Wall clock time and date at job start Tue Mar 31 2020 05:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 C 1.52996 * 109.47486 * 120.00276 * 2 1 3 5 5 C 1.50695 * 109.47016 * 299.99577 * 4 2 1 6 6 H 1.07998 * 120.00049 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00057 * 179.72397 * 5 4 2 8 8 N 1.31514 * 120.00286 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00020 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46839 * 89.99920 * 9 7 5 11 11 H 1.48496 * 109.46902 * 210.00144 * 9 7 5 12 12 H 1.48497 * 109.46830 * 330.00088 * 9 7 5 13 13 C 1.53008 * 109.46947 * 240.00142 * 2 1 3 14 14 N 1.46904 * 109.46790 * 47.35063 * 13 2 1 15 15 C 1.46726 * 111.00016 * 48.22621 * 14 13 2 16 16 C 1.53679 * 109.81985 * 171.30818 * 15 14 13 17 17 N 1.46989 * 107.00552 * 50.57153 * 16 15 14 18 18 C 1.33203 * 128.93774 * 129.42975 * 17 16 15 19 19 O 1.21583 * 123.24128 * 12.28930 * 18 17 16 20 20 N 1.34251 * 113.52133 * 192.28872 * 18 17 16 21 21 C 1.47243 * 109.15419 * 355.03854 * 20 18 17 22 22 C 1.48001 * 122.04526 * 311.32665 * 17 16 15 23 23 H 1.09000 * 111.61563 * 287.16563 * 22 17 16 24 24 C 1.47074 * 111.00164 * 282.48727 * 14 13 2 25 25 H 1.09008 * 109.46815 * 286.92201 * 1 2 3 26 26 H 1.08997 * 109.47364 * 46.91925 * 1 2 3 27 27 H 1.09001 * 109.47444 * 166.92972 * 1 2 3 28 28 H 1.09004 * 109.47193 * 237.19045 * 3 2 1 29 29 H 1.08998 * 109.46826 * 357.18429 * 3 2 1 30 30 H 1.09000 * 109.47396 * 117.19165 * 3 2 1 31 31 H 1.09004 * 109.47352 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.47240 * 59.99798 * 4 2 1 33 33 H 0.96996 * 120.00534 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47147 * 167.34973 * 13 2 1 35 35 H 1.08997 * 109.46937 * 287.35291 * 13 2 1 36 36 H 1.09004 * 109.41364 * 291.41096 * 15 14 13 37 37 H 1.09002 * 109.41321 * 51.26919 * 15 14 13 38 38 H 1.09004 * 109.94530 * 169.94416 * 16 15 14 39 39 H 1.08997 * 109.94732 * 291.19128 * 16 15 14 40 40 H 0.97000 * 125.42368 * 175.02138 * 20 18 17 41 41 H 1.09003 * 110.56472 * 238.93375 * 21 20 18 42 42 H 1.09003 * 110.56375 * 116.08194 * 21 20 18 43 43 H 1.09001 * 109.61191 * 309.50585 * 24 14 13 44 44 H 1.08996 * 109.61538 * 70.02173 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5378 -0.0109 2.4796 6 1 0.9166 0.8670 2.3806 7 6 1.8663 -0.4853 3.7319 8 7 1.4276 0.1344 4.8057 9 14 2.9344 -2.0082 3.9032 10 1 4.3635 -1.6074 3.9526 11 1 2.5777 -2.7248 5.1539 12 1 2.7112 -2.9028 2.7391 13 6 2.0399 -0.7213 -1.2493 14 7 1.3184 -0.2262 -2.4293 15 6 1.2875 1.2406 -2.4496 16 6 0.7230 1.7314 -3.7921 17 7 -0.5358 1.0074 -4.0195 18 6 -1.7346 1.4925 -4.3388 19 8 -1.9144 2.6383 -4.7034 20 7 -2.7253 0.5943 -4.2192 21 6 -2.1499 -0.7165 -3.8745 22 6 -0.6346 -0.4618 -3.8712 23 1 -0.1399 -0.9824 -4.6911 24 6 -0.0266 -0.8156 -2.5104 25 1 -0.3633 0.2991 0.9833 26 1 -0.3634 0.7019 -0.7506 27 1 -0.3634 -1.0010 -0.2324 28 1 2.6861 1.5994 -0.8638 29 1 1.1934 2.1272 -0.0505 30 1 2.6038 1.6286 0.9141 31 1 3.1301 -0.7217 1.2489 32 1 1.6767 -1.7489 1.2492 33 1 1.6590 -0.1991 5.6867 34 1 3.1064 -0.5305 -1.3691 35 1 1.8720 -1.7931 -1.1440 36 1 0.6559 1.6010 -1.6376 37 1 2.2988 1.6261 -2.3204 38 1 0.5322 2.8036 -3.7456 39 1 1.4280 1.5127 -4.5941 40 1 -3.6697 0.7795 -4.3403 41 1 -2.4116 -1.4596 -4.6278 42 1 -2.4867 -1.0349 -2.8879 43 1 0.0421 -1.8989 -2.4110 44 1 -0.6518 -0.4116 -1.7142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091865720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:26 Heat of formation + Delta-G solvation = 30.142083 kcal Electronic energy + Delta-G solvation = -23922.167296 eV Core-core repulsion = 20683.525807 eV Total energy + Delta-G solvation = -3238.641489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48210 -39.40449 -36.57043 -35.16281 -33.34800 -32.04995 -31.24024 -28.82470 -27.85721 -27.44232 -25.95313 -24.35563 -22.72376 -21.85476 -21.41493 -19.61930 -18.22071 -17.60275 -16.78861 -16.73068 -15.83875 -15.48794 -15.19750 -14.64763 -14.51945 -14.23767 -14.01753 -13.66766 -13.41322 -13.34159 -12.95299 -12.83361 -12.58583 -11.95477 -11.86912 -11.59764 -11.34067 -11.13950 -11.00776 -10.70991 -10.66706 -10.52929 -10.33801 -10.14935 -9.96269 -9.77219 -9.63168 -9.37364 -9.10622 -8.66729 -8.56675 -7.75819 -6.06845 -4.03934 2.52226 3.10798 3.26966 3.35290 3.37275 3.81285 3.91290 4.41768 4.45553 4.62846 4.72130 5.09379 5.11327 5.17476 5.25587 5.27108 5.40504 5.45557 5.55192 5.58393 5.66007 5.72603 5.86727 5.90447 5.99614 6.06605 6.17638 6.20735 6.32495 6.44625 6.55459 6.68615 6.82442 6.98184 7.00125 7.08404 7.16449 7.20511 7.27471 7.38104 7.49718 7.76275 8.51434 8.57374 8.98484 9.55818 11.06235 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.004369 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.189538 B = 6407.531108 C = 6435.408057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.144 4.144 4 C 0.000 4.000 5 C -0.511 4.511 6 H 0.075 0.925 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.266 1.266 13 C 0.063 3.937 14 N -0.536 5.536 15 C 0.021 3.979 16 C 0.153 3.847 17 N -0.627 5.627 18 C 0.703 3.297 19 O -0.594 6.594 20 N -0.746 5.746 21 C 0.095 3.905 22 C 0.120 3.880 23 H 0.095 0.905 24 C 0.016 3.984 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.012 0.988 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.427 0.573 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 -3.856 -17.648 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.200 4.200 4 C -0.038 4.038 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.064 4.064 14 N -0.259 5.259 15 C -0.107 4.107 16 C 0.032 3.968 17 N -0.366 5.366 18 C 0.404 3.596 19 O -0.473 6.473 20 N -0.409 5.409 21 C -0.030 4.030 22 C 0.016 3.984 23 H 0.113 0.887 24 C -0.113 4.113 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.108 -3.316 -18.066 18.629 hybrid contribution -0.249 -0.733 1.011 1.273 sum -3.356 -4.049 -17.055 17.847 Atomic orbital electron populations 1.22465 0.95833 0.99535 1.02332 1.21045 0.95152 0.96153 0.95994 1.22400 1.00349 0.95383 1.01909 1.19639 0.95658 0.95542 0.92963 1.21109 1.31834 1.13180 0.88778 0.90675 1.25029 0.95779 0.96727 0.96003 1.69908 1.46017 1.40514 0.97892 0.86835 0.81138 0.84063 0.77534 1.20403 1.21570 1.19121 1.22462 0.97840 0.98997 0.87108 1.61741 1.16108 1.06966 1.41050 1.23304 1.02219 0.88845 0.96357 1.21735 0.81778 0.96081 0.97246 1.47362 1.08710 1.07623 1.72869 1.15710 0.81355 0.84307 0.78274 1.90939 1.84399 1.17705 1.54234 1.45233 1.08780 1.10041 1.76825 1.22331 0.92168 0.86423 1.02113 1.22365 0.94423 0.82199 0.99457 0.88682 1.23391 0.91649 1.00502 0.95734 0.90750 0.93636 0.93477 0.93354 0.93684 0.91216 0.97003 0.96889 0.92818 0.90838 0.91212 0.91513 0.88591 0.89295 0.91077 0.73206 0.89917 0.89900 0.89854 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 6.23 37.15 0.23 -2.23 16 2 C -0.08 -1.42 0.52 -154.51 -0.08 -1.50 16 3 C -0.14 -2.45 7.18 37.16 0.27 -2.18 16 4 C 0.00 0.00 2.92 -27.89 -0.08 -0.08 16 5 C -0.51 -13.53 7.66 -34.44 -0.26 -13.80 16 6 H 0.08 2.16 6.74 -52.49 -0.35 1.80 16 7 C 0.07 1.83 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 9 Si 0.88 21.05 27.47 -169.99 -4.67 16.37 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.11 6.53 56.52 0.37 -5.74 16 13 C 0.06 0.91 4.83 -3.82 -0.02 0.89 16 14 N -0.54 -6.64 4.72 -234.06 -1.10 -7.75 16 15 C 0.02 0.26 3.89 -3.57 -0.01 0.24 16 16 C 0.15 1.83 7.12 -3.42 -0.02 1.81 16 17 N -0.63 -7.86 3.03 -170.02 -0.51 -8.38 16 18 C 0.70 10.09 8.63 -88.78 -0.77 9.32 16 19 O -0.59 -10.96 17.74 5.29 0.09 -10.86 16 20 N -0.75 -7.74 6.40 -64.92 -0.42 -8.15 16 21 C 0.10 0.75 7.69 -3.30 -0.03 0.73 16 22 C 0.12 1.18 4.11 -66.67 -0.27 0.91 16 23 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 24 C 0.02 0.17 3.72 -3.63 -0.01 0.16 16 25 H 0.07 1.52 6.30 -51.92 -0.33 1.19 16 26 H 0.05 0.72 4.13 -51.93 -0.21 0.50 16 27 H 0.05 0.73 6.52 -51.93 -0.34 0.39 16 28 H 0.05 0.69 4.76 -51.93 -0.25 0.45 16 29 H 0.04 0.76 6.45 -51.93 -0.33 0.42 16 30 H 0.07 1.39 6.91 -51.93 -0.36 1.03 16 31 H 0.01 0.26 7.58 -51.93 -0.39 -0.13 16 32 H 0.01 0.29 7.18 -51.93 -0.37 -0.08 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 35 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 36 H 0.07 0.96 3.36 -51.93 -0.17 0.78 16 37 H 0.10 1.13 5.89 -51.93 -0.31 0.83 16 38 H 0.09 1.10 7.97 -51.93 -0.41 0.69 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.43 3.61 8.96 -40.82 -0.37 3.25 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.60 7.65 -51.93 -0.40 0.20 16 43 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 44 H 0.09 1.07 3.39 -51.93 -0.18 0.89 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -32.50 314.11 -8.70 -41.20 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.43 Total: 3.22 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.16 Total: -4.01 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -1.26 Total: -50.65 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.50 -8.70 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091865720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.340 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds