Wall clock time and date at job start Tue Mar 31 2020 05:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99996 * 2 1 4 4 C 1.53000 * 109.47220 * 180.63338 * 3 2 1 5 5 N 1.46899 * 109.47298 * 67.83368 * 4 3 2 6 6 C 1.46897 * 111.00073 * 284.98540 * 5 4 3 7 7 C 1.50707 * 109.47118 * 172.30190 * 6 5 4 8 8 H 1.08000 * 119.99913 * 354.46585 * 7 6 5 9 9 C 1.37880 * 119.99693 * 174.47206 * 7 6 5 10 10 N 1.31509 * 120.00306 * 353.72294 * 9 7 6 11 11 Si 1.86802 * 119.99499 * 173.72512 * 9 7 6 12 12 H 1.48506 * 109.46910 * 65.00634 * 11 9 7 13 13 H 1.48505 * 109.46899 * 184.99950 * 11 9 7 14 14 H 1.48500 * 109.47487 * 305.00141 * 11 9 7 15 15 C 1.46896 * 111.00472 * 161.02792 * 5 4 3 16 16 C 1.53005 * 109.47014 * 293.95900 * 15 5 4 17 17 N 1.46503 * 109.47138 * 179.97438 * 16 15 5 18 18 N 1.40082 * 126.03512 * 269.97166 * 17 16 15 19 19 C 1.30842 * 108.20298 * 180.02562 * 18 17 16 20 20 C 1.50699 * 125.89752 * 180.02562 * 19 18 17 21 21 C 1.39871 * 108.19957 * 359.77775 * 19 18 17 22 22 C 1.34947 * 126.03669 * 89.99851 * 17 16 15 23 23 C 1.50701 * 126.12600 * 359.94436 * 22 17 16 24 24 H 1.09002 * 109.46509 * 303.62873 * 1 2 3 25 25 H 1.08999 * 109.46986 * 63.62430 * 1 2 3 26 26 H 1.08996 * 109.47294 * 183.62992 * 1 2 3 27 27 H 1.08994 * 109.47175 * 60.63211 * 3 2 1 28 28 H 1.09006 * 109.47315 * 300.62951 * 3 2 1 29 29 H 1.09006 * 109.47067 * 307.84114 * 4 3 2 30 30 H 1.08997 * 109.47522 * 187.83735 * 4 3 2 31 31 H 1.09007 * 109.47156 * 292.29617 * 6 5 4 32 32 H 1.08997 * 109.47505 * 52.29909 * 6 5 4 33 33 H 0.96996 * 120.00004 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47477 * 173.95550 * 15 5 4 35 35 H 1.09003 * 109.47277 * 53.94918 * 15 5 4 36 36 H 1.08997 * 109.47284 * 59.99532 * 16 15 5 37 37 H 1.08998 * 109.47173 * 299.99709 * 16 15 5 38 38 H 1.09006 * 109.46762 * 89.97477 * 20 19 18 39 39 H 1.08997 * 109.46970 * 209.97385 * 20 19 18 40 40 H 1.08996 * 109.47043 * 329.97469 * 20 19 18 41 41 H 1.08005 * 126.03487 * 180.23272 * 21 19 18 42 42 H 1.08995 * 109.47342 * 90.00094 * 23 22 17 43 43 H 1.08999 * 109.47119 * 329.99837 * 23 22 17 44 44 H 1.09002 * 109.47228 * 209.99916 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0159 5 7 3.9693 0.6309 -1.3055 6 6 3.6951 -0.8104 -1.3785 7 6 3.9760 -1.3052 -2.7741 8 1 4.2370 -0.6042 -3.5532 9 6 3.8997 -2.6526 -3.0562 10 7 3.7040 -3.5177 -2.0852 11 14 4.0744 -3.2494 -4.8177 12 1 5.4451 -2.9535 -5.3069 13 1 3.8357 -4.7142 -4.8700 14 1 3.0817 -2.5550 -5.6764 15 6 5.3915 0.9090 -1.5462 16 6 5.5957 2.4165 -1.7101 17 7 7.0141 2.6940 -1.9496 18 7 7.9810 2.9491 -0.9686 19 6 9.1270 3.1506 -1.5668 20 6 10.4364 3.4583 -0.8873 21 6 8.9280 3.0254 -2.9456 22 6 7.6199 2.7495 -3.1542 23 6 6.9590 2.5362 -4.4917 24 1 -0.3632 0.5692 0.8557 25 1 -0.3633 0.4565 -0.9207 26 1 -0.3633 -1.0255 0.0651 27 1 1.6977 1.8423 0.8955 28 1 1.6797 1.8503 -0.8843 29 1 3.8560 0.5238 0.7895 30 1 3.9794 2.1702 0.1241 31 1 4.3342 -1.3382 -0.6705 32 1 2.6496 -0.9944 -1.1314 33 1 3.6507 -4.4657 -2.2836 34 1 5.7132 0.3980 -2.4536 35 1 5.9797 0.5527 -0.7005 36 1 5.2739 2.9276 -0.8027 37 1 5.0076 2.7730 -2.5558 38 1 10.9584 2.5273 -0.6659 39 1 11.0516 4.0722 -1.5450 40 1 10.2463 3.9977 0.0405 41 1 9.6845 3.1323 -3.7091 42 1 6.5925 3.4897 -4.8720 43 1 6.1239 1.8451 -4.3782 44 1 7.6828 2.1197 -5.1922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072690155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:49 Heat of formation + Delta-G solvation = 9.010358 kcal Electronic energy + Delta-G solvation = -22603.808737 eV Core-core repulsion = 19364.250908 eV Total energy + Delta-G solvation = -3239.557829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.20426 -39.50517 -37.88384 -35.27971 -34.55454 -32.98928 -31.44753 -30.82101 -28.79139 -27.86507 -27.32476 -26.70583 -24.16021 -23.87985 -21.52853 -21.30507 -20.15810 -18.60333 -17.69453 -17.25755 -17.19170 -16.70374 -16.34253 -16.18136 -15.51610 -15.27306 -15.06450 -14.59440 -14.58015 -14.10502 -13.98680 -13.94138 -13.71976 -13.63119 -13.28663 -13.19654 -12.86230 -12.73389 -12.68387 -12.56270 -12.49664 -12.35096 -12.12855 -11.95012 -11.75842 -11.41280 -11.10858 -10.62507 -10.32804 -9.99132 -9.40426 -9.14308 -8.15672 -6.23919 0.92941 1.39797 1.43232 1.51055 1.56141 1.86859 2.41482 2.99652 3.18078 3.23992 3.60080 3.78850 3.93426 4.03008 4.17160 4.22626 4.28233 4.36272 4.48448 4.56072 4.57591 4.61298 4.66276 4.68689 4.72906 4.79684 4.84375 4.87660 4.89613 4.95416 5.01917 5.06766 5.14894 5.30332 5.38119 5.55402 5.66457 5.84462 6.11618 6.15079 6.25429 6.45778 6.61130 6.84549 6.92100 7.43195 8.95361 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012259 B = 0.005353 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.549065 B = 5229.587341 C = 6820.850322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.071 3.929 4 C 0.044 3.956 5 N -0.524 5.524 6 C 0.202 3.798 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.963 3.037 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.263 1.263 15 C 0.062 3.938 16 C 0.146 3.854 17 N -0.376 5.376 18 N -0.343 5.343 19 C 0.058 3.942 20 C -0.067 4.067 21 C -0.291 4.291 22 C 0.082 3.918 23 C -0.094 4.094 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.014 0.986 30 H 0.107 0.893 31 H -0.057 1.057 32 H 0.053 0.947 33 H 0.261 0.739 34 H 0.065 0.935 35 H -0.001 1.001 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.169 0.831 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 16.013 -1.154 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.333 6.333 3 C -0.005 4.005 4 C -0.084 4.084 5 N -0.249 5.249 6 C 0.076 3.924 7 C -0.560 4.560 8 H 0.082 0.918 9 C -0.196 4.196 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.187 1.187 15 C -0.067 4.067 16 C 0.025 3.975 17 N -0.159 5.159 18 N -0.166 5.166 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.319 4.319 22 C -0.046 4.046 23 C -0.152 4.152 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.033 0.967 30 H 0.125 0.875 31 H -0.040 1.040 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.018 0.982 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.186 0.814 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.224 15.810 -0.338 16.139 hybrid contribution 0.632 -1.267 -0.499 1.501 sum 3.856 14.543 -0.837 15.069 Atomic orbital electron populations 1.22802 0.80483 1.02736 1.00678 1.88079 1.20916 1.29035 1.95277 1.22603 0.92256 0.84551 1.01118 1.22376 0.95505 1.00135 0.90349 1.62131 1.15379 1.17010 1.30334 1.19726 0.96698 0.81394 0.94605 1.21461 1.46376 0.92245 0.95924 0.91837 1.25882 0.95243 0.96983 1.01540 1.70127 1.51356 1.02273 1.33763 0.85532 0.79006 0.76944 0.79730 1.19495 1.21180 1.18745 1.22118 0.89580 0.95088 0.99929 1.21690 0.75575 0.95304 1.04950 1.48665 1.08520 1.54882 1.03816 1.77226 0.98355 1.25914 1.15123 1.22976 0.95415 0.98509 0.93837 1.20268 0.89026 1.02843 1.00406 1.21447 0.95965 1.18093 0.96430 1.21748 0.94045 0.99301 0.89463 1.20596 1.01144 1.03858 0.89637 0.92138 0.93696 0.90532 0.90617 0.92012 0.96743 0.87538 1.03958 0.92944 0.92998 0.91629 0.98242 0.88354 0.86511 0.90109 0.88099 0.91004 0.81391 0.88054 0.91720 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.41 -16.14 7.79 -148.98 -1.16 -17.30 16 3 C 0.07 2.25 6.23 71.98 0.45 2.70 16 4 C 0.04 1.58 5.39 86.30 0.47 2.05 16 5 N -0.52 -22.53 4.45 -900.78 -4.01 -26.54 16 6 C 0.20 11.08 4.51 85.56 0.39 11.47 16 7 C -0.52 -29.90 8.22 25.60 0.21 -29.68 16 8 H 0.06 3.49 7.25 -2.91 -0.02 3.47 16 9 C 0.00 0.07 5.45 84.66 0.46 0.53 16 10 N -0.93 -58.18 13.28 21.45 0.28 -57.89 16 11 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 15 C 0.06 2.54 5.13 86.31 0.44 2.98 16 16 C 0.15 4.59 6.03 86.38 0.52 5.11 16 17 N -0.38 -12.39 3.61 -334.69 -1.21 -13.60 16 18 N -0.34 -11.91 12.58 -47.38 -0.60 -12.51 16 19 C 0.06 1.68 7.22 43.10 0.31 1.99 16 20 C -0.07 -1.30 10.45 71.24 0.74 -0.56 16 21 C -0.29 -7.77 10.65 21.99 0.23 -7.54 16 22 C 0.08 2.36 6.93 41.40 0.29 2.64 16 23 C -0.09 -2.09 9.90 71.24 0.71 -1.39 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.01 0.58 8.01 -2.38 -0.02 0.56 16 30 H 0.11 3.03 5.89 -2.39 -0.01 3.02 16 31 H -0.06 -3.64 8.11 -2.38 -0.02 -3.66 16 32 H 0.05 3.07 5.14 -2.39 -0.01 3.06 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.07 2.99 6.59 -2.39 -0.02 2.98 16 35 H 0.00 -0.03 8.12 -2.39 -0.02 -0.05 16 36 H 0.10 2.83 6.25 -2.39 -0.01 2.82 16 37 H 0.12 3.21 7.66 -2.39 -0.02 3.19 16 38 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 42 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.66 7.72 -2.39 -0.02 1.64 16 44 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -74.94 358.22 2.76 -72.18 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.96 Total: 16.50 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 6.47 Total: -7.60 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -5.53 Total: -110.54 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -1.16 Total: -17.30 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -74.94 2.76 -72.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.187 kcal (2) G-P(sol) polarization free energy of solvation -74.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds