Wall clock time and date at job start Tue Mar 31 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99823 * 2 1 4 4 C 1.53002 * 109.46920 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47076 * 66.40249 * 4 3 2 6 6 C 1.46901 * 110.99362 * 286.90721 * 5 4 3 7 7 C 1.50697 * 109.47343 * 299.67553 * 6 5 4 8 8 H 1.07997 * 119.99713 * 4.76276 * 7 6 5 9 9 C 1.37878 * 120.00123 * 184.76199 * 7 6 5 10 10 N 1.31510 * 120.00212 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99916 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46974 * 90.00161 * 11 9 7 13 13 H 1.48493 * 109.47322 * 210.00047 * 11 9 7 14 14 H 1.48500 * 109.47389 * 330.00152 * 11 9 7 15 15 C 1.46891 * 110.99945 * 162.95565 * 5 4 3 16 16 C 1.53007 * 109.46856 * 189.99603 * 15 5 4 17 17 C 1.53007 * 109.46879 * 179.97438 * 16 15 5 18 18 C 1.50701 * 109.46668 * 179.97438 * 17 16 15 19 19 C 1.39868 * 126.04016 * 90.02672 * 18 17 16 20 20 N 1.30834 * 108.20509 * 179.97438 * 19 18 17 21 21 N 1.40080 * 108.20410 * 0.02562 * 20 19 18 22 22 C 1.46499 * 126.03857 * 179.97438 * 21 20 19 23 23 C 1.34950 * 107.92597 * 359.75416 * 21 20 19 24 24 H 1.08993 * 109.46810 * 299.99525 * 1 2 3 25 25 H 1.08995 * 109.47160 * 59.99804 * 1 2 3 26 26 H 1.08999 * 109.46825 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47107 * 60.00010 * 3 2 1 28 28 H 1.08999 * 109.47667 * 300.00164 * 3 2 1 29 29 H 1.08992 * 109.47693 * 306.39645 * 4 3 2 30 30 H 1.09001 * 109.47140 * 186.39461 * 4 3 2 31 31 H 1.09000 * 109.47087 * 59.67764 * 6 5 4 32 32 H 1.08999 * 109.46916 * 179.67172 * 6 5 4 33 33 H 0.96999 * 120.00179 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47560 * 69.99884 * 15 5 4 35 35 H 1.08995 * 109.47422 * 309.99175 * 15 5 4 36 36 H 1.08990 * 109.46999 * 60.00209 * 16 15 5 37 37 H 1.08996 * 109.47267 * 300.00089 * 16 15 5 38 38 H 1.08996 * 109.47266 * 300.00117 * 17 16 15 39 39 H 1.08996 * 109.46862 * 59.99936 * 17 16 15 40 40 H 1.08007 * 125.89582 * 359.97438 * 19 18 17 41 41 H 1.09002 * 109.46874 * 89.97540 * 22 21 20 42 42 H 1.09000 * 109.47708 * 209.97155 * 22 21 20 43 43 H 1.09003 * 109.47216 * 329.98024 * 22 21 20 44 44 H 1.08001 * 126.12859 * 180.23563 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9804 0.5930 -1.2683 6 6 3.6655 -0.8409 -1.3194 7 6 4.3682 -1.5501 -0.1905 8 1 4.9239 -0.9823 0.5410 9 6 4.3016 -2.9237 -0.0916 10 7 4.9143 -3.5426 0.8938 11 14 3.3397 -3.9056 -1.3566 12 1 4.2365 -4.2784 -2.4800 13 1 2.8018 -5.1363 -0.7233 14 1 2.2163 -3.0827 -1.8722 15 6 5.4148 0.8251 -1.4830 16 6 5.7888 0.4210 -2.9106 17 6 7.2828 0.6633 -3.1344 18 6 7.6512 0.2648 -4.5403 19 6 7.6292 1.0971 -5.6641 20 7 8.0132 0.3959 -6.6997 21 7 8.2915 -0.9071 -6.2671 22 6 8.7509 -2.0149 -7.1084 23 6 8.0665 -0.9602 -4.9376 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8493 0.5483 0.8280 30 1 3.9783 2.1741 0.1151 31 1 2.5889 -0.9803 -1.2218 32 1 4.0003 -1.2527 -2.2715 33 1 4.8678 -4.5089 0.9631 34 1 5.9895 0.2287 -0.7743 35 1 5.6383 1.8814 -1.3341 36 1 5.2142 1.0174 -3.6192 37 1 5.5653 -0.6353 -3.0596 38 1 7.5059 1.7198 -2.9855 39 1 7.8577 0.0673 -2.4257 40 1 7.3444 2.1389 -5.6751 41 1 9.8405 -2.0213 -7.1377 42 1 8.3931 -2.9579 -6.6950 43 1 8.3610 -1.8899 -8.1187 44 1 8.1930 -1.8260 -4.3045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:23 Heat of formation + Delta-G solvation = 37.214814 kcal Electronic energy + Delta-G solvation = -22433.236905 eV Core-core repulsion = 19194.902113 eV Total energy + Delta-G solvation = -3238.334792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04202 -37.92743 -36.38677 -34.16983 -32.60696 -32.16643 -30.06129 -28.91232 -27.52487 -26.50201 -25.50183 -23.91633 -22.60404 -20.99549 -20.96479 -19.81240 -19.20369 -16.89426 -16.68399 -15.95512 -15.57521 -15.36403 -14.71158 -14.56316 -14.32615 -14.03294 -13.89114 -13.59838 -13.31974 -12.90546 -12.69640 -12.48270 -12.30081 -12.02059 -11.69765 -11.49004 -11.30607 -11.14396 -10.98496 -10.73889 -10.62152 -10.44851 -10.22345 -10.03788 -9.76678 -9.64724 -9.32855 -9.30461 -8.95349 -8.38161 -8.15181 -7.04027 -5.95622 -3.89878 2.00122 2.60852 2.96017 3.35159 3.43003 3.51727 4.43446 4.53714 4.55067 4.97594 5.00831 5.04346 5.19095 5.28476 5.40989 5.47330 5.60158 5.60644 5.71086 5.83686 5.87118 5.89714 5.97005 5.98245 6.05455 6.12906 6.17830 6.31137 6.35361 6.46371 6.58316 6.80971 6.82883 6.96653 7.04184 7.11618 7.15414 7.55437 7.77273 7.79789 7.83729 8.22784 8.31421 8.61258 9.07376 9.70025 11.18080 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.004694 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.406222 B = 5963.854283 C = 6971.035835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.072 3.928 4 C 0.054 3.946 5 N -0.534 5.534 6 C 0.144 3.856 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.071 3.929 10 N -0.907 5.907 11 Si 0.874 3.126 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.262 1.262 15 C 0.059 3.941 16 C -0.103 4.103 17 C -0.039 4.039 18 C -0.222 4.222 19 C 0.051 3.949 20 N -0.307 5.307 21 N -0.382 5.382 22 C 0.104 3.896 23 C 0.054 3.946 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.018 0.982 33 H 0.259 0.741 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.180 0.820 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 7.482 -9.681 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.276 6.276 3 C -0.005 4.005 4 C -0.074 4.074 5 N -0.257 5.257 6 C 0.018 3.982 7 C -0.566 4.566 8 H 0.088 0.912 9 C -0.130 4.130 10 N -0.547 5.547 11 Si 0.702 3.298 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.187 1.187 15 C -0.070 4.070 16 C -0.141 4.141 17 C -0.079 4.079 18 C -0.234 4.234 19 C -0.135 4.135 20 N -0.129 5.129 21 N -0.165 5.165 22 C -0.038 4.038 23 C -0.092 4.092 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.197 0.803 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.427 7.249 -11.350 13.684 hybrid contribution -0.397 -1.027 0.973 1.470 sum 2.030 6.222 -10.376 12.268 Atomic orbital electron populations 1.22664 0.83437 1.02029 0.98756 1.88285 1.17502 1.27067 1.94793 1.22505 0.94611 0.84912 0.98472 1.22016 0.92611 0.98623 0.94159 1.62498 1.14868 1.17205 1.31154 1.20467 0.98614 0.83426 0.95679 1.21598 1.31622 0.92170 1.11178 0.91159 1.24866 0.95015 0.97833 0.95290 1.69931 1.44261 1.08811 1.31729 0.86862 0.81363 0.79698 0.81865 1.20758 1.21709 1.18662 1.21950 0.90030 0.98564 0.96419 1.21496 0.93707 1.02230 0.96666 1.19886 0.96803 1.00793 0.90382 1.20204 1.12165 0.93420 0.97575 1.23778 0.99453 1.00141 0.90134 1.77257 1.22792 0.89176 1.23645 1.48388 1.52762 1.09010 1.06368 1.21794 1.00138 0.86248 0.95591 1.22431 1.01412 1.00140 0.85188 0.95048 0.94911 0.90356 0.94412 0.93676 0.91917 0.91720 0.92387 0.96441 0.93100 0.93417 0.93245 0.92415 0.91575 0.91691 0.91410 0.80257 0.91082 0.89534 0.89595 0.80932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.36 -7.24 7.69 -35.23 -0.27 -7.51 16 3 C 0.07 1.25 6.24 37.16 0.23 1.49 16 4 C 0.05 1.04 5.36 -3.82 -0.02 1.02 16 5 N -0.53 -11.06 4.66 -236.08 -1.10 -12.16 16 6 C 0.14 3.52 3.64 -4.98 -0.02 3.50 16 7 C -0.53 -14.66 7.88 -34.44 -0.27 -14.93 16 8 H 0.07 2.12 6.21 -52.49 -0.33 1.80 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 10 N -0.91 -27.91 13.96 55.43 0.77 -27.14 16 11 Si 0.87 22.10 27.38 -169.99 -4.65 17.45 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.26 -6.49 6.68 56.52 0.38 -6.12 16 15 C 0.06 1.10 4.78 -3.83 -0.02 1.08 16 16 C -0.10 -1.76 5.13 -26.72 -0.14 -1.90 16 17 C -0.04 -0.57 5.70 -27.88 -0.16 -0.73 16 18 C -0.22 -3.21 5.35 -105.05 -0.56 -3.77 16 19 C 0.05 0.71 11.96 -17.37 -0.21 0.50 16 20 N -0.31 -4.60 12.58 30.63 0.39 -4.22 16 21 N -0.38 -5.12 4.01 -68.16 -0.27 -5.39 16 22 C 0.10 0.91 11.47 59.85 0.69 1.60 16 23 C 0.05 0.74 11.40 -17.22 -0.20 0.55 16 24 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.41 6.09 -51.93 -0.32 1.09 16 30 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 31 H 0.06 1.49 4.73 -51.93 -0.25 1.25 16 32 H 0.02 0.44 5.48 -51.93 -0.28 0.15 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.05 1.02 6.64 -51.93 -0.34 0.67 16 35 H 0.05 0.80 7.85 -51.93 -0.41 0.40 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.31 6.48 -51.93 -0.34 0.97 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.18 1.99 8.06 -52.48 -0.42 1.57 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -33.86 351.80 -6.82 -40.67 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.32 Total: 1.10 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 0.34 Total: -8.10 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.21 Total: -48.91 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.27 Total: -7.51 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.65 Total: 17.45 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.86 -6.82 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.887 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds