Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47274 * 2 1 4 4 N 1.31135 * 126.54862 * 89.70901 * 3 2 1 5 5 C 1.34485 * 105.61579 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.29243 * 180.12867 * 5 4 3 7 7 N 1.46896 * 109.47037 * 270.24290 * 6 5 4 8 8 C 1.46895 * 110.99902 * 189.99506 * 7 6 5 9 9 C 1.50698 * 109.47594 * 168.94378 * 8 7 6 10 10 H 1.08007 * 119.99263 * 354.98982 * 9 8 7 11 11 C 1.37875 * 120.00500 * 174.99366 * 9 8 7 12 12 N 1.31506 * 119.99827 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00116 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47218 * 89.99878 * 13 11 9 15 15 H 1.48499 * 109.47351 * 209.99799 * 13 11 9 16 16 H 1.48505 * 109.47014 * 329.99997 * 13 11 9 17 17 C 1.46906 * 111.00041 * 66.04311 * 7 6 5 18 18 C 1.52998 * 109.46952 * 62.10590 * 17 7 6 19 19 C 1.53004 * 109.46656 * 180.50705 * 18 17 7 20 20 C 1.53006 * 109.46833 * 174.99874 * 19 18 17 21 21 C 1.53002 * 109.47378 * 294.99922 * 19 18 17 22 22 N 1.29947 * 107.42542 * 0.35201 * 5 4 3 23 23 O 1.21308 * 110.24985 * 359.78017 * 22 5 4 24 24 H 1.09005 * 109.47076 * 299.99463 * 1 2 3 25 25 H 1.09001 * 109.47280 * 59.99695 * 1 2 3 26 26 H 1.09001 * 109.47101 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 240.00537 * 2 1 3 28 28 H 1.09000 * 109.47753 * 120.00081 * 2 1 3 29 29 H 1.09006 * 109.46450 * 30.23965 * 6 5 4 30 30 H 1.08996 * 109.47043 * 150.23724 * 6 5 4 31 31 H 1.09005 * 109.47712 * 288.94538 * 8 7 6 32 32 H 1.09006 * 109.47465 * 48.94322 * 8 7 6 33 33 H 0.97005 * 119.99768 * 180.02562 * 12 11 9 34 34 H 1.08999 * 109.46771 * 182.10641 * 17 7 6 35 35 H 1.08997 * 109.46778 * 302.10773 * 17 7 6 36 36 H 1.08991 * 109.47185 * 300.50623 * 18 17 7 37 37 H 1.08998 * 109.47182 * 60.51325 * 18 17 7 38 38 H 1.09000 * 109.47210 * 55.00048 * 19 18 17 39 39 H 1.09000 * 109.47081 * 60.00095 * 20 19 18 40 40 H 1.08996 * 109.46850 * 180.02562 * 20 19 18 41 41 H 1.08994 * 109.47035 * 300.00477 * 20 19 18 42 42 H 1.08999 * 109.46886 * 180.02562 * 21 19 18 43 43 H 1.09000 * 109.47053 * 300.00222 * 21 19 18 44 44 H 1.08999 * 109.46948 * 60.00032 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2876 2.1589 1.0535 5 6 2.7092 3.3421 0.5730 6 6 3.1305 4.5372 1.3888 7 7 1.9611 5.3856 1.6543 8 6 2.3654 6.6714 2.2385 9 6 1.1883 7.6123 2.2457 10 1 0.2582 7.3170 1.7826 11 6 1.2985 8.8499 2.8432 12 7 2.4308 9.2092 3.4074 13 14 -0.1605 10.0164 2.8514 14 1 -0.9783 9.7777 4.0677 15 1 0.3271 11.4191 2.8503 16 1 -0.9902 9.7798 1.6427 17 6 0.9950 4.6950 2.5191 18 6 1.6451 4.3936 3.8709 19 6 0.6430 3.6631 4.7671 20 6 1.3302 3.2515 6.0707 21 6 -0.5319 4.5916 5.0810 22 7 2.6820 3.2674 -0.7240 23 8 2.2960 2.1718 -1.0735 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.5568 4.1999 2.3337 30 1 3.8766 5.1089 0.8371 31 1 2.7107 6.5138 3.2603 32 1 3.1716 7.1027 1.6451 33 1 2.5082 10.0798 3.8281 34 1 0.1225 5.3308 2.6692 35 1 0.6877 3.7616 2.0475 36 1 2.5228 3.7653 3.7199 37 1 1.9442 5.3276 4.3465 38 1 0.2765 2.7744 4.2532 39 1 1.6966 4.1402 6.5845 40 1 0.6164 2.7307 6.7089 41 1 2.1671 2.5901 5.8470 42 1 -1.2456 4.0713 5.7198 43 1 -0.1654 5.4803 5.5948 44 1 -1.0214 4.8848 4.1523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072691498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = 51.019379 kcal Electronic energy + Delta-G solvation = -23025.224606 eV Core-core repulsion = 19787.488425 eV Total energy + Delta-G solvation = -3237.736181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.33518 -38.04609 -35.83179 -35.16723 -34.28586 -32.49959 -30.96658 -28.58341 -28.03171 -26.76949 -25.24751 -24.90286 -23.42444 -22.86253 -21.13150 -20.03308 -19.11502 -17.90080 -17.14062 -16.22468 -15.55217 -15.07634 -14.83670 -14.75615 -14.53386 -13.98390 -13.72226 -13.33954 -13.15359 -12.93325 -12.44329 -12.27002 -12.18700 -11.93016 -11.84765 -11.54505 -11.47162 -11.40656 -11.22618 -11.05898 -10.81040 -10.75585 -10.68453 -10.46225 -10.35520 -10.20687 -9.91725 -9.79451 -9.55167 -9.22182 -8.43161 -7.25182 -6.02814 -4.03402 1.38574 2.49492 2.96923 3.31748 3.38281 3.42936 3.83781 4.33684 4.44745 4.81772 4.84459 4.89412 5.05758 5.28281 5.32242 5.33834 5.39290 5.44015 5.48417 5.61207 5.77762 5.82986 5.90662 5.94347 5.95759 6.08579 6.09174 6.17820 6.21778 6.24597 6.26329 6.36193 6.58444 6.59388 6.64685 6.86326 7.00112 7.26324 7.39682 7.78137 8.03713 8.14132 8.47372 8.49977 9.03518 9.60407 11.07875 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.005182 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.357853 B = 5401.910314 C = 6354.203375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C 0.161 3.839 4 N -0.472 5.472 5 C 0.195 3.805 6 C 0.135 3.865 7 N -0.530 5.530 8 C 0.191 3.809 9 C -0.502 4.502 10 H 0.062 0.938 11 C 0.058 3.942 12 N -0.898 5.898 13 Si 0.895 3.105 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.068 3.932 18 C -0.148 4.148 19 C -0.086 4.086 20 C -0.144 4.144 21 C -0.146 4.146 22 N -0.374 5.374 23 O 0.072 5.928 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.008 0.992 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -18.736 -1.872 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.064 4.064 3 C -0.060 4.060 4 N -0.206 5.206 5 C -0.079 4.079 6 C 0.005 3.995 7 N -0.254 5.254 8 C 0.066 3.934 9 C -0.541 4.541 10 H 0.080 0.920 11 C -0.144 4.144 12 N -0.538 5.538 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.061 4.061 18 C -0.187 4.187 19 C -0.106 4.106 20 C -0.201 4.201 21 C -0.204 4.204 22 N -0.081 5.081 23 O 0.013 5.987 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.026 0.974 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.007 -17.681 -2.333 17.947 hybrid contribution -0.338 0.493 0.781 0.984 sum -2.345 -17.188 -1.552 17.417 Atomic orbital electron populations 1.21789 0.92730 1.03064 1.03397 1.20096 0.97105 0.83784 1.05432 1.28798 0.97483 0.98444 0.81319 1.71903 1.17328 1.02678 1.28732 1.25930 0.98669 0.95234 0.88030 1.20377 0.94855 0.87912 0.96385 1.62381 1.10998 1.04420 1.47623 1.19818 0.96903 0.83243 0.93394 1.21067 0.98295 0.99312 1.35393 0.92013 1.24933 0.95961 0.98018 0.95438 1.69949 1.24819 1.21233 1.37766 0.86545 0.82660 0.80111 0.78423 1.20711 1.21275 1.19817 1.22082 0.96597 0.97372 0.90014 1.22214 0.98260 1.00643 0.97545 1.20964 0.95913 0.98083 0.95596 1.21824 0.99943 1.00933 0.97423 1.21864 0.97516 0.99471 1.01514 1.74660 1.18299 0.99010 1.16157 1.85284 1.59940 1.17633 1.35848 0.91556 0.91870 0.90750 0.88406 0.87594 0.92037 0.88918 0.97427 0.95579 0.92949 0.89871 0.93077 0.92759 0.90664 0.92012 0.92803 0.93430 0.93205 0.93805 0.92428 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.03 -0.19 6.56 -27.88 -0.18 -0.37 16 3 C 0.16 2.09 7.77 -13.05 -0.10 1.98 16 4 N -0.47 -7.56 10.78 -9.86 -0.11 -7.67 16 5 C 0.19 3.54 6.83 -156.38 -1.07 2.47 16 6 C 0.13 2.60 5.38 -4.98 -0.03 2.57 16 7 N -0.53 -11.70 4.69 -237.51 -1.11 -12.81 16 8 C 0.19 4.89 4.52 -4.98 -0.02 4.86 16 9 C -0.50 -13.96 8.40 -34.44 -0.29 -14.25 16 10 H 0.06 1.73 7.38 -52.48 -0.39 1.35 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 13 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.07 1.35 4.73 -3.82 -0.02 1.34 16 18 C -0.15 -2.69 4.03 -26.73 -0.11 -2.80 16 19 C -0.09 -1.34 2.92 -90.61 -0.26 -1.60 16 20 C -0.14 -1.97 9.19 37.16 0.34 -1.63 16 21 C -0.15 -2.29 8.95 37.16 0.33 -1.96 16 22 N -0.37 -6.79 12.16 30.90 0.38 -6.42 16 23 O 0.07 1.08 11.31 18.12 0.20 1.28 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.14 6.06 -51.93 -0.31 0.82 16 30 H 0.09 1.78 7.92 -51.93 -0.41 1.36 16 31 H 0.01 0.21 6.02 -51.93 -0.31 -0.10 16 32 H 0.03 0.72 7.91 -51.93 -0.41 0.30 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.08 1.81 5.43 -51.93 -0.28 1.53 16 35 H 0.05 0.99 6.62 -51.93 -0.34 0.65 16 36 H 0.05 0.97 6.30 -51.93 -0.33 0.65 16 37 H 0.07 1.59 6.32 -51.93 -0.33 1.26 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -31.00 352.11 -8.00 -38.99 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.24 Total: -1.20 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.14 Total: -8.56 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.11 Total: -52.48 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.20 Total: 1.28 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.00 -8.00 -38.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072691498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.013 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds