Wall clock time and date at job start Tue Mar 31 2020 05:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.05577 * 2 1 4 4 C 1.53870 * 110.03375 * 121.42141 * 2 1 3 5 5 H 1.08997 * 110.07360 * 359.97438 * 4 2 1 6 6 N 1.46906 * 110.02919 * 238.56805 * 4 2 1 7 7 C 1.46901 * 110.99537 * 156.38206 * 6 4 2 8 8 C 1.52996 * 109.47240 * 174.70827 * 7 6 4 9 9 C 1.50700 * 115.55140 * 65.16159 * 8 7 6 10 10 H 1.08000 * 120.00490 * 264.98288 * 9 8 7 11 11 C 1.37880 * 119.99773 * 84.98118 * 9 8 7 12 12 N 1.31510 * 120.00005 * 353.07999 * 11 9 8 13 13 Si 1.86804 * 120.00208 * 173.08149 * 11 9 8 14 14 H 1.48502 * 109.47058 * 89.99695 * 13 11 9 15 15 H 1.48491 * 109.47387 * 210.00118 * 13 11 9 16 16 H 1.48509 * 109.46717 * 329.99996 * 13 11 9 17 17 C 1.53004 * 117.49911 * 279.49970 * 8 7 6 18 18 C 1.52995 * 117.50437 * 210.83647 * 8 7 6 19 19 C 1.54270 * 106.60016 * 119.28511 * 4 2 1 20 20 C 1.54888 * 104.30954 * 336.32623 * 19 4 2 21 21 C 1.54267 * 110.03251 * 238.58993 * 2 1 3 22 22 H 1.08997 * 110.49157 * 145.50967 * 21 2 1 23 23 C 1.53002 * 110.48711 * 22.99845 * 21 2 1 24 24 C 1.50694 * 109.47333 * 174.99986 * 23 21 2 25 25 O 1.20828 * 120.00204 * 0.02562 * 24 23 21 26 26 O 1.34229 * 120.00640 * 180.02562 * 24 23 21 27 27 H 1.08998 * 109.47027 * 300.02972 * 1 2 3 28 28 H 1.08996 * 109.47378 * 60.03634 * 1 2 3 29 29 H 1.09004 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.00895 * 111.00343 * 32.43051 * 6 4 2 31 31 H 1.08999 * 109.47112 * 294.70501 * 7 6 4 32 32 H 1.08996 * 109.47402 * 54.70751 * 7 6 4 33 33 H 0.97003 * 120.00061 * 185.05104 * 12 11 9 34 34 H 1.09006 * 117.49761 * 359.97438 * 17 8 7 35 35 H 1.08996 * 117.50039 * 145.01435 * 17 8 7 36 36 H 1.08997 * 117.50378 * 214.97988 * 18 8 7 37 37 H 1.09004 * 117.49226 * 359.97438 * 18 8 7 38 38 H 1.09004 * 110.48090 * 95.06439 * 19 4 2 39 39 H 1.08995 * 110.48865 * 217.57479 * 19 4 2 40 40 H 1.09004 * 110.75514 * 156.32502 * 20 19 4 41 41 H 1.09002 * 110.75397 * 279.68663 * 20 19 4 42 42 H 1.08997 * 109.47588 * 295.00285 * 23 21 2 43 43 H 1.09007 * 109.46825 * 55.00141 * 23 21 2 44 44 H 0.96696 * 117.00885 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7536 1.2336 5 1 1.2235 -1.1193 1.8331 6 7 2.9057 0.1335 2.0405 7 6 2.9628 -0.3196 3.4368 8 6 3.9558 0.5469 4.2139 9 6 3.5756 1.9976 4.3617 10 1 3.9557 2.7293 3.6641 11 6 2.7425 2.3909 5.3875 12 7 2.1711 1.4875 6.1536 13 14 2.4254 4.2069 5.6893 14 1 1.2466 4.6418 4.8977 15 1 2.1617 4.4301 7.1334 16 1 3.6161 4.9926 5.2763 17 6 5.4431 0.2174 4.0717 18 6 4.7078 -0.1080 5.3742 19 6 2.8875 -1.9407 0.7033 20 6 2.3290 -2.1935 -0.7191 21 6 2.0584 -0.7553 -1.2369 22 1 2.9798 -0.2985 -1.5982 23 6 1.0024 -0.7751 -2.3439 24 6 1.5836 -1.4087 -3.5815 25 8 2.7253 -1.8042 -3.5784 26 8 0.8332 -1.5336 -4.6874 27 1 -0.3633 0.5143 0.8897 28 1 -0.3634 0.5132 -0.8903 29 1 -0.3633 -1.0277 0.0005 30 1 2.5872 1.0891 1.9833 31 1 1.9743 -0.2327 3.8877 32 1 3.2863 -1.3600 3.4682 33 1 1.5285 1.7593 6.8275 34 1 5.7142 -0.6170 3.4248 35 1 6.1466 1.0498 4.0854 36 1 4.9278 0.5104 6.2444 37 1 4.4947 -1.1562 5.5842 38 1 3.9440 -1.6766 0.6569 39 1 2.7421 -2.8191 1.3320 40 1 3.0689 -2.6979 -1.3406 41 1 1.4041 -2.7686 -0.6743 42 1 0.1388 -1.3515 -2.0120 43 1 0.6931 0.2455 -2.5692 44 1 1.2495 -1.9467 -5.4562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609833851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:44 Heat of formation + Delta-G solvation = -87.586621 kcal Electronic energy + Delta-G solvation = -22668.461256 eV Core-core repulsion = 19392.421917 eV Total energy + Delta-G solvation = -3276.039340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58992 -38.89406 -36.68611 -36.22271 -33.69145 -31.88246 -31.15342 -30.27374 -26.24731 -25.40131 -25.13709 -23.08096 -21.93315 -20.93196 -19.92078 -19.18040 -18.57202 -18.12885 -16.97321 -16.09809 -15.89295 -15.35456 -14.76340 -14.59097 -14.48558 -13.79804 -13.50270 -13.46124 -13.06284 -12.69595 -12.55343 -12.46249 -12.24104 -11.79381 -11.66652 -11.32617 -11.01420 -10.94667 -10.86012 -10.76983 -10.70487 -10.52015 -10.41522 -10.36679 -10.27815 -10.23204 -10.05844 -9.34037 -8.70244 -8.38371 -8.00965 -7.41460 -6.00004 -4.05730 2.06468 2.88407 3.28114 3.36460 3.40482 4.41376 4.52862 4.60948 4.76776 4.93318 5.07829 5.21445 5.29110 5.35402 5.40281 5.49002 5.54419 5.64227 5.73005 5.80974 5.89698 5.98788 6.04067 6.12858 6.20231 6.25083 6.33660 6.34569 6.44852 6.53885 6.56161 6.64113 6.67813 6.92048 6.92927 7.00966 7.22329 7.58148 7.62496 7.72820 7.90631 8.10410 8.37311 8.54378 8.97611 9.59597 11.07827 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.003850 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.934042 B = 7270.048398 C = 7897.353626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.082 0.918 4 C 0.087 3.913 5 H 0.040 0.960 6 N -0.674 5.674 7 C 0.107 3.893 8 C 0.052 3.948 9 C -0.492 4.492 10 H 0.059 0.941 11 C 0.070 3.930 12 N -0.880 5.880 13 Si 0.886 3.114 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.200 4.200 18 C -0.164 4.164 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.073 4.073 22 H 0.087 0.913 23 C -0.108 4.108 24 C 0.474 3.526 25 O -0.510 6.510 26 O -0.523 6.523 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.346 0.654 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 -6.046 -16.531 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.100 0.900 4 C -0.023 4.023 5 H 0.058 0.942 6 N -0.306 5.306 7 C -0.022 4.022 8 C 0.051 3.949 9 C -0.530 4.530 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.517 5.517 13 Si 0.714 3.286 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.237 4.237 18 C -0.202 4.202 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.091 4.091 22 H 0.105 0.895 23 C -0.145 4.145 24 C 0.317 3.683 25 O -0.398 6.398 26 O -0.335 6.335 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.165 0.835 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.560 -6.292 -16.129 17.903 hybrid contribution -0.893 0.900 0.153 1.277 sum -5.454 -5.391 -15.976 17.721 Atomic orbital electron populations 1.22017 0.95316 1.01590 1.01887 1.21931 0.95139 1.00024 0.93939 0.89954 1.22163 0.93566 0.93571 0.93044 0.94201 1.60611 1.53148 1.05726 1.11116 1.21439 0.98898 0.95674 0.86167 1.18727 0.87015 0.94372 0.94750 1.20470 1.29794 0.90969 1.11767 0.92252 1.24998 0.95926 0.96936 0.95408 1.69994 1.27297 1.32725 1.21704 0.86693 0.78529 0.86030 0.77362 1.20804 1.21322 1.19824 1.22862 0.98600 1.01422 1.00857 1.22531 1.06754 0.98359 0.92552 1.22401 1.00981 0.97113 0.94561 1.22621 1.00621 0.95464 0.96820 1.21887 0.97258 0.97395 0.92587 0.89509 1.21649 1.00865 1.02431 0.89577 1.23791 0.84177 0.75848 0.84490 1.90728 1.19344 1.45986 1.83719 1.84557 1.48905 1.76013 1.24040 0.92352 0.92514 0.92658 0.83475 0.94845 0.94589 0.93185 0.91717 0.91000 0.90434 0.92277 0.90358 0.92606 0.91031 0.92322 0.87456 0.87621 0.73495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 7.74 37.16 0.29 -1.33 16 2 C -0.09 -1.15 3.11 -89.50 -0.28 -1.43 16 3 H 0.08 1.11 7.49 -51.93 -0.39 0.72 16 4 C 0.09 1.36 2.89 -66.59 -0.19 1.16 16 5 H 0.04 0.66 7.41 -51.93 -0.39 0.28 16 6 N -0.67 -12.89 6.22 -105.54 -0.66 -13.55 16 7 C 0.11 2.38 5.35 -3.83 -0.02 2.36 16 8 C 0.05 1.27 1.56 -155.66 -0.24 1.03 16 9 C -0.49 -13.10 8.32 -34.44 -0.29 -13.39 16 10 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 11 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 12 N -0.88 -24.62 12.95 55.43 0.72 -23.90 16 13 Si 0.89 20.80 29.55 -169.99 -5.02 15.78 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.20 -4.54 9.96 -26.69 -0.27 -4.80 16 18 C -0.16 -3.94 9.45 -26.69 -0.25 -4.20 16 19 C -0.11 -1.64 6.36 -25.07 -0.16 -1.80 16 20 C -0.12 -1.45 5.77 -24.55 -0.14 -1.59 16 21 C -0.07 -0.84 2.37 -88.77 -0.21 -1.05 16 22 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 23 C -0.11 -0.97 4.00 -27.88 -0.11 -1.08 16 24 C 0.47 4.79 8.14 36.00 0.29 5.08 16 25 O -0.51 -6.80 15.50 -18.75 -0.29 -7.09 16 26 O -0.52 -4.01 13.42 -39.26 -0.53 -4.54 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.49 6.62 -51.93 -0.34 0.14 16 29 H 0.05 0.55 7.63 -51.93 -0.40 0.15 16 30 H 0.35 6.91 7.62 -39.29 -0.30 6.61 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.77 7.97 -51.93 -0.41 0.36 16 33 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.94 7.31 -51.93 -0.38 0.56 16 41 H 0.06 0.65 7.97 -51.93 -0.41 0.24 16 42 H 0.11 0.83 6.83 -51.93 -0.35 0.48 16 43 H 0.11 0.79 7.40 -51.92 -0.38 0.41 16 44 H 0.41 1.51 9.10 45.56 0.41 1.92 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -29.97 351.80 -8.83 -38.81 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.68 Total: 8.42 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.68 Total: -19.22 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.06 Total: -37.45 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.82 Total: -11.63 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.97 -8.83 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609833851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.780 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds