Wall clock time and date at job start Tue Mar 31 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46727 * 2 1 4 4 C 1.52995 * 109.47060 * 240.00437 * 2 1 3 5 5 C 1.50701 * 109.47220 * 59.99735 * 4 2 1 6 6 H 1.08001 * 120.00220 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00118 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99993 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99909 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47038 * 90.00509 * 9 7 5 11 11 H 1.48502 * 109.47369 * 210.00559 * 9 7 5 12 12 H 1.48497 * 109.47306 * 330.00869 * 9 7 5 13 13 C 1.52995 * 109.47094 * 119.99909 * 2 1 3 14 14 N 1.46896 * 109.47710 * 296.75356 * 13 2 1 15 15 C 1.46721 * 111.00137 * 87.00284 * 14 13 2 16 16 C 1.53682 * 109.81810 * 188.70046 * 15 14 13 17 17 N 1.46989 * 107.00756 * 309.42390 * 16 15 14 18 18 C 1.33210 * 128.93123 * 230.54775 * 17 16 15 19 19 O 1.21582 * 123.24280 * 347.71429 * 18 17 16 20 20 N 1.34250 * 113.51923 * 167.69477 * 18 17 16 21 21 C 1.47242 * 109.15347 * 4.96048 * 20 18 17 22 22 C 1.47998 * 122.05628 * 48.65057 * 17 16 15 23 23 H 1.08996 * 111.61595 * 72.85869 * 22 17 16 24 24 C 1.47088 * 111.00274 * 212.73065 * 14 13 2 25 25 H 1.09007 * 109.47085 * 310.26363 * 1 2 3 26 26 H 1.08992 * 109.47722 * 70.26350 * 1 2 3 27 27 H 1.08997 * 109.46972 * 190.27272 * 1 2 3 28 28 H 1.08998 * 109.46442 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47249 * 300.00383 * 3 2 1 30 30 H 1.09000 * 109.47289 * 60.00449 * 3 2 1 31 31 H 1.08994 * 109.47582 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46998 * 300.00179 * 4 2 1 33 33 H 0.97002 * 119.99783 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47061 * 176.74944 * 13 2 1 35 35 H 1.09001 * 109.47104 * 56.75796 * 13 2 1 36 36 H 1.08997 * 109.41310 * 68.59902 * 15 14 13 37 37 H 1.08996 * 109.36002 * 308.77012 * 15 14 13 38 38 H 1.09000 * 109.94865 * 190.04554 * 16 15 14 39 39 H 1.09002 * 110.01735 * 68.82985 * 16 15 14 40 40 H 0.96996 * 125.42173 * 184.93970 * 20 18 17 41 41 H 1.09002 * 110.56342 * 121.08355 * 21 20 18 42 42 H 1.08999 * 110.56669 * 243.93267 * 21 20 18 43 43 H 1.08992 * 109.60987 * 289.97959 * 24 14 13 44 44 H 1.09006 * 109.60814 * 50.48874 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9163 0.8672 -2.3806 7 6 1.8702 -0.4819 -3.7320 8 7 1.4322 0.1383 -4.8057 9 14 2.9442 -2.0007 -3.9035 10 1 2.0856 -3.2116 -3.9484 11 1 3.7358 -1.9083 -5.1565 12 1 3.8649 -2.0897 -2.7418 13 6 2.0400 -0.7212 1.2492 14 7 1.6155 0.0150 2.4474 15 6 0.2793 -0.4098 2.8797 16 6 -0.2279 0.5195 3.9937 17 7 0.8360 0.5990 5.0048 18 6 0.7537 0.4208 6.3224 19 8 -0.3021 0.3661 6.9228 20 7 1.9487 0.3069 6.9234 21 6 3.0122 0.5361 5.9311 22 6 2.2450 0.8713 4.6428 23 1 2.3905 1.9110 4.3498 24 6 2.6147 -0.1032 3.5203 25 1 -0.3634 0.6642 0.7842 26 1 -0.3634 0.3470 -0.9672 27 1 -0.3633 -1.0112 0.1833 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 -0.7208 -1.2496 32 1 1.6766 -1.7488 -1.2493 33 1 1.6665 -0.1930 -5.6867 34 1 3.1285 -0.7719 1.2205 35 1 1.6300 -1.7307 1.2788 36 1 0.3278 -1.4320 3.2548 37 1 -0.4052 -0.3668 2.0325 38 1 -1.1335 0.1071 4.4384 39 1 -0.4308 1.5110 3.5889 40 1 2.0892 0.1060 7.8618 41 1 3.6415 1.3741 6.2310 42 1 3.6110 -0.3647 5.7967 43 1 2.6177 -1.1223 3.9068 44 1 3.6016 0.1456 3.1301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091865722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:28 Heat of formation + Delta-G solvation = -1.535678 kcal Electronic energy + Delta-G solvation = -23321.379655 eV Core-core repulsion = 20081.364516 eV Total energy + Delta-G solvation = -3240.015140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44059 -38.66520 -36.72708 -35.50014 -33.51095 -32.17364 -31.22637 -28.76848 -27.73791 -26.48709 -26.00722 -24.53074 -22.96142 -21.90589 -21.56094 -19.75845 -17.94766 -17.71452 -16.84289 -16.76045 -16.00747 -15.42526 -14.99781 -14.88601 -14.55452 -14.24731 -13.92708 -13.59006 -13.46189 -13.37041 -12.92129 -12.73074 -12.47259 -12.20405 -11.83885 -11.70566 -11.50561 -11.34153 -11.00049 -10.86872 -10.60117 -10.51026 -10.39276 -10.26046 -9.82642 -9.68170 -9.50374 -9.31306 -8.99478 -8.69189 -8.51359 -8.12875 -6.01541 -3.97727 2.41285 2.99520 3.30070 3.38245 3.40528 3.69784 3.75994 4.33531 4.46346 4.48639 4.60515 4.95547 5.04608 5.08305 5.14151 5.26933 5.31644 5.41275 5.50111 5.63933 5.64953 5.74871 5.81673 5.88070 5.93911 6.08585 6.17201 6.41715 6.57661 6.59148 6.66637 6.77995 6.87910 7.02303 7.11031 7.12549 7.17344 7.27259 7.34361 7.38977 7.47280 7.83805 8.46194 8.58187 9.04628 9.61535 11.11550 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037784 B = 0.003770 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.879238 B = 7424.423449 C = 7694.469081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.042 4.042 3 C -0.116 4.116 4 C -0.005 4.005 5 C -0.507 4.507 6 H 0.079 0.921 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.066 3.934 14 N -0.533 5.533 15 C 0.025 3.975 16 C 0.157 3.843 17 N -0.628 5.628 18 C 0.703 3.297 19 O -0.593 6.593 20 N -0.747 5.747 21 C 0.096 3.904 22 C 0.121 3.879 23 H 0.103 0.897 24 C 0.052 3.948 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.007 0.993 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.427 0.573 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 0.000 20.110 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 C -0.173 4.173 4 C -0.043 4.043 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.257 5.257 15 C -0.103 4.103 16 C 0.035 3.965 17 N -0.367 5.367 18 C 0.403 3.597 19 O -0.472 6.472 20 N -0.410 5.410 21 C -0.030 4.030 22 C 0.017 3.983 23 H 0.121 0.879 24 C -0.077 4.077 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.268 0.732 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.538 0.461 19.982 20.298 hybrid contribution 0.944 -1.854 0.278 2.099 sum 4.482 -1.393 20.259 20.796 Atomic orbital electron populations 1.21996 0.95715 0.99438 1.02098 1.20366 0.95205 0.96090 0.92626 1.21587 0.99285 0.95604 1.00806 1.19632 0.95929 0.95287 0.93432 1.21130 1.31462 1.13219 0.88642 0.90353 1.25016 0.95797 0.96710 0.96051 1.69907 1.46138 1.40593 0.97841 0.86858 0.81298 0.84045 0.77475 1.20537 1.21583 1.19202 1.22367 0.99582 0.94699 0.89443 1.61409 1.01250 1.58240 1.04792 1.23032 0.92414 0.96067 0.98832 1.21648 0.88333 1.00627 0.85850 1.47406 1.09368 1.74294 1.05622 1.15712 0.84169 0.77685 0.82103 1.90945 1.29401 1.59359 1.67466 1.45245 1.05679 1.77843 1.12220 1.22326 0.90983 1.02252 0.87410 1.22356 0.81215 1.00875 0.93902 0.87930 1.22541 0.96663 0.96782 0.91692 0.93533 0.90990 0.94488 0.94547 0.92217 0.93476 0.96829 0.97476 0.92885 0.91608 0.94656 0.94982 0.86961 0.89239 0.90369 0.73207 0.89700 0.90128 0.94438 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 6.78 37.16 0.25 -2.08 16 2 C -0.04 -0.75 0.60 -154.51 -0.09 -0.85 16 3 C -0.12 -2.04 8.01 37.16 0.30 -1.74 16 4 C 0.00 -0.11 3.11 -27.89 -0.09 -0.20 16 5 C -0.51 -13.53 8.06 -34.44 -0.28 -13.81 16 6 H 0.08 2.24 5.98 -52.49 -0.31 1.93 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.91 -27.27 13.96 55.43 0.77 -26.50 16 9 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.07 0.96 4.25 -3.83 -0.02 0.95 16 14 N -0.53 -6.52 3.42 -234.07 -0.80 -7.32 16 15 C 0.02 0.30 4.99 -3.57 -0.02 0.28 16 16 C 0.16 1.81 7.12 -3.42 -0.02 1.78 16 17 N -0.63 -7.36 3.03 -170.02 -0.51 -7.88 16 18 C 0.70 9.34 8.63 -88.78 -0.77 8.57 16 19 O -0.59 -10.36 17.74 5.29 0.09 -10.27 16 20 N -0.75 -6.81 6.40 -64.93 -0.42 -7.23 16 21 C 0.10 0.63 7.69 -3.30 -0.03 0.61 16 22 C 0.12 1.09 4.11 -66.68 -0.27 0.81 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 24 C 0.05 0.51 4.82 -3.63 -0.02 0.49 16 25 H 0.05 0.70 6.24 -51.93 -0.32 0.37 16 26 H 0.07 1.45 6.35 -51.93 -0.33 1.12 16 27 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.21 6.62 -51.93 -0.34 0.87 16 30 H 0.05 0.74 7.52 -51.93 -0.39 0.35 16 31 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 32 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 35 H 0.04 0.53 7.82 -51.93 -0.41 0.12 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 1.38 4.11 -51.93 -0.21 1.17 16 38 H 0.09 1.04 7.97 -51.93 -0.41 0.63 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.43 3.06 8.96 -40.82 -0.37 2.69 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.43 7.65 -51.93 -0.40 0.03 16 43 H 0.04 0.38 7.97 -51.93 -0.41 -0.03 16 44 H 0.09 0.77 7.81 -51.93 -0.41 0.36 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -32.84 330.42 -8.86 -41.69 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.16 Total: -0.60 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.15 Total: -3.46 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.96 Total: -48.93 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.84 -8.86 -41.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091865722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.156 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds