Wall clock time and date at job start Tue Mar 31 2020 05:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48498 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47234 * 300.00331 * 3 2 1 6 6 H 1.48507 * 109.47026 * 59.99895 * 3 2 1 7 7 C 1.38812 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99739 * 169.96398 * 7 2 1 9 9 N 1.36933 * 120.00210 * 350.23869 * 7 2 1 10 10 C 1.46961 * 120.59311 * 147.66308 * 9 7 2 11 11 C 1.53807 * 108.39854 * 124.76194 * 10 9 7 12 12 N 1.46960 * 108.58070 * 49.63573 * 11 10 9 13 13 C 1.34777 * 120.59396 * 124.67361 * 12 11 10 14 14 O 1.21593 * 119.99770 * 185.15939 * 13 12 11 15 15 N 1.34771 * 120.00018 * 5.15448 * 13 12 11 16 16 C 1.46505 * 120.00021 * 175.01962 * 15 13 12 17 17 C 1.52992 * 109.47206 * 275.00237 * 16 15 13 18 18 C 1.53004 * 109.47360 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46962 * 59.99584 * 18 17 16 20 20 C 1.53002 * 109.47394 * 300.00311 * 19 18 17 21 21 C 1.52994 * 109.46995 * 59.99733 * 20 19 18 22 22 C 1.46970 * 118.81425 * 304.64909 * 12 11 10 23 23 C 1.46960 * 120.59378 * 327.94858 * 9 7 2 24 24 H 0.96995 * 120.00006 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.60924 * 244.54314 * 10 9 7 26 26 H 1.09004 * 109.61153 * 5.05217 * 10 9 7 27 27 H 1.09004 * 109.73826 * 289.84764 * 11 10 9 28 28 H 1.09000 * 109.67629 * 169.38946 * 11 10 9 29 29 H 0.96996 * 120.00109 * 355.01625 * 15 13 12 30 30 H 1.09008 * 109.46912 * 34.99858 * 16 15 13 31 31 H 1.09005 * 109.46970 * 300.00158 * 17 16 15 32 32 H 1.09003 * 109.47598 * 59.99462 * 17 16 15 33 33 H 1.09000 * 109.46475 * 299.99750 * 18 17 16 34 34 H 1.08998 * 109.46783 * 179.97438 * 18 17 16 35 35 H 1.09003 * 109.46773 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.46922 * 60.00556 * 19 18 17 37 37 H 1.09003 * 109.46491 * 300.00333 * 20 19 18 38 38 H 1.08991 * 109.47213 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47192 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47384 * 60.00575 * 21 20 19 41 41 H 1.08996 * 109.60642 * 295.48462 * 22 12 11 42 42 H 1.08997 * 109.75487 * 175.05394 * 22 12 11 43 43 H 1.09002 * 109.60937 * 354.94315 * 23 9 7 44 44 H 1.09001 * 109.61245 * 115.28406 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0779 -1.2092 -0.1635 9 7 1.3406 -2.3795 0.2000 10 6 1.7943 -3.6179 -0.4482 11 6 2.0196 -4.6812 0.6401 12 7 0.8306 -4.7278 1.5025 13 6 0.1714 -5.8866 1.6999 14 8 -0.8635 -5.8963 2.3382 15 7 0.6592 -7.0347 1.1896 16 6 0.0036 -8.3088 1.4949 17 6 0.5311 -8.8478 2.8260 18 6 -0.1531 -10.1787 3.1445 19 6 0.1467 -11.1853 2.0319 20 6 -0.3809 -10.6463 0.7007 21 6 0.3032 -9.3155 0.3823 22 6 0.3734 -3.4882 2.1463 23 6 0.1514 -2.4261 1.0623 24 1 -0.4850 0.8400 -0.0004 25 1 1.0346 -3.9635 -1.1492 26 1 2.7280 -3.4321 -0.9792 27 1 2.8937 -4.4184 1.2361 28 1 2.1730 -5.6552 0.1755 29 1 1.4442 -7.0174 0.6202 30 1 -1.0733 -8.1554 1.5662 31 1 1.6080 -9.0011 2.7547 32 1 0.3181 -8.1304 3.6186 33 1 -1.2299 -10.0257 3.2157 34 1 0.2232 -10.5628 4.0927 35 1 -0.3404 -12.1337 2.2591 36 1 1.2235 -11.3383 1.9608 37 1 -1.4578 -10.4934 0.7720 38 1 -0.1678 -11.3636 -0.0917 39 1 -0.0730 -8.9312 -0.5658 40 1 1.3801 -9.4683 0.3111 41 1 1.1303 -3.1406 2.8494 42 1 -0.5614 -3.6713 2.6760 43 1 -0.0001 -1.4530 1.5293 44 1 -0.7231 -2.6858 0.4658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070140932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:58 Heat of formation + Delta-G solvation = -15.195361 kcal Electronic energy + Delta-G solvation = -22970.657898 eV Core-core repulsion = 19730.050430 eV Total energy + Delta-G solvation = -3240.607468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.10320 -38.39637 -36.66392 -34.12351 -33.69072 -31.15243 -30.92665 -30.38013 -28.96792 -26.67639 -23.74908 -22.95290 -22.79953 -22.16067 -20.54541 -20.13704 -18.95675 -17.90620 -16.33518 -16.29188 -15.25923 -15.12286 -14.79005 -14.42325 -14.28424 -14.08572 -13.67225 -13.50154 -13.38341 -13.20491 -12.91533 -12.73078 -12.38486 -12.24102 -11.77143 -11.35734 -11.31717 -11.12848 -10.87874 -10.80274 -10.68008 -10.57468 -10.54291 -10.34727 -10.17018 -9.99047 -9.82000 -9.54148 -8.86199 -8.56150 -8.07834 -6.62403 -5.81825 -3.33790 3.04777 3.34219 3.41763 3.43676 3.62952 4.21658 4.44539 4.53045 4.59988 4.77042 4.99048 5.09547 5.25215 5.30257 5.33477 5.34755 5.36296 5.46945 5.59267 5.74849 5.79487 5.83487 5.85488 5.88642 5.93869 5.94932 6.06311 6.13697 6.23274 6.28377 6.38705 6.45251 6.56477 6.73761 6.78469 6.90813 7.33033 7.40981 7.66873 7.74423 8.38028 8.41956 9.02700 9.15841 9.76190 10.35106 11.24644 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.046733 B = 0.003425 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.006207 B = 8173.667567 C = 8377.893956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.096 3.904 12 N -0.616 5.616 13 C 0.704 3.296 14 O -0.601 6.601 15 N -0.749 5.749 16 C 0.164 3.836 17 C -0.129 4.129 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.126 4.126 22 C 0.104 3.896 23 C 0.158 3.842 24 H 0.255 0.745 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.393 0.607 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.819 -19.788 2.348 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.029 4.029 12 N -0.352 5.352 13 C 0.406 3.594 14 O -0.481 6.481 15 N -0.407 5.407 16 C 0.058 3.942 17 C -0.168 4.168 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.165 4.165 22 C -0.020 4.020 23 C 0.032 3.968 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.229 0.771 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.966 -19.595 2.817 19.894 hybrid contribution 0.870 0.925 -0.380 1.326 sum 2.837 -18.670 2.437 19.041 Atomic orbital electron populations 1.69966 1.05312 1.25571 1.53800 1.25232 0.95439 0.98543 1.00181 0.86163 0.79220 0.83675 0.77319 1.20214 1.21620 1.21487 1.19223 0.90732 0.83656 1.45019 0.91621 1.43953 1.31715 1.03965 1.51784 1.21357 0.98355 0.87632 0.92244 1.22298 0.87631 0.99239 0.93727 1.47262 1.29913 1.07548 1.50467 1.15898 0.83148 0.80395 0.79969 1.90852 1.24160 1.85782 1.47286 1.45372 1.34224 1.05418 1.55658 1.20739 0.98321 0.81523 0.93572 1.21951 1.00013 0.96831 0.98038 1.21497 1.01022 0.94834 0.98127 1.21570 1.01076 0.98264 0.94912 1.21471 1.00480 0.96032 0.97320 1.21807 1.01153 0.95118 0.98384 1.22382 0.99412 0.83407 0.96761 1.21228 0.88348 0.97191 0.90025 0.93468 0.95975 0.91640 0.91801 0.92080 0.77113 0.89555 0.92122 0.91431 0.91730 0.91963 0.92048 0.92020 0.91638 0.91685 0.91283 0.91585 0.92597 0.90149 0.88129 0.95933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 11.01 55.49 0.61 -25.36 16 2 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 3 Si 0.91 21.31 29.57 -169.99 -5.03 16.28 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.26 -6.87 9.57 -15.06 -0.14 -7.01 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 N -0.59 -14.61 2.95 -171.77 -0.51 -15.12 16 10 C 0.13 2.64 6.70 -3.37 -0.02 2.62 16 11 C 0.10 1.59 6.58 -3.37 -0.02 1.57 16 12 N -0.62 -11.64 2.95 -177.94 -0.52 -12.17 16 13 C 0.70 13.08 8.26 -86.92 -0.72 12.36 16 14 O -0.60 -13.20 15.39 5.28 0.08 -13.12 16 15 N -0.75 -10.50 4.99 -58.67 -0.29 -10.79 16 16 C 0.16 1.99 2.50 -67.93 -0.17 1.82 16 17 C -0.13 -1.45 5.49 -26.73 -0.15 -1.59 16 18 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 19 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 20 C -0.11 -0.90 5.92 -26.73 -0.16 -1.06 16 21 C -0.13 -1.15 5.39 -26.74 -0.14 -1.29 16 22 C 0.10 2.19 6.59 -3.59 -0.02 2.16 16 23 C 0.16 3.87 5.45 -3.60 -0.02 3.85 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.79 5.61 -51.93 -0.29 0.49 16 29 H 0.39 4.65 6.07 -40.82 -0.25 4.40 16 30 H 0.09 1.25 7.51 -51.92 -0.39 0.86 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.71 7.00 -51.93 -0.36 1.34 16 43 H 0.10 2.70 6.03 -51.93 -0.31 2.38 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -31.43 337.86 -10.02 -41.45 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.48 Total: 2.53 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -1.97 Total: 11.19 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.71 Total: -63.43 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.43 -10.02 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070140932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.253 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds