 * 295.82654 * 16 15 14 38 38 H 1.09001 * 117.50674 * 359.73628 * 18 17 16 39 39 H 1.09007 * 117.50169 * 144.78197 * 18 17 16 40 40 H 0.96700 * 116.99753 * 179.97438 * 23 21 19 41 41 H 1.08997 * 109.61730 * 291.64537 * 24 17 16 42 42 H 1.09005 * 109.61191 * 171.13085 * 24 17 16 43 43 H 1.08992 * 109.47524 * 309.21642 * 25 14 13 44 44 H 1.08996 * 109.47969 * 69.23999 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9748 2.3756 7 6 1.9931 -0.4014 3.7284 8 7 2.6763 -1.5184 3.8513 9 14 1.4994 0.5638 5.2495 10 1 0.1722 0.0957 5.7237 11 1 2.5091 0.3540 6.3181 12 1 1.4245 2.0090 4.9161 13 6 2.0400 -0.7213 -1.2491 14 7 1.5735 -0.0128 -2.4484 15 6 2.1233 -0.6214 -3.6661 16 6 1.4405 -0.0102 -4.8947 17 6 1.6096 1.5119 -4.8416 18 6 1.3695 2.3010 -6.1270 19 6 2.7920 2.1236 -5.5910 20 1 3.4521 1.4441 -6.1303 21 6 3.4590 3.3266 -4.9754 22 8 3.1243 4.4390 -5.3079 23 8 4.4248 3.1623 -4.0579 24 6 1.1918 2.1583 -3.5169 25 6 1.8893 1.4188 -2.3699 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6053 -1.7197 1.2953 30 1 3.1263 -0.7994 1.2057 31 1 2.9235 -1.8413 4.7320 32 1 1.6597 -1.7427 -1.2595 33 1 3.1298 -0.7395 -1.2387 34 1 3.1956 -0.4325 -3.7147 35 1 1.9440 -1.6964 -3.6480 36 1 1.9038 -0.3985 -5.8018 37 1 0.3798 -0.2609 -4.8864 38 1 1.0938 1.7385 -7.0190 39 1 0.9161 3.2880 -6.0345 40 1 4.8233 3.9637 -3.6917 41 1 0.1110 2.0824 -3.3975 42 1 1.4902 3.2067 -3.5112 43 1 1.5411 1.8159 -1.4165 44 1 2.9673 1.5582 -2.4499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604131071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:58 Heat of formation + Delta-G solvation = -101.403993 kcal Electronic energy + Delta-G solvation = -22851.703923 eV Core-core repulsion = 19575.065417 eV Total energy + Delta-G solvation = -3276.638506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78889 -40.19233 -38.28450 -37.11687 -35.95726 -34.10305 -31.97992 -30.93100 -28.72714 -26.98793 -26.17251 -24.70302 -24.32352 -22.56022 -21.80797 -20.38360 -19.80371 -18.95958 -18.52851 -17.70157 -17.21123 -16.64988 -16.23050 -15.92984 -15.83058 -15.25454 -15.11549 -14.76245 -14.38510 -14.26586 -13.94666 -13.67769 -13.38478 -13.15737 -13.06322 -12.78463 -12.71826 -12.64005 -12.59915 -12.45259 -12.21759 -12.10077 -11.99309 -11.81512 -11.58190 -11.26342 -11.08656 -10.98841 -10.85575 -10.64517 -10.51503 -9.14181 -8.16970 -6.25849 1.07891 1.40211 1.41005 1.51794 2.03845 2.42168 2.64958 3.03430 3.16629 3.58939 3.61016 3.78078 3.86287 4.08587 4.24634 4.34132 4.37658 4.48568 4.51433 4.54487 4.56463 4.64766 4.83952 4.87202 4.90088 4.92383 4.95501 5.01627 5.05467 5.11355 5.13704 5.25642 5.31606 5.37701 5.49048 5.52282 5.54625 5.57138 5.82571 5.89780 6.16099 6.28947 6.35108 6.90064 6.94177 7.42369 8.95156 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.003706 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.653214 B = 7553.833309 C = 8052.079844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.077 4.077 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.074 3.926 14 N -0.532 5.532 15 C 0.051 3.949 16 C -0.067 4.067 17 C -0.092 4.092 18 C -0.124 4.124 19 C -0.174 4.174 20 H 0.158 0.842 21 C 0.513 3.487 22 O -0.550 6.550 23 O -0.512 6.512 24 C -0.077 4.077 25 C 0.054 3.946 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.066 0.934 29 H -0.008 1.008 30 H -0.016 1.016 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.015 0.985 34 H 0.028 0.972 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.425 0.575 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 5.496 -21.985 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.189 1.189 13 C -0.054 4.054 14 N -0.256 5.256 15 C -0.076 4.076 16 C -0.105 4.105 17 C -0.093 4.093 18 C -0.161 4.161 19 C -0.192 4.192 20 H 0.176 0.824 21 C 0.357 3.643 22 O -0.441 6.441 23 O -0.326 6.326 24 C -0.115 4.115 25 C -0.074 4.074 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.010 0.990 30 H 0.002 0.998 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.157 0.843 39 H 0.113 0.887 40 H 0.286 0.714 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.788 5.287 -22.131 22.824 hybrid contribution 1.487 0.934 1.671 2.425 sum -0.301 6.221 -20.459 21.387 Atomic orbital electron populations 1.21471 0.94463 1.00603 1.00335 1.21133 0.96883 0.98359 0.93234 0.92813 1.19003 0.93957 0.94763 0.92699 1.21626 1.34349 1.08535 0.92103 0.92240 1.25922 0.95242 0.96091 1.02556 1.70103 1.40286 1.22966 1.24232 0.85535 0.78044 0.79273 0.78745 1.19835 1.20936 1.18871 1.22002 0.96123 0.97891 0.89404 1.61809 1.59734 1.02224 1.01878 1.22199 0.96418 0.99382 0.89627 1.21257 1.02458 0.89494 0.97240 1.21664 0.97831 0.96428 0.93360 1.23263 0.92709 1.02061 0.98041 1.22123 0.93106 0.97514 1.06468 0.82410 1.22759 0.76151 0.89971 0.75371 1.90701 1.63543 1.28391 1.61483 1.84545 1.50156 1.44336 1.53518 1.21208 1.01652 0.96797 0.91829 1.22124 0.97599 0.88656 0.99064 0.94302 0.94548 0.91503 0.99007 0.99809 0.92956 0.91151 0.96627 0.95402 0.89996 0.88404 0.89479 0.84349 0.88666 0.71398 0.89701 0.92840 0.91134 0.95549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.74 71.98 0.63 -3.59 16 2 C -0.08 -3.17 1.84 -10.80 -0.02 -3.19 16 3 H 0.05 2.24 6.05 -2.39 -0.01 2.23 16 4 C 0.03 1.76 4.45 29.85 0.13 1.90 16 5 C -0.53 -30.01 8.41 25.60 0.22 -29.80 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 8 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 13 C 0.07 2.53 4.55 86.30 0.39 2.92 16 14 N -0.53 -14.61 4.00 -895.66 -3.58 -18.19 16 15 C 0.05 1.10 5.49 86.41 0.47 1.57 16 16 C -0.07 -1.02 5.87 30.76 0.18 -0.84 16 17 C -0.09 -1.58 2.02 -52.20 -0.11 -1.69 16 18 C -0.12 -1.74 9.51 30.52 0.29 -1.45 16 19 C -0.17 -2.87 5.98 -11.60 -0.07 -2.94 16 20 H 0.16 1.91 8.14 -2.38 -0.02 1.89 16 21 C 0.51 11.03 6.35 71.24 0.45 11.48 16 22 O -0.55 -14.93 17.33 21.96 0.38 -14.55 16 23 O -0.51 -9.80 13.33 -51.36 -0.68 -10.48 16 24 C -0.08 -1.70 5.52 30.75 0.17 -1.53 16 25 C 0.05 1.46 4.92 86.41 0.43 1.88 16 26 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.04 1.47 6.95 -2.39 -0.02 1.46 16 28 H 0.07 2.19 7.35 -2.38 -0.02 2.17 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 31 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 35 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 36 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.60 7.91 -2.38 -0.02 1.58 16 40 H 0.42 4.89 9.10 -74.06 -0.67 4.22 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.25 6.85 -2.38 -0.02 1.23 16 43 H 0.07 2.18 5.43 -2.39 -0.01 2.17 16 44 H 0.03 0.77 8.03 -2.39 -0.02 0.75 16 Total: -1.00 -70.15 348.50 2.36 -67.78 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.31 Total: 10.68 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 3.63 Total: -24.86 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -3.29 Total: -75.28 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.30 Total: -25.03 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.15 2.36 -67.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604131071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.623 kcal (2) G-P(sol) polarization free energy of solvation -70.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds