Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46771 * 2 1 4 4 N 1.30272 * 126.28445 * 90.03086 * 3 2 1 5 5 N 1.28658 * 109.38239 * 179.97438 * 4 3 2 6 6 C 1.30273 * 109.38261 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.27822 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47421 * 90.02646 * 7 6 5 9 9 C 1.46902 * 111.00231 * 66.03866 * 8 7 6 10 10 C 1.50706 * 109.46942 * 62.69379 * 9 8 7 11 11 H 1.08001 * 119.99859 * 4.89228 * 10 9 8 12 12 C 1.37874 * 120.00030 * 184.89761 * 10 9 8 13 13 N 1.31509 * 120.00066 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99898 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47397 * 359.97438 * 14 12 10 16 16 H 1.48509 * 109.47003 * 119.99771 * 14 12 10 17 17 H 1.48499 * 109.47334 * 239.99392 * 14 12 10 18 18 C 1.46894 * 111.00086 * 189.99636 * 8 7 6 19 19 C 1.53009 * 109.47288 * 163.65740 * 18 8 7 20 20 C 1.52999 * 109.47053 * 181.33148 * 19 18 8 21 21 C 1.53002 * 109.46752 * 174.99959 * 20 19 18 22 22 C 1.53003 * 109.46812 * 294.99574 * 20 19 18 23 23 O 1.34360 * 107.43440 * 359.76001 * 6 5 4 24 24 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47437 * 59.99979 * 1 2 3 26 26 H 1.08997 * 109.47686 * 299.99695 * 1 2 3 27 27 H 1.08997 * 109.46938 * 119.99899 * 2 1 3 28 28 H 1.09004 * 109.46841 * 240.00376 * 2 1 3 29 29 H 1.09003 * 109.46473 * 210.02440 * 7 6 5 30 30 H 1.08995 * 109.47291 * 330.01701 * 7 6 5 31 31 H 1.09002 * 109.47413 * 182.68807 * 9 8 7 32 32 H 1.09000 * 109.47113 * 302.69508 * 9 8 7 33 33 H 0.97002 * 120.00106 * 180.02562 * 13 12 10 34 34 H 1.09005 * 109.47460 * 283.65456 * 18 8 7 35 35 H 1.08994 * 109.47281 * 43.65703 * 18 8 7 36 36 H 1.08998 * 109.46690 * 301.32654 * 19 18 8 37 37 H 1.09000 * 109.47043 * 61.32437 * 19 18 8 38 38 H 1.08996 * 109.47472 * 55.00025 * 20 19 18 39 39 H 1.08996 * 109.47078 * 59.99825 * 21 20 19 40 40 H 1.09004 * 109.46884 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47182 * 299.99588 * 21 20 19 42 42 H 1.09004 * 109.46860 * 180.02562 * 22 20 19 43 43 H 1.09002 * 109.47350 * 300.00042 * 22 20 19 44 44 H 1.08993 * 109.46982 * 60.00465 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2897 2.1475 1.0501 5 7 2.7003 3.3080 0.6761 6 6 2.7193 3.3611 -0.6255 7 6 3.1376 4.5416 -1.4638 8 7 4.5788 4.4624 -1.7365 9 6 4.8914 3.3037 -2.5837 10 6 4.2105 3.4595 -3.9191 11 1 3.6715 4.3670 -4.1478 12 6 4.2756 2.4434 -4.8488 13 7 4.9323 1.3386 -4.5705 14 14 3.4310 2.6363 -6.5037 15 1 2.7649 3.9620 -6.5681 16 1 4.4397 2.5355 -7.5890 17 1 2.4166 1.5646 -6.6697 18 6 5.0686 5.7066 -2.3446 19 6 6.5944 5.7583 -2.2420 20 6 7.1020 7.0693 -2.8455 21 6 8.6131 7.1778 -2.6316 22 6 6.7962 7.0927 -4.3445 23 8 2.3031 2.1684 -1.0831 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 2.5885 4.5312 -2.4053 30 1 2.9196 5.4644 -0.9263 31 1 5.9697 3.2414 -2.7308 32 1 4.5376 2.3935 -2.0994 33 1 4.9784 0.6239 -5.2247 34 1 4.7738 5.7391 -3.3935 35 1 4.6401 6.5606 -1.8202 36 1 6.8901 5.7021 -1.1944 37 1 7.0238 4.9172 -2.7863 38 1 6.6051 7.9092 -2.3601 39 1 9.1100 6.3379 -3.1170 40 1 8.9749 8.1117 -3.0620 41 1 8.8310 7.1611 -1.5637 42 1 7.1582 8.0266 -4.7746 43 1 7.2932 6.2528 -4.8299 44 1 5.7197 7.0154 -4.4969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072691176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = -7.391384 kcal Electronic energy + Delta-G solvation = -22881.361662 eV Core-core repulsion = 19641.092600 eV Total energy + Delta-G solvation = -3240.269062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.17841 -39.29756 -37.12745 -36.84726 -35.36816 -34.55686 -32.05392 -30.09412 -29.12709 -27.95139 -26.84150 -25.49657 -25.15633 -23.41745 -22.76214 -21.67648 -20.68708 -18.69051 -18.43954 -17.85160 -17.00853 -16.46984 -16.23860 -16.06158 -15.99072 -15.46885 -14.97963 -14.52317 -14.37805 -14.33108 -13.82562 -13.62843 -13.41717 -13.15525 -13.07642 -13.02382 -12.94836 -12.83455 -12.69755 -12.50940 -12.42764 -12.27283 -12.07498 -11.96302 -11.86421 -11.72425 -11.44310 -11.41822 -11.26212 -10.61664 -10.48582 -9.13285 -8.16588 -6.34255 0.19641 1.32030 1.34529 1.37074 1.44226 1.46910 2.35855 2.86805 3.10949 3.29650 3.41478 3.90753 4.03568 4.13819 4.14547 4.18586 4.28751 4.29209 4.35431 4.43185 4.55090 4.72466 4.78222 4.81105 4.82612 4.87652 4.90210 4.92440 5.00379 5.04578 5.06489 5.17055 5.23560 5.24684 5.30281 5.32784 5.41198 5.57297 5.62428 5.73397 5.95577 6.14240 6.35695 6.82805 7.30258 7.36648 8.87698 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.005925 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.894154 B = 4724.433397 C = 6359.118748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.028 4.028 3 C 0.156 3.844 4 N -0.318 5.318 5 N -0.307 5.307 6 C 0.188 3.812 7 C 0.152 3.848 8 N -0.543 5.543 9 C 0.205 3.795 10 C -0.548 4.548 11 H 0.066 0.934 12 C 0.018 3.982 13 N -0.924 5.924 14 Si 0.949 3.051 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.062 3.938 19 C -0.099 4.099 20 C -0.087 4.087 21 C -0.143 4.143 22 C -0.146 4.146 23 O -0.228 6.228 24 H 0.105 0.895 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.135 0.865 31 H 0.007 0.993 32 H -0.006 1.006 33 H 0.263 0.737 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.035 0.965 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 5.327 4.079 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.055 4.055 4 N -0.165 5.165 5 N -0.154 5.154 6 C -0.024 4.024 7 C 0.023 3.977 8 N -0.267 5.267 9 C 0.078 3.922 10 C -0.587 4.587 11 H 0.084 0.916 12 C -0.182 4.182 13 N -0.563 5.563 14 Si 0.775 3.225 15 H -0.185 1.185 16 H -0.207 1.207 17 H -0.208 1.208 18 C -0.065 4.065 19 C -0.137 4.137 20 C -0.106 4.106 21 C -0.200 4.200 22 C -0.203 4.203 23 O -0.107 6.107 24 H 0.124 0.876 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.025 0.975 32 H 0.012 0.988 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.421 5.467 5.702 8.609 hybrid contribution -0.554 -0.829 -2.918 3.083 sum -3.975 4.638 2.785 6.713 Atomic orbital electron populations 1.21765 0.91033 1.04825 1.02307 1.20466 0.98369 0.81060 1.06753 1.28951 0.98185 0.99233 0.79156 1.74200 1.16782 0.98974 1.26537 1.74232 1.17779 1.13619 1.09736 1.28234 0.96037 0.86954 0.91151 1.20541 0.91021 0.89515 0.96616 1.62444 1.11230 1.05496 1.47577 1.19386 0.95128 0.87782 0.89858 1.21872 1.33719 1.02096 1.00965 0.91603 1.25717 0.95731 0.94814 1.01959 1.70081 1.42937 1.06873 1.36454 0.85636 0.78411 0.78542 0.79933 1.18486 1.20689 1.20801 1.22132 0.95982 0.90138 0.98247 1.21491 0.94495 0.97334 1.00377 1.21049 0.96766 0.96897 0.95913 1.21802 0.94752 1.01700 1.01737 1.21862 1.01333 1.01291 0.95859 1.84957 1.63189 1.23770 1.38785 0.87615 0.93169 0.91910 0.85303 0.88132 0.91230 0.84770 0.97495 0.98819 0.92821 0.93903 0.89565 0.92112 0.94754 0.89740 0.93966 0.91279 0.92308 0.91314 0.94534 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.89 71.98 0.71 -2.05 16 2 C -0.03 -0.70 6.56 29.85 0.20 -0.50 16 3 C 0.16 5.74 7.73 88.34 0.68 6.43 16 4 N -0.32 -12.75 12.22 -165.50 -2.02 -14.77 16 5 N -0.31 -12.97 12.22 -165.50 -2.02 -14.99 16 6 C 0.19 7.89 7.05 88.34 0.62 8.51 16 7 C 0.15 5.77 5.40 85.56 0.46 6.23 16 8 N -0.54 -22.62 4.65 -905.36 -4.21 -26.84 16 9 C 0.20 10.55 4.80 85.56 0.41 10.96 16 10 C -0.55 -28.73 7.33 25.60 0.19 -28.54 16 11 H 0.07 3.31 5.96 -2.91 -0.02 3.29 16 12 C 0.02 0.96 5.46 84.65 0.46 1.42 16 13 N -0.92 -53.91 13.29 21.45 0.28 -53.62 16 14 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 15 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 C 0.06 2.16 4.53 86.31 0.39 2.55 16 19 C -0.10 -3.27 4.71 30.60 0.14 -3.13 16 20 C -0.09 -2.25 2.92 -10.79 -0.03 -2.28 16 21 C -0.14 -3.25 9.19 71.98 0.66 -2.58 16 22 C -0.15 -3.93 8.95 71.98 0.64 -3.29 16 23 O -0.23 -9.94 10.19 -3.62 -0.04 -9.98 16 24 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 2.72 6.57 -2.39 -0.02 2.71 16 30 H 0.13 4.08 7.86 -2.39 -0.02 4.06 16 31 H 0.01 0.40 6.70 -2.39 -0.02 0.38 16 32 H -0.01 -0.37 6.67 -2.39 -0.02 -0.39 16 33 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.04 1.63 4.65 -2.38 -0.01 1.62 16 35 H 0.09 2.45 7.80 -2.39 -0.02 2.43 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.03 1.36 6.81 -2.39 -0.02 1.34 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.05 1.43 6.59 -2.39 -0.02 1.42 16 Total: -1.00 -67.15 353.59 0.53 -66.62 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.97 Total: 15.38 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.55 Total: -6.28 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -7.98 Total: -110.22 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.04 Total: -9.98 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -67.15 0.53 -66.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072691176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.226 kcal (2) G-P(sol) polarization free energy of solvation -67.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds