Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46754 * 2 1 4 4 C 1.52995 * 109.47298 * 240.00156 * 2 1 3 5 5 C 1.50697 * 109.47517 * 64.99772 * 4 2 1 6 6 H 1.08006 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00176 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00019 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00054 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46958 * 60.00062 * 9 7 5 11 11 H 1.48501 * 109.47193 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47133 * 300.00292 * 9 7 5 13 13 C 1.53005 * 109.47097 * 119.99592 * 2 1 3 14 14 N 1.46901 * 109.46972 * 183.13241 * 13 2 1 15 15 C 1.46802 * 110.99706 * 196.05411 * 14 13 2 16 16 C 1.53270 * 109.44430 * 170.80296 * 15 14 13 17 17 C 1.53215 * 108.61703 * 55.59116 * 16 15 14 18 18 C 1.52759 * 117.79190 * 94.00046 * 17 16 15 19 19 C 1.52843 * 117.85906 * 162.97596 * 17 16 15 20 20 H 1.09000 * 117.52290 * 359.73528 * 19 17 16 21 21 C 1.50702 * 117.49559 * 144.80446 * 19 17 16 22 22 O 1.20824 * 120.00080 * 359.92871 * 21 19 17 23 23 O 1.34229 * 120.00099 * 179.97438 * 21 19 17 24 24 C 1.53218 * 114.74390 * 308.58434 * 17 16 15 25 25 C 1.46810 * 110.99526 * 71.35622 * 14 13 2 26 26 H 1.08995 * 109.47196 * 294.54021 * 1 2 3 27 27 H 1.09004 * 109.47320 * 54.54433 * 1 2 3 28 28 H 1.09003 * 109.46545 * 174.53721 * 1 2 3 29 29 H 1.09001 * 109.47185 * 185.00167 * 4 2 1 30 30 H 1.09004 * 109.47158 * 304.99192 * 4 2 1 31 31 H 0.97005 * 120.00149 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46425 * 63.13424 * 13 2 1 33 33 H 1.09000 * 109.47024 * 303.13627 * 13 2 1 34 34 H 1.08999 * 109.48253 * 50.80798 * 15 14 13 35 35 H 1.09002 * 109.47950 * 290.79460 * 15 14 13 36 36 H 1.08996 * 109.60996 * 295.84993 * 16 15 14 37 37 H 1.08999 * 109.75619 * 175.41734 * 16 15 14 38 38 H 1.09001 * 117.51098 * 0.34771 * 18 17 16 39 39 H 1.09007 * 117.50945 * 215.32105 * 18 17 16 40 40 H 0.96702 * 116.99912 * 179.97438 * 23 21 19 41 41 H 1.09000 * 109.61073 * 171.16179 * 24 17 16 42 42 H 1.08999 * 109.60907 * 291.67606 * 24 17 16 43 43 H 1.08999 * 109.48191 * 309.18581 * 25 14 13 44 44 H 1.09001 * 109.47626 * 69.21222 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9934 -0.4017 -3.7282 8 7 2.6766 -1.5187 -3.8510 9 14 1.4986 0.5626 -5.2497 10 1 2.0896 1.9235 -5.1870 11 1 1.9937 -0.1374 -6.4621 12 1 0.0185 0.6680 -5.3093 13 6 2.0400 -0.7212 1.2493 14 7 3.5071 -0.6560 1.2877 15 6 4.0526 -1.6361 2.2348 16 6 5.5763 -1.7003 2.0816 17 6 6.1462 -0.2901 2.2658 18 6 6.6220 0.1092 3.6614 19 6 7.6417 -0.1558 2.5515 20 1 8.2269 -1.0733 2.6142 21 6 8.3580 1.0337 1.9658 22 8 7.7500 1.8362 1.2977 23 8 9.6715 1.2013 2.1855 24 6 5.4834 0.7875 1.4014 25 6 3.9653 0.7046 1.5949 26 1 -0.3633 0.4268 0.9348 27 1 -0.3634 0.5961 -0.8371 28 1 -0.3632 -1.0231 -0.0978 29 1 3.1264 -0.7994 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 2.9246 -1.8413 -4.7316 32 1 1.7232 -1.7638 1.2216 33 1 1.6315 -0.2408 2.1384 34 1 3.6250 -2.6173 2.0291 35 1 3.8020 -1.3366 3.2525 36 1 5.8287 -2.0701 1.0879 37 1 5.9948 -2.3656 2.8368 38 1 6.5363 -0.6338 4.4543 39 1 6.4696 1.1440 3.9684 40 1 10.0872 1.9791 1.7889 41 1 5.8382 1.7716 1.7077 42 1 5.7285 0.6175 0.3531 43 1 3.4747 1.4128 0.9271 44 1 3.7169 0.9472 2.6281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604131072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = -76.408202 kcal Electronic energy + Delta-G solvation = -22870.670320 eV Core-core repulsion = 19595.115713 eV Total energy + Delta-G solvation = -3275.554607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84537 -39.03012 -36.98737 -36.00287 -34.31303 -32.07159 -30.74336 -29.68403 -26.86964 -25.48674 -24.78650 -23.24008 -22.76397 -21.82593 -20.61009 -18.76393 -18.52454 -18.18855 -16.61932 -16.22171 -15.86064 -15.51204 -14.83349 -14.48372 -14.22572 -14.14625 -13.70511 -13.52321 -13.04342 -12.78639 -12.54845 -12.23740 -12.08573 -11.94827 -11.71360 -11.59940 -11.32497 -11.21232 -10.99426 -10.79270 -10.75645 -10.62457 -10.35661 -10.25871 -9.95861 -9.93712 -9.70320 -9.51321 -8.97932 -8.78004 -8.17516 -7.69082 -5.82544 -3.82524 1.99746 2.82949 3.42101 3.46289 3.48832 3.56540 4.30796 4.42811 4.59047 4.60498 4.68892 4.97278 5.13458 5.32442 5.42015 5.47853 5.53004 5.61623 5.64169 5.70968 5.73652 5.80040 5.93502 5.98869 6.06763 6.15203 6.21770 6.27846 6.34029 6.35421 6.47173 6.49354 6.60292 6.73209 7.05597 7.11259 7.37988 7.62684 7.66178 7.81766 7.91765 8.14705 8.29117 8.64183 9.25386 9.79262 11.28602 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.004449 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.379651 B = 6291.705970 C = 7257.695203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.050 0.950 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.066 3.934 14 N -0.527 5.527 15 C 0.063 3.937 16 C -0.080 4.080 17 C -0.072 4.072 18 C -0.145 4.145 19 C -0.169 4.169 20 H 0.133 0.867 21 C 0.506 3.494 22 O -0.501 6.501 23 O -0.518 6.518 24 C -0.078 4.078 25 C 0.060 3.940 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.008 0.992 31 H 0.257 0.743 32 H 0.066 0.934 33 H 0.017 0.983 34 H 0.075 0.925 35 H 0.026 0.974 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.409 0.591 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.547 1.726 17.254 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.103 4.103 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.061 4.061 14 N -0.251 5.251 15 C -0.065 4.065 16 C -0.118 4.118 17 C -0.072 4.072 18 C -0.182 4.182 19 C -0.188 4.188 20 H 0.151 0.849 21 C 0.349 3.651 22 O -0.388 6.388 23 O -0.330 6.330 24 C -0.116 4.116 25 C -0.068 4.068 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.268 0.732 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 9.437 1.360 16.650 19.187 hybrid contribution -0.072 1.165 -0.427 1.243 sum 9.365 2.525 16.223 18.901 Atomic orbital electron populations 1.21694 0.96566 1.01166 0.99497 1.21241 0.94071 0.99253 0.95777 0.92677 1.19028 0.97515 0.94328 0.89124 1.21297 1.34209 1.08122 0.91472 0.93145 1.24969 0.95525 0.95066 0.98782 1.69965 1.39240 1.21235 1.23091 0.86799 0.78734 0.80264 0.82989 1.20435 1.21482 1.20483 1.22225 0.85876 1.00718 0.97286 1.61616 1.09423 1.04712 1.49326 1.21994 0.94183 0.96844 0.93462 1.21284 0.95175 0.92365 1.02975 1.21774 0.90131 0.98678 0.96664 1.23173 0.99518 1.03341 0.92214 1.21818 0.92909 0.96901 1.07147 0.84927 1.22445 0.79796 0.85698 0.77188 1.90748 1.66645 1.44754 1.36675 1.84509 1.25032 1.50885 1.72613 1.21477 0.93273 0.96634 1.00203 1.22149 0.95519 0.90874 0.98240 0.95423 0.92115 0.93552 0.94746 0.97402 0.93294 0.91535 0.96528 0.90631 0.95622 0.89806 0.91536 0.87417 0.88243 0.73230 0.89770 0.89975 0.89932 0.95986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.91 37.16 0.33 -2.18 16 2 C -0.08 -1.76 2.33 -90.62 -0.21 -1.97 16 3 H 0.05 1.18 6.48 -51.93 -0.34 0.84 16 4 C 0.04 0.97 4.38 -27.89 -0.12 0.85 16 5 C -0.51 -14.71 8.48 -34.44 -0.29 -15.00 16 6 H 0.05 1.41 7.06 -52.48 -0.37 1.04 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 9 Si 0.88 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.07 1.16 4.39 -3.82 -0.02 1.15 16 14 N -0.53 -8.92 3.83 -234.44 -0.90 -9.81 16 15 C 0.06 0.86 5.49 -3.74 -0.02 0.84 16 16 C -0.08 -0.97 5.87 -26.48 -0.16 -1.13 16 17 C -0.07 -0.88 2.02 -154.49 -0.31 -1.20 16 18 C -0.15 -1.39 9.62 -26.84 -0.26 -1.65 16 19 C -0.17 -1.79 6.04 -91.83 -0.55 -2.35 16 20 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 21 C 0.51 6.01 8.09 36.01 0.29 6.30 16 22 O -0.50 -7.50 13.90 -18.75 -0.26 -7.76 16 23 O -0.52 -4.73 13.42 -39.26 -0.53 -5.26 16 24 C -0.08 -1.19 4.32 -26.48 -0.11 -1.31 16 25 C 0.06 0.95 5.35 -3.74 -0.02 0.93 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.24 7.12 -51.93 -0.37 0.87 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.98 7.56 -51.93 -0.39 0.59 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.07 1.16 7.82 -51.93 -0.41 0.76 16 33 H 0.02 0.27 8.06 -51.93 -0.42 -0.15 16 34 H 0.08 1.01 7.88 -51.93 -0.41 0.61 16 35 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.41 2.05 9.10 45.56 0.41 2.46 16 41 H 0.08 1.28 6.01 -51.93 -0.31 0.97 16 42 H 0.08 1.50 8.12 -51.93 -0.42 1.07 16 43 H 0.08 1.44 6.34 -51.93 -0.33 1.11 16 44 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -33.13 347.20 -9.00 -42.12 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.71 Total: 0.20 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -1.55 Total: -15.14 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.16 Total: -36.68 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.79 Total: -13.01 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.13 -9.00 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604131072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.284 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds