Wall clock time and date at job start Tue Mar 31 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99996 * 2 1 4 4 C 1.53000 * 109.47220 * 180.63338 * 3 2 1 5 5 N 1.46899 * 109.47298 * 67.83368 * 4 3 2 6 6 C 1.46897 * 111.00073 * 284.98540 * 5 4 3 7 7 C 1.50707 * 109.47118 * 172.30190 * 6 5 4 8 8 H 1.08000 * 119.99913 * 354.46585 * 7 6 5 9 9 C 1.37880 * 119.99693 * 174.47206 * 7 6 5 10 10 N 1.31509 * 120.00306 * 353.72294 * 9 7 6 11 11 Si 1.86802 * 119.99499 * 173.72512 * 9 7 6 12 12 H 1.48506 * 109.46910 * 65.00634 * 11 9 7 13 13 H 1.48505 * 109.46899 * 184.99950 * 11 9 7 14 14 H 1.48500 * 109.47487 * 305.00141 * 11 9 7 15 15 C 1.46896 * 111.00472 * 161.02792 * 5 4 3 16 16 C 1.53005 * 109.47014 * 293.95900 * 15 5 4 17 17 N 1.46503 * 109.47138 * 179.97438 * 16 15 5 18 18 N 1.40082 * 126.03512 * 269.97166 * 17 16 15 19 19 C 1.30842 * 108.20298 * 180.02562 * 18 17 16 20 20 C 1.50699 * 125.89752 * 180.02562 * 19 18 17 21 21 C 1.39871 * 108.19957 * 359.77775 * 19 18 17 22 22 C 1.34947 * 126.03669 * 89.99851 * 17 16 15 23 23 C 1.50701 * 126.12600 * 359.94436 * 22 17 16 24 24 H 1.09002 * 109.46509 * 303.62873 * 1 2 3 25 25 H 1.08999 * 109.46986 * 63.62430 * 1 2 3 26 26 H 1.08996 * 109.47294 * 183.62992 * 1 2 3 27 27 H 1.08994 * 109.47175 * 60.63211 * 3 2 1 28 28 H 1.09006 * 109.47315 * 300.62951 * 3 2 1 29 29 H 1.09006 * 109.47067 * 307.84114 * 4 3 2 30 30 H 1.08997 * 109.47522 * 187.83735 * 4 3 2 31 31 H 1.09007 * 109.47156 * 292.29617 * 6 5 4 32 32 H 1.08997 * 109.47505 * 52.29909 * 6 5 4 33 33 H 0.96996 * 120.00004 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47477 * 173.95550 * 15 5 4 35 35 H 1.09003 * 109.47277 * 53.94918 * 15 5 4 36 36 H 1.08997 * 109.47284 * 59.99532 * 16 15 5 37 37 H 1.08998 * 109.47173 * 299.99709 * 16 15 5 38 38 H 1.09006 * 109.46762 * 89.97477 * 20 19 18 39 39 H 1.08997 * 109.46970 * 209.97385 * 20 19 18 40 40 H 1.08996 * 109.47043 * 329.97469 * 20 19 18 41 41 H 1.08005 * 126.03487 * 180.23272 * 21 19 18 42 42 H 1.08995 * 109.47342 * 90.00094 * 23 22 17 43 43 H 1.08999 * 109.47119 * 329.99837 * 23 22 17 44 44 H 1.09002 * 109.47228 * 209.99916 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0159 5 7 3.9693 0.6309 -1.3055 6 6 3.6951 -0.8104 -1.3785 7 6 3.9760 -1.3052 -2.7741 8 1 4.2370 -0.6042 -3.5532 9 6 3.8997 -2.6526 -3.0562 10 7 3.7040 -3.5177 -2.0852 11 14 4.0744 -3.2494 -4.8177 12 1 5.4451 -2.9535 -5.3069 13 1 3.8357 -4.7142 -4.8700 14 1 3.0817 -2.5550 -5.6764 15 6 5.3915 0.9090 -1.5462 16 6 5.5957 2.4165 -1.7101 17 7 7.0141 2.6940 -1.9496 18 7 7.9810 2.9491 -0.9686 19 6 9.1270 3.1506 -1.5668 20 6 10.4364 3.4583 -0.8873 21 6 8.9280 3.0254 -2.9456 22 6 7.6199 2.7495 -3.1542 23 6 6.9590 2.5362 -4.4917 24 1 -0.3632 0.5692 0.8557 25 1 -0.3633 0.4565 -0.9207 26 1 -0.3633 -1.0255 0.0651 27 1 1.6977 1.8423 0.8955 28 1 1.6797 1.8503 -0.8843 29 1 3.8560 0.5238 0.7895 30 1 3.9794 2.1702 0.1241 31 1 4.3342 -1.3382 -0.6705 32 1 2.6496 -0.9944 -1.1314 33 1 3.6507 -4.4657 -2.2836 34 1 5.7132 0.3980 -2.4536 35 1 5.9797 0.5527 -0.7005 36 1 5.2739 2.9276 -0.8027 37 1 5.0076 2.7730 -2.5558 38 1 10.9584 2.5273 -0.6659 39 1 11.0516 4.0722 -1.5450 40 1 10.2463 3.9977 0.0405 41 1 9.6845 3.1323 -3.7091 42 1 6.5925 3.4897 -4.8720 43 1 6.1239 1.8451 -4.3782 44 1 7.6828 2.1197 -5.1922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:50 Heat of formation + Delta-G solvation = 31.537718 kcal Electronic energy + Delta-G solvation = -22602.831877 eV Core-core repulsion = 19364.250908 eV Total energy + Delta-G solvation = -3238.580969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05165 -37.99770 -36.37962 -33.92159 -32.57253 -31.82796 -30.21813 -29.26755 -27.24995 -26.76773 -26.04871 -25.10702 -22.58699 -22.22509 -20.17162 -19.86558 -18.99923 -16.72401 -16.22742 -15.86854 -15.74439 -15.11145 -14.98374 -14.51631 -14.20780 -13.88540 -13.65842 -13.40322 -13.24859 -13.04061 -12.69546 -12.55751 -12.49573 -12.24390 -11.92417 -11.89542 -11.65884 -11.33565 -11.15540 -11.01576 -10.79706 -10.72659 -10.41687 -10.39869 -10.22223 -9.85620 -9.29445 -8.87344 -8.79947 -8.37155 -8.22997 -7.31512 -5.96569 -3.96471 2.09993 2.73725 2.96236 3.33817 3.38843 3.40958 4.27652 4.44843 4.67848 4.79040 4.92254 5.16972 5.29157 5.37677 5.40508 5.46567 5.48457 5.59671 5.61863 5.64517 5.68121 5.71908 5.75748 5.77363 5.88667 5.91688 5.97497 6.00669 6.03488 6.10939 6.24526 6.38977 6.46093 6.62818 6.91702 7.27235 7.44663 7.51476 7.67036 7.82188 8.00233 8.19629 8.27137 8.58133 9.10183 9.65206 11.13891 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012259 B = 0.005353 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.549065 B = 5229.587341 C = 6820.850322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.071 3.929 4 C 0.047 3.953 5 N -0.530 5.530 6 C 0.185 3.815 7 C -0.510 4.510 8 H 0.058 0.942 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.891 3.109 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.050 3.950 16 C 0.131 3.869 17 N -0.358 5.358 18 N -0.299 5.299 19 C 0.063 3.937 20 C -0.068 4.068 21 C -0.284 4.284 22 C 0.094 3.906 23 C -0.098 4.098 24 H 0.030 0.970 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.072 0.928 31 H -0.008 1.008 32 H 0.068 0.932 33 H 0.260 0.740 34 H 0.092 0.908 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.141 0.859 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 13.963 0.443 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.006 4.006 4 C -0.081 4.081 5 N -0.255 5.255 6 C 0.060 3.940 7 C -0.549 4.549 8 H 0.076 0.924 9 C -0.144 4.144 10 N -0.533 5.533 11 Si 0.719 3.281 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.079 4.079 16 C 0.009 3.991 17 N -0.140 5.140 18 N -0.122 5.122 19 C -0.102 4.102 20 C -0.127 4.127 21 C -0.313 4.313 22 C -0.035 4.035 23 C -0.156 4.156 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.010 0.990 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.159 0.841 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.847 13.724 1.261 14.073 hybrid contribution 0.695 -0.667 -1.056 1.430 sum 3.542 13.057 0.205 13.530 Atomic orbital electron populations 1.22657 0.82560 1.02259 0.98966 1.88163 1.18451 1.27086 1.94923 1.22495 0.93884 0.85228 0.99022 1.22179 0.93676 0.99353 0.92934 1.62200 1.14694 1.20412 1.28221 1.20101 0.98743 0.78686 0.96421 1.21117 1.46804 0.91765 0.95183 0.92356 1.24940 0.95686 0.96787 0.96940 1.69968 1.50102 1.01983 1.31265 0.86673 0.78460 0.77576 0.85352 1.20497 1.21381 1.20136 1.22277 0.90880 0.92203 1.02574 1.21916 0.74849 0.98729 1.03569 1.48621 1.08518 1.53698 1.03212 1.77274 0.97195 1.23929 1.13848 1.22226 0.94778 1.00136 0.93091 1.20111 0.90668 1.01981 0.99937 1.21023 0.95616 1.18655 0.96012 1.21132 0.93401 0.99969 0.88972 1.20509 1.01459 1.02893 0.90727 0.95152 0.94435 0.90060 0.94232 0.92836 0.94453 0.90945 0.99042 0.91422 0.93003 0.89000 0.95328 0.89474 0.88417 0.90815 0.90813 0.91288 0.84079 0.90470 0.90045 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.12 7.79 -35.23 -0.27 -7.40 16 3 C 0.07 1.16 6.23 37.16 0.23 1.39 16 4 C 0.05 0.84 5.39 -3.82 -0.02 0.82 16 5 N -0.53 -11.12 4.45 -236.07 -1.05 -12.17 16 6 C 0.18 4.84 4.51 -4.97 -0.02 4.82 16 7 C -0.51 -14.23 8.22 -34.44 -0.28 -14.51 16 8 H 0.06 1.58 7.25 -52.49 -0.38 1.20 16 9 C 0.06 1.65 5.45 -17.82 -0.10 1.55 16 10 N -0.89 -26.92 13.28 55.43 0.74 -26.18 16 11 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.05 0.99 5.13 -3.82 -0.02 0.97 16 16 C 0.13 2.09 6.03 -4.04 -0.02 2.06 16 17 N -0.36 -5.99 3.61 -57.14 -0.21 -6.20 16 18 N -0.30 -5.25 12.58 33.67 0.42 -4.82 16 19 C 0.06 0.95 7.22 -82.40 -0.59 0.36 16 20 C -0.07 -0.73 10.45 36.01 0.38 -0.36 16 21 C -0.28 -4.07 10.65 -40.01 -0.43 -4.50 16 22 C 0.09 1.41 6.93 -82.27 -0.57 0.84 16 23 C -0.10 -1.18 9.90 36.01 0.36 -0.82 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.72 8.01 -51.93 -0.42 0.31 16 30 H 0.07 1.08 5.89 -51.93 -0.31 0.78 16 31 H -0.01 -0.25 8.11 -51.92 -0.42 -0.67 16 32 H 0.07 1.89 5.14 -51.93 -0.27 1.62 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.09 2.01 6.59 -51.93 -0.34 1.67 16 35 H 0.03 0.62 8.12 -51.93 -0.42 0.19 16 36 H 0.09 1.31 6.25 -51.93 -0.32 0.98 16 37 H 0.10 1.42 7.66 -51.93 -0.40 1.02 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.09 7.72 -51.93 -0.40 0.69 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -32.99 358.22 -7.44 -40.43 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.46 Total: 0.10 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 0.02 Total: -5.79 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.10 Total: -49.37 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.27 Total: -7.40 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.99 -7.44 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.971 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds