Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00553 * 2 1 4 4 C 1.53000 * 109.47793 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46504 * 64.99932 * 4 3 2 6 6 C 1.46901 * 110.99855 * 66.04805 * 5 4 3 7 7 C 1.50703 * 109.46820 * 193.94882 * 6 5 4 8 8 H 1.07995 * 120.00137 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99625 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00249 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99764 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47503 * 89.99548 * 11 9 7 13 13 H 1.48499 * 109.46950 * 209.99849 * 11 9 7 14 14 H 1.48501 * 109.46809 * 329.99329 * 11 9 7 15 15 C 1.46895 * 110.99625 * 190.00151 * 5 4 3 16 16 C 1.50703 * 109.47379 * 170.00288 * 15 5 4 17 17 C 1.39864 * 125.90253 * 94.99744 * 16 15 5 18 18 C 1.35317 * 107.92273 * 179.72381 * 17 16 15 19 19 N 1.34946 * 107.74396 * 0.41968 * 18 17 16 20 20 C 1.46500 * 126.03695 * 179.84143 * 19 18 17 21 21 C 1.53000 * 109.47023 * 84.71491 * 20 19 18 22 22 C 1.52997 * 109.47007 * 324.71699 * 20 19 18 23 23 N 1.30839 * 125.89899 * 274.98062 * 16 15 5 24 24 H 1.08998 * 109.47508 * 300.00153 * 1 2 3 25 25 H 1.09001 * 109.47054 * 60.00231 * 1 2 3 26 26 H 1.08997 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47168 * 59.99222 * 3 2 1 28 28 H 1.09005 * 109.47208 * 300.00346 * 3 2 1 29 29 H 1.08998 * 109.46932 * 305.00404 * 4 3 2 30 30 H 1.08994 * 109.47512 * 184.99645 * 4 3 2 31 31 H 1.08988 * 109.47283 * 313.94972 * 6 5 4 32 32 H 1.09004 * 109.47102 * 73.95643 * 6 5 4 33 33 H 0.97003 * 120.00277 * 180.02562 * 10 9 7 34 34 H 1.09003 * 109.47676 * 50.00307 * 15 5 4 35 35 H 1.09004 * 109.47278 * 290.00131 * 15 5 4 36 36 H 1.08002 * 126.03865 * 359.97438 * 17 16 15 37 37 H 1.07997 * 126.12589 * 180.26884 * 18 17 16 38 38 H 1.09002 * 109.47092 * 204.71750 * 20 19 18 39 39 H 1.09001 * 109.47194 * 179.97438 * 21 20 19 40 40 H 1.08992 * 109.47399 * 300.00063 * 21 20 19 41 41 H 1.09004 * 109.46724 * 60.00549 * 21 20 19 42 42 H 1.09002 * 109.47153 * 60.00089 * 22 20 19 43 43 H 1.08998 * 109.47533 * 179.97438 * 22 20 19 44 44 H 1.08996 * 109.47853 * 300.00060 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9778 0.5622 -1.2544 6 6 3.6968 1.4347 -2.4023 7 6 3.8390 0.6465 -3.6789 8 1 4.1106 -0.3981 -3.6412 9 6 3.6225 1.2591 -4.8950 10 7 3.2913 2.5310 -4.9409 11 14 3.7981 0.2820 -6.4774 12 1 2.4905 -0.3262 -6.8315 13 1 4.2360 1.1859 -7.5712 14 1 4.8077 -0.7904 -6.2874 15 6 5.4035 0.2132 -1.1949 16 6 5.7630 -0.6359 -2.3870 17 6 6.3042 -0.1726 -3.5906 18 6 6.4895 -1.2397 -4.4018 19 7 6.0715 -2.3381 -3.7386 20 6 6.0893 -3.7115 -4.2482 21 6 7.4689 -4.3272 -4.0066 22 6 5.7906 -3.7025 -5.7487 23 7 5.6230 -1.9338 -2.4746 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8508 0.5684 0.8426 30 1 3.9785 2.1764 0.0901 31 1 2.6805 1.8207 -2.3250 32 1 4.4019 2.2659 -2.4081 33 1 3.1386 2.9619 -5.7964 34 1 5.6036 -0.3431 -0.2791 35 1 6.0014 1.1245 -1.2044 36 1 6.5371 0.8547 -3.8288 37 1 6.8966 -1.2161 -5.4019 38 1 5.3325 -4.3009 -3.7306 39 1 7.4820 -5.3492 -4.3853 40 1 8.2256 -3.7378 -4.5242 41 1 7.6816 -4.3336 -2.9375 42 1 6.5473 -3.1131 -6.2664 43 1 5.8042 -4.7243 -6.1281 44 1 4.8078 -3.2638 -5.9211 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085161732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = 29.053984 kcal Electronic energy + Delta-G solvation = -23484.138894 eV Core-core repulsion = 20245.450222 eV Total energy + Delta-G solvation = -3238.688672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.01797 -39.24800 -37.81856 -36.33924 -34.53999 -32.06916 -30.79861 -30.07914 -29.09865 -28.16200 -27.19198 -25.97967 -24.44175 -23.25261 -21.65861 -20.80424 -20.23336 -18.60440 -17.84396 -17.40257 -16.93495 -16.64787 -16.03870 -15.86875 -15.60994 -15.30008 -15.21059 -14.77827 -14.34752 -14.22759 -13.96167 -13.71310 -13.46846 -13.16014 -13.07493 -13.02348 -12.88638 -12.76233 -12.48378 -12.43797 -12.39696 -12.16800 -11.99854 -11.76474 -11.44170 -11.19217 -11.14754 -10.54127 -10.37642 -9.76337 -8.93177 -8.88485 -8.04056 -5.98722 1.23595 1.38459 1.43846 1.52825 1.88534 2.17384 2.51668 3.02452 3.31442 3.51405 3.64550 4.00332 4.08104 4.14076 4.18023 4.20594 4.34763 4.42619 4.54419 4.56542 4.59707 4.65208 4.66749 4.72938 4.75531 4.81544 4.87180 4.92478 4.97725 5.02985 5.16104 5.26239 5.26630 5.31561 5.36661 5.48983 5.85808 6.04420 6.22792 6.40311 6.43826 6.51834 6.76913 7.07847 7.16134 7.60656 9.07542 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.006919 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.689586 B = 4045.684218 C = 5012.011138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.070 3.930 4 C 0.056 3.944 5 N -0.536 5.536 6 C 0.205 3.795 7 C -0.471 4.471 8 H 0.075 0.925 9 C 0.005 3.995 10 N -0.943 5.943 11 Si 0.932 3.068 12 H -0.299 1.299 13 H -0.293 1.293 14 H -0.231 1.231 15 C 0.146 3.854 16 C 0.103 3.897 17 C -0.223 4.223 18 C 0.033 3.967 19 N -0.378 5.378 20 C 0.149 3.851 21 C -0.150 4.150 22 C -0.160 4.160 23 N -0.321 5.321 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.006 0.994 32 H -0.033 1.033 33 H 0.254 0.746 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.121 0.879 37 H 0.177 0.823 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -9.482 4.162 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.007 4.007 4 C -0.072 4.072 5 N -0.262 5.262 6 C 0.079 3.921 7 C -0.510 4.510 8 H 0.093 0.907 9 C -0.191 4.191 10 N -0.587 5.587 11 Si 0.759 3.241 12 H -0.226 1.226 13 H -0.219 1.219 14 H -0.154 1.154 15 C 0.017 3.983 16 C -0.064 4.064 17 C -0.252 4.252 18 C -0.110 4.110 19 N -0.163 5.163 20 C 0.048 3.952 21 C -0.208 4.208 22 C -0.218 4.218 23 N -0.143 5.143 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.024 0.976 32 H -0.016 1.016 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.139 0.861 37 H 0.194 0.806 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.129 0.871 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.570 -11.179 4.515 12.894 hybrid contribution 0.007 2.044 -1.554 2.568 sum 4.577 -9.135 2.961 10.638 Atomic orbital electron populations 1.22824 0.80681 1.03227 1.00034 1.87946 1.20383 1.28297 1.95331 1.22610 0.93671 0.84652 0.99772 1.22147 0.93920 0.98256 0.92879 1.61968 1.16107 1.45089 1.03020 1.19514 0.93956 0.90012 0.88616 1.21672 1.41766 0.97419 0.90138 0.90702 1.25537 0.96319 0.95445 1.01772 1.70086 1.51085 1.11951 1.25556 0.85955 0.78541 0.79833 0.79804 1.22599 1.21900 1.15404 1.20207 0.88621 0.95679 0.93794 1.21833 0.96637 0.91185 0.96782 1.21049 1.10409 0.98626 0.95131 1.22260 1.02940 0.86798 0.99044 1.48782 1.49793 1.07011 1.10731 1.21416 1.00312 0.78030 0.95483 1.22141 0.94222 1.02245 1.02156 1.22201 1.01718 1.04958 0.92897 1.77079 1.22892 1.13876 1.00494 0.92260 0.95421 0.88953 0.90607 0.95311 0.89120 0.93146 0.97619 1.01561 0.93697 0.89487 0.93769 0.86059 0.80591 0.89108 0.87995 0.91898 0.93142 0.91188 0.87107 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -15.31 10.65 -148.98 -1.59 -16.90 16 3 C 0.07 2.48 6.02 71.98 0.43 2.91 16 4 C 0.06 2.02 5.34 86.30 0.46 2.48 16 5 N -0.54 -24.09 4.51 -905.37 -4.08 -28.17 16 6 C 0.20 10.90 4.60 85.56 0.39 11.29 16 7 C -0.47 -26.37 5.98 25.60 0.15 -26.22 16 8 H 0.08 4.24 4.65 -2.91 -0.01 4.23 16 9 C 0.00 0.28 5.46 84.66 0.46 0.74 16 10 N -0.94 -57.28 13.29 21.45 0.28 -57.00 16 11 Si 0.93 44.47 29.38 68.60 2.02 46.48 16 12 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.23 -9.79 5.58 99.48 0.55 -9.23 16 15 C 0.15 5.97 5.52 85.56 0.47 6.45 16 16 C 0.10 4.48 4.42 43.10 0.19 4.67 16 17 C -0.22 -9.54 7.60 21.99 0.17 -9.37 16 18 C 0.03 1.24 8.83 83.54 0.74 1.98 16 19 N -0.38 -13.87 3.52 -327.49 -1.15 -15.02 16 20 C 0.15 4.00 3.93 44.99 0.18 4.18 16 21 C -0.15 -3.03 9.52 71.98 0.69 -2.34 16 22 C -0.16 -3.67 8.84 71.98 0.64 -3.03 16 23 N -0.32 -13.81 12.38 -47.38 -0.59 -14.40 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.03 1.19 6.12 -2.38 -0.01 1.17 16 29 H 0.09 2.89 7.93 -2.39 -0.02 2.87 16 30 H 0.05 1.70 8.12 -2.39 -0.02 1.68 16 31 H 0.01 0.34 5.91 -2.39 -0.01 0.32 16 32 H -0.03 -1.89 7.99 -2.38 -0.02 -1.91 16 33 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.09 3.14 7.93 -2.39 -0.02 3.13 16 35 H 0.04 1.73 8.01 -2.39 -0.02 1.72 16 36 H 0.12 5.47 8.05 -2.91 -0.02 5.45 16 37 H 0.18 5.56 7.17 -2.91 -0.02 5.54 16 38 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.51 7.16 -2.39 -0.02 1.49 16 43 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -72.03 349.35 1.91 -70.12 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.80 Total: 19.06 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 6.22 Total: -4.17 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -5.54 Total: -114.60 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -1.59 Total: -16.90 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.02 Total: 46.48 kcal Total: -72.03 1.91 -70.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085161732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.176 kcal (2) G-P(sol) polarization free energy of solvation -72.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds