Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00553 * 2 1 4 4 C 1.53000 * 109.47793 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46504 * 64.99932 * 4 3 2 6 6 C 1.46901 * 110.99855 * 66.04805 * 5 4 3 7 7 C 1.50703 * 109.46820 * 193.94882 * 6 5 4 8 8 H 1.07995 * 120.00137 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99625 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00249 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99764 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47503 * 89.99548 * 11 9 7 13 13 H 1.48499 * 109.46950 * 209.99849 * 11 9 7 14 14 H 1.48501 * 109.46809 * 329.99329 * 11 9 7 15 15 C 1.46895 * 110.99625 * 190.00151 * 5 4 3 16 16 C 1.50703 * 109.47379 * 170.00288 * 15 5 4 17 17 C 1.39864 * 125.90253 * 94.99744 * 16 15 5 18 18 C 1.35317 * 107.92273 * 179.72381 * 17 16 15 19 19 N 1.34946 * 107.74396 * 0.41968 * 18 17 16 20 20 C 1.46500 * 126.03695 * 179.84143 * 19 18 17 21 21 C 1.53000 * 109.47023 * 84.71491 * 20 19 18 22 22 C 1.52997 * 109.47007 * 324.71699 * 20 19 18 23 23 N 1.30839 * 125.89899 * 274.98062 * 16 15 5 24 24 H 1.08998 * 109.47508 * 300.00153 * 1 2 3 25 25 H 1.09001 * 109.47054 * 60.00231 * 1 2 3 26 26 H 1.08997 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47168 * 59.99222 * 3 2 1 28 28 H 1.09005 * 109.47208 * 300.00346 * 3 2 1 29 29 H 1.08998 * 109.46932 * 305.00404 * 4 3 2 30 30 H 1.08994 * 109.47512 * 184.99645 * 4 3 2 31 31 H 1.08988 * 109.47283 * 313.94972 * 6 5 4 32 32 H 1.09004 * 109.47102 * 73.95643 * 6 5 4 33 33 H 0.97003 * 120.00277 * 180.02562 * 10 9 7 34 34 H 1.09003 * 109.47676 * 50.00307 * 15 5 4 35 35 H 1.09004 * 109.47278 * 290.00131 * 15 5 4 36 36 H 1.08002 * 126.03865 * 359.97438 * 17 16 15 37 37 H 1.07997 * 126.12589 * 180.26884 * 18 17 16 38 38 H 1.09002 * 109.47092 * 204.71750 * 20 19 18 39 39 H 1.09001 * 109.47194 * 179.97438 * 21 20 19 40 40 H 1.08992 * 109.47399 * 300.00063 * 21 20 19 41 41 H 1.09004 * 109.46724 * 60.00549 * 21 20 19 42 42 H 1.09002 * 109.47153 * 60.00089 * 22 20 19 43 43 H 1.08998 * 109.47533 * 179.97438 * 22 20 19 44 44 H 1.08996 * 109.47853 * 300.00060 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9778 0.5622 -1.2544 6 6 3.6968 1.4347 -2.4023 7 6 3.8390 0.6465 -3.6789 8 1 4.1106 -0.3981 -3.6412 9 6 3.6225 1.2591 -4.8950 10 7 3.2913 2.5310 -4.9409 11 14 3.7981 0.2820 -6.4774 12 1 2.4905 -0.3262 -6.8315 13 1 4.2360 1.1859 -7.5712 14 1 4.8077 -0.7904 -6.2874 15 6 5.4035 0.2132 -1.1949 16 6 5.7630 -0.6359 -2.3870 17 6 6.3042 -0.1726 -3.5906 18 6 6.4895 -1.2397 -4.4018 19 7 6.0715 -2.3381 -3.7386 20 6 6.0893 -3.7115 -4.2482 21 6 7.4689 -4.3272 -4.0066 22 6 5.7906 -3.7025 -5.7487 23 7 5.6230 -1.9338 -2.4746 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8508 0.5684 0.8426 30 1 3.9785 2.1764 0.0901 31 1 2.6805 1.8207 -2.3250 32 1 4.4019 2.2659 -2.4081 33 1 3.1386 2.9619 -5.7964 34 1 5.6036 -0.3431 -0.2791 35 1 6.0014 1.1245 -1.2044 36 1 6.5371 0.8547 -3.8288 37 1 6.8966 -1.2161 -5.4019 38 1 5.3325 -4.3009 -3.7306 39 1 7.4820 -5.3492 -4.3853 40 1 8.2256 -3.7378 -4.5242 41 1 7.6816 -4.3336 -2.9375 42 1 6.5473 -3.1131 -6.2664 43 1 5.8042 -4.7243 -6.1281 44 1 4.8078 -3.2638 -5.9211 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085161732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = 51.837083 kcal Electronic energy + Delta-G solvation = -23483.150945 eV Core-core repulsion = 20245.450222 eV Total energy + Delta-G solvation = -3237.700723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45955 -37.73379 -36.29995 -35.04277 -32.43859 -30.61430 -29.16602 -28.54610 -27.28898 -27.09383 -25.88165 -24.33812 -22.59411 -21.88572 -20.00553 -19.36693 -18.62895 -16.60078 -16.46194 -15.95843 -15.37871 -14.97899 -14.51442 -14.39092 -14.07096 -13.89355 -13.61443 -13.36480 -12.82314 -12.67309 -12.51370 -12.20394 -12.00838 -11.98210 -11.75770 -11.36259 -11.33555 -11.20028 -11.06060 -10.99550 -10.87043 -10.56405 -10.47716 -10.16588 -9.68068 -9.53045 -9.16785 -9.01055 -8.34665 -8.11660 -7.30019 -7.12428 -5.88882 -3.78552 2.82446 3.25769 3.35884 3.43612 3.46598 3.82266 4.35119 4.56208 4.79970 5.08856 5.12553 5.24034 5.47448 5.48358 5.54736 5.55563 5.60460 5.68208 5.72017 5.79078 5.81362 5.84668 5.92647 5.95884 6.01501 6.12173 6.16674 6.21655 6.24573 6.26917 6.44581 6.68822 6.86181 7.08519 7.29754 7.38784 7.65013 7.74082 7.96722 8.01955 8.20699 8.29319 8.68724 8.76080 9.23917 9.77476 11.22760 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.006919 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.689586 B = 4045.684218 C = 5012.011138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.067 3.933 4 C 0.060 3.940 5 N -0.523 5.523 6 C 0.187 3.813 7 C -0.475 4.475 8 H 0.079 0.921 9 C 0.054 3.946 10 N -0.907 5.907 11 Si 0.879 3.121 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.259 1.259 15 C 0.147 3.853 16 C 0.119 3.881 17 C -0.195 4.195 18 C 0.022 3.978 19 N -0.384 5.384 20 C 0.163 3.837 21 C -0.161 4.161 22 C -0.164 4.164 23 N -0.295 5.295 24 H 0.030 0.970 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.031 0.969 32 H -0.009 1.009 33 H 0.256 0.744 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.137 0.863 37 H 0.151 0.849 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -7.316 4.279 9.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.010 4.010 4 C -0.069 4.069 5 N -0.249 5.249 6 C 0.062 3.938 7 C -0.514 4.514 8 H 0.097 0.903 9 C -0.145 4.145 10 N -0.549 5.549 11 Si 0.708 3.292 12 H -0.216 1.216 13 H -0.220 1.220 14 H -0.183 1.183 15 C 0.018 3.982 16 C -0.049 4.049 17 C -0.224 4.224 18 C -0.120 4.120 19 N -0.170 5.170 20 C 0.061 3.939 21 C -0.219 4.219 22 C -0.222 4.222 23 N -0.117 5.117 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.009 0.991 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.154 0.846 37 H 0.168 0.832 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.745 -8.979 4.604 10.763 hybrid contribution 0.271 1.459 -1.643 2.214 sum 4.017 -7.520 2.961 9.025 Atomic orbital electron populations 1.22640 0.82608 1.01957 0.99173 1.88008 1.18111 1.27552 1.95133 1.22617 0.93983 0.84908 0.99471 1.21985 0.93429 0.97359 0.94130 1.62054 1.14710 1.45567 1.02525 1.19882 0.96150 0.90455 0.87269 1.21507 1.42896 0.97683 0.89353 0.90267 1.24838 0.96295 0.94663 0.98748 1.69961 1.49465 1.10377 1.25073 0.86789 0.78486 0.80412 0.83503 1.21565 1.21985 1.18331 1.20127 0.89653 0.95341 0.93119 1.21645 0.96181 0.90926 0.96173 1.21061 1.08435 0.98623 0.94287 1.21933 1.04381 0.87182 0.98492 1.48344 1.51488 1.05453 1.11679 1.20923 0.98354 0.80160 0.94499 1.22222 0.96427 1.00529 1.02722 1.22182 1.03216 1.02576 0.94206 1.77163 1.21966 1.13830 0.98743 0.95188 0.94296 0.90335 0.94357 0.92329 0.91267 0.94422 0.95134 0.99139 0.93454 0.91456 0.94229 0.84554 0.83158 0.88785 0.91400 0.92285 0.91880 0.91912 0.90860 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.18 10.65 -35.23 -0.38 -7.56 16 3 C 0.07 1.21 6.02 37.16 0.22 1.43 16 4 C 0.06 1.10 5.34 -3.82 -0.02 1.08 16 5 N -0.52 -11.64 4.51 -237.52 -1.07 -12.71 16 6 C 0.19 4.82 4.60 -4.97 -0.02 4.79 16 7 C -0.48 -13.05 5.98 -34.44 -0.21 -13.25 16 8 H 0.08 2.23 4.65 -52.49 -0.24 1.98 16 9 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.91 -26.79 13.29 55.43 0.74 -26.05 16 11 Si 0.88 21.58 29.38 -169.99 -4.99 16.59 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.26 -5.86 5.58 56.52 0.32 -5.54 16 15 C 0.15 3.01 5.52 -4.98 -0.03 2.98 16 16 C 0.12 2.59 4.42 -82.41 -0.36 2.23 16 17 C -0.19 -4.17 7.60 -40.01 -0.30 -4.47 16 18 C 0.02 0.42 8.83 -17.22 -0.15 0.27 16 19 N -0.38 -7.35 3.52 -54.87 -0.19 -7.55 16 20 C 0.16 2.42 3.93 -67.93 -0.27 2.15 16 21 C -0.16 -1.90 9.52 37.16 0.35 -1.54 16 22 C -0.16 -2.17 8.84 37.16 0.33 -1.84 16 23 N -0.30 -6.45 12.38 33.67 0.42 -6.04 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.17 6.12 -51.93 -0.32 0.85 16 29 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 30 H 0.04 0.65 8.12 -51.93 -0.42 0.22 16 31 H 0.03 0.85 5.91 -51.94 -0.31 0.54 16 32 H -0.01 -0.25 7.99 -51.93 -0.41 -0.66 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 35 H 0.04 0.77 8.01 -51.93 -0.42 0.35 16 36 H 0.14 2.99 8.05 -52.49 -0.42 2.57 16 37 H 0.15 2.59 7.17 -52.49 -0.38 2.22 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.80 7.16 -51.93 -0.37 0.43 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -32.55 349.35 -7.22 -39.77 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.56 Total: 1.43 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 0.56 Total: -3.15 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.11 Total: -52.35 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.38 Total: -7.56 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.99 Total: 16.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.55 -7.22 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085161732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.611 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds