Wall clock time and date at job start Tue Mar 31 2020 05:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48498 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47234 * 300.00331 * 3 2 1 6 6 H 1.48507 * 109.47026 * 59.99895 * 3 2 1 7 7 C 1.38812 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99739 * 169.96398 * 7 2 1 9 9 N 1.36933 * 120.00210 * 350.23869 * 7 2 1 10 10 C 1.46961 * 120.59311 * 147.66308 * 9 7 2 11 11 C 1.53807 * 108.39854 * 124.76194 * 10 9 7 12 12 N 1.46960 * 108.58070 * 49.63573 * 11 10 9 13 13 C 1.34777 * 120.59396 * 124.67361 * 12 11 10 14 14 O 1.21593 * 119.99770 * 185.15939 * 13 12 11 15 15 N 1.34771 * 120.00018 * 5.15448 * 13 12 11 16 16 C 1.46505 * 120.00021 * 175.01962 * 15 13 12 17 17 C 1.52992 * 109.47206 * 275.00237 * 16 15 13 18 18 C 1.53004 * 109.47360 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46962 * 59.99584 * 18 17 16 20 20 C 1.53002 * 109.47394 * 300.00311 * 19 18 17 21 21 C 1.52994 * 109.46995 * 59.99733 * 20 19 18 22 22 C 1.46970 * 118.81425 * 304.64909 * 12 11 10 23 23 C 1.46960 * 120.59378 * 327.94858 * 9 7 2 24 24 H 0.96995 * 120.00006 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.60924 * 244.54314 * 10 9 7 26 26 H 1.09004 * 109.61153 * 5.05217 * 10 9 7 27 27 H 1.09004 * 109.73826 * 289.84764 * 11 10 9 28 28 H 1.09000 * 109.67629 * 169.38946 * 11 10 9 29 29 H 0.96996 * 120.00109 * 355.01625 * 15 13 12 30 30 H 1.09008 * 109.46912 * 34.99858 * 16 15 13 31 31 H 1.09005 * 109.46970 * 300.00158 * 17 16 15 32 32 H 1.09003 * 109.47598 * 59.99462 * 17 16 15 33 33 H 1.09000 * 109.46475 * 299.99750 * 18 17 16 34 34 H 1.08998 * 109.46783 * 179.97438 * 18 17 16 35 35 H 1.09003 * 109.46773 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.46922 * 60.00556 * 19 18 17 37 37 H 1.09003 * 109.46491 * 300.00333 * 20 19 18 38 38 H 1.08991 * 109.47213 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47192 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47384 * 60.00575 * 21 20 19 41 41 H 1.08996 * 109.60642 * 295.48462 * 22 12 11 42 42 H 1.08997 * 109.75487 * 175.05394 * 22 12 11 43 43 H 1.09002 * 109.60937 * 354.94315 * 23 9 7 44 44 H 1.09001 * 109.61245 * 115.28406 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0779 -1.2092 -0.1635 9 7 1.3406 -2.3795 0.2000 10 6 1.7943 -3.6179 -0.4482 11 6 2.0196 -4.6812 0.6401 12 7 0.8306 -4.7278 1.5025 13 6 0.1714 -5.8866 1.6999 14 8 -0.8635 -5.8963 2.3382 15 7 0.6592 -7.0347 1.1896 16 6 0.0036 -8.3088 1.4949 17 6 0.5311 -8.8478 2.8260 18 6 -0.1531 -10.1787 3.1445 19 6 0.1467 -11.1853 2.0319 20 6 -0.3809 -10.6463 0.7007 21 6 0.3032 -9.3155 0.3823 22 6 0.3734 -3.4882 2.1463 23 6 0.1514 -2.4261 1.0623 24 1 -0.4850 0.8400 -0.0004 25 1 1.0346 -3.9635 -1.1492 26 1 2.7280 -3.4321 -0.9792 27 1 2.8937 -4.4184 1.2361 28 1 2.1730 -5.6552 0.1755 29 1 1.4442 -7.0174 0.6202 30 1 -1.0733 -8.1554 1.5662 31 1 1.6080 -9.0011 2.7547 32 1 0.3181 -8.1304 3.6186 33 1 -1.2299 -10.0257 3.2157 34 1 0.2232 -10.5628 4.0927 35 1 -0.3404 -12.1337 2.2591 36 1 1.2235 -11.3383 1.9608 37 1 -1.4578 -10.4934 0.7720 38 1 -0.1678 -11.3636 -0.0917 39 1 -0.0730 -8.9312 -0.5658 40 1 1.3801 -9.4683 0.3111 41 1 1.1303 -3.1406 2.8494 42 1 -0.5614 -3.6713 2.6760 43 1 -0.0001 -1.4530 1.5293 44 1 -0.7231 -2.6858 0.4658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070140932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:58 Heat of formation + Delta-G solvation = -34.475286 kcal Electronic energy + Delta-G solvation = -22971.493938 eV Core-core repulsion = 19730.050430 eV Total energy + Delta-G solvation = -3241.443508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47460 -39.45866 -38.26142 -35.69948 -35.09776 -33.04284 -31.97649 -31.66213 -30.10877 -28.42708 -25.52850 -24.52155 -23.59264 -23.29846 -22.09849 -21.05870 -20.39994 -19.40158 -18.12780 -17.53830 -16.82874 -16.49114 -16.29449 -15.47718 -15.46251 -15.33976 -15.15244 -15.03784 -14.97134 -14.70826 -14.14428 -13.77925 -13.40774 -13.35493 -13.09564 -13.03000 -12.73417 -12.46337 -12.33138 -12.13899 -12.03878 -12.02389 -11.89646 -11.67615 -11.51437 -11.35134 -11.19246 -11.03478 -10.62511 -10.15939 -9.61732 -8.59731 -7.86617 -5.42794 1.48152 1.49614 1.60031 1.68683 2.15296 2.50337 2.93850 3.29106 3.60032 3.75013 3.85674 4.04944 4.20974 4.23457 4.28001 4.32639 4.35863 4.47698 4.49222 4.58983 4.59671 4.66695 4.73047 4.81901 4.84687 4.92836 5.06491 5.12225 5.14521 5.23023 5.24150 5.24997 5.35738 5.41648 5.49480 5.53391 5.61916 5.64514 5.70421 6.06673 6.38465 7.02494 7.10956 7.58674 7.78440 8.33861 9.17789 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.046733 B = 0.003425 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.006207 B = 8173.667567 C = 8377.893956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.051 4.051 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.262 4.262 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.127 3.873 11 C 0.106 3.894 12 N -0.621 5.621 13 C 0.700 3.300 14 O -0.641 6.641 15 N -0.731 5.731 16 C 0.160 3.840 17 C -0.124 4.124 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.119 4.119 22 C 0.121 3.879 23 C 0.172 3.828 24 H 0.250 0.750 25 H 0.012 0.988 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.407 0.593 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.071 0.929 44 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -22.088 1.822 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.247 4.247 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.392 4.392 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.001 3.999 11 C -0.018 4.018 12 N -0.357 5.357 13 C 0.402 3.598 14 O -0.523 6.523 15 N -0.388 5.388 16 C 0.055 3.945 17 C -0.163 4.163 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.005 4.005 23 C 0.045 3.955 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.246 0.754 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 4.517 -21.963 2.263 22.536 hybrid contribution 0.072 1.573 -0.244 1.593 sum 4.590 -20.390 2.019 20.997 Atomic orbital electron populations 1.70146 1.06930 1.25891 1.55549 1.26029 0.96142 1.01906 1.00592 0.85115 0.78738 0.79432 0.76573 1.18506 1.22115 1.21898 1.19612 0.91343 0.84540 1.43689 0.90640 1.44205 1.31396 1.05150 1.52524 1.21561 0.98512 0.86659 0.93211 1.22311 0.86781 1.00251 0.92436 1.47252 1.30672 1.06962 1.50849 1.16084 0.82663 0.81207 0.79860 1.90827 1.26000 1.86426 1.49066 1.45278 1.34260 1.04641 1.54641 1.20921 0.96564 0.81316 0.95681 1.21886 1.01054 0.97117 0.96233 1.21498 1.00125 0.94201 0.99520 1.21554 1.01928 0.98079 0.93777 1.21495 0.99875 0.95653 0.98218 1.21781 1.02562 0.94598 0.96717 1.21967 0.99431 0.83556 0.95502 1.20890 0.87532 0.96791 0.90316 0.94062 0.97035 0.89966 0.90627 0.87665 0.75449 0.92587 0.90617 0.94663 0.92871 0.90982 0.90721 0.90865 0.92508 0.89705 0.91407 0.89578 0.91758 0.91059 0.91057 0.99405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.81 11.01 21.65 0.24 -55.57 16 2 C -0.05 -2.84 5.07 84.86 0.43 -2.41 16 3 Si 0.97 44.11 29.57 68.60 2.03 46.13 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.26 -13.94 9.57 84.03 0.80 -13.14 16 8 H 0.08 3.81 7.85 -2.91 -0.02 3.79 16 9 N -0.61 -30.20 2.95 -697.37 -2.06 -32.26 16 10 C 0.13 4.90 6.70 86.56 0.58 5.48 16 11 C 0.11 3.23 6.58 86.56 0.57 3.80 16 12 N -0.62 -23.00 2.95 -835.15 -2.46 -25.46 16 13 C 0.70 25.68 8.26 179.06 1.48 27.16 16 14 O -0.64 -28.80 15.39 -4.01 -0.06 -28.87 16 15 N -0.73 -19.16 4.99 -457.81 -2.28 -21.44 16 16 C 0.16 3.68 2.50 44.99 0.11 3.79 16 17 C -0.12 -2.61 5.49 30.59 0.17 -2.45 16 18 C -0.12 -1.90 5.92 30.60 0.18 -1.72 16 19 C -0.12 -1.39 5.92 30.59 0.18 -1.20 16 20 C -0.11 -1.46 5.92 30.59 0.18 -1.28 16 21 C -0.12 -1.81 5.39 30.59 0.16 -1.65 16 22 C 0.12 5.14 6.59 86.42 0.57 5.71 16 23 C 0.17 8.69 5.45 86.42 0.47 9.16 16 24 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.08 2.89 7.93 -2.38 -0.02 2.87 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.11 2.26 5.61 -2.39 -0.01 2.25 16 29 H 0.41 8.20 6.07 -92.71 -0.56 7.64 16 30 H 0.06 1.65 7.51 -2.38 -0.02 1.63 16 31 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 2.62 8.14 -2.39 -0.02 2.61 16 42 H 0.07 3.15 7.00 -2.39 -0.02 3.13 16 43 H 0.07 4.02 6.03 -2.39 -0.01 4.01 16 44 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 Total: -1.00 -70.66 337.86 1.71 -68.96 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.41 Total: 17.24 kcal Atomic # 6 Polarization: 25.38 SS G_CDS: 5.89 Total: 31.27 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -6.56 Total: -134.73 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.06 Total: -28.87 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.66 1.71 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070140932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.480 kcal (2) G-P(sol) polarization free energy of solvation -70.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds