Wall clock time and date at job start Tue Mar 31 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46727 * 2 1 4 4 C 1.52995 * 109.47060 * 240.00437 * 2 1 3 5 5 C 1.50701 * 109.47220 * 59.99735 * 4 2 1 6 6 H 1.08001 * 120.00220 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00118 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99993 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99909 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47038 * 90.00509 * 9 7 5 11 11 H 1.48502 * 109.47369 * 210.00559 * 9 7 5 12 12 H 1.48497 * 109.47306 * 330.00869 * 9 7 5 13 13 C 1.52995 * 109.47094 * 119.99909 * 2 1 3 14 14 N 1.46896 * 109.47710 * 296.75356 * 13 2 1 15 15 C 1.46721 * 111.00137 * 87.00284 * 14 13 2 16 16 C 1.53682 * 109.81810 * 188.70046 * 15 14 13 17 17 N 1.46989 * 107.00756 * 309.42390 * 16 15 14 18 18 C 1.33210 * 128.93123 * 230.54775 * 17 16 15 19 19 O 1.21582 * 123.24280 * 347.71429 * 18 17 16 20 20 N 1.34250 * 113.51923 * 167.69477 * 18 17 16 21 21 C 1.47242 * 109.15347 * 4.96048 * 20 18 17 22 22 C 1.47998 * 122.05628 * 48.65057 * 17 16 15 23 23 H 1.08996 * 111.61595 * 72.85869 * 22 17 16 24 24 C 1.47088 * 111.00274 * 212.73065 * 14 13 2 25 25 H 1.09007 * 109.47085 * 310.26363 * 1 2 3 26 26 H 1.08992 * 109.47722 * 70.26350 * 1 2 3 27 27 H 1.08997 * 109.46972 * 190.27272 * 1 2 3 28 28 H 1.08998 * 109.46442 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47249 * 300.00383 * 3 2 1 30 30 H 1.09000 * 109.47289 * 60.00449 * 3 2 1 31 31 H 1.08994 * 109.47582 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46998 * 300.00179 * 4 2 1 33 33 H 0.97002 * 119.99783 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47061 * 176.74944 * 13 2 1 35 35 H 1.09001 * 109.47104 * 56.75796 * 13 2 1 36 36 H 1.08997 * 109.41310 * 68.59902 * 15 14 13 37 37 H 1.08996 * 109.36002 * 308.77012 * 15 14 13 38 38 H 1.09000 * 109.94865 * 190.04554 * 16 15 14 39 39 H 1.09002 * 110.01735 * 68.82985 * 16 15 14 40 40 H 0.96996 * 125.42173 * 184.93970 * 20 18 17 41 41 H 1.09002 * 110.56342 * 121.08355 * 21 20 18 42 42 H 1.08999 * 110.56669 * 243.93267 * 21 20 18 43 43 H 1.08992 * 109.60987 * 289.97959 * 24 14 13 44 44 H 1.09006 * 109.60814 * 50.48874 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9163 0.8672 -2.3806 7 6 1.8702 -0.4819 -3.7320 8 7 1.4322 0.1383 -4.8057 9 14 2.9442 -2.0007 -3.9035 10 1 2.0856 -3.2116 -3.9484 11 1 3.7358 -1.9083 -5.1565 12 1 3.8649 -2.0897 -2.7418 13 6 2.0400 -0.7212 1.2492 14 7 1.6155 0.0150 2.4474 15 6 0.2793 -0.4098 2.8797 16 6 -0.2279 0.5195 3.9937 17 7 0.8360 0.5990 5.0048 18 6 0.7537 0.4208 6.3224 19 8 -0.3021 0.3661 6.9228 20 7 1.9487 0.3069 6.9234 21 6 3.0122 0.5361 5.9311 22 6 2.2450 0.8713 4.6428 23 1 2.3905 1.9110 4.3498 24 6 2.6147 -0.1032 3.5203 25 1 -0.3634 0.6642 0.7842 26 1 -0.3634 0.3470 -0.9672 27 1 -0.3633 -1.0112 0.1833 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 -0.7208 -1.2496 32 1 1.6766 -1.7488 -1.2493 33 1 1.6665 -0.1930 -5.6867 34 1 3.1285 -0.7719 1.2205 35 1 1.6300 -1.7307 1.2788 36 1 0.3278 -1.4320 3.2548 37 1 -0.4052 -0.3668 2.0325 38 1 -1.1335 0.1071 4.4384 39 1 -0.4308 1.5110 3.5889 40 1 2.0892 0.1060 7.8618 41 1 3.6415 1.3741 6.2310 42 1 3.6110 -0.3647 5.7967 43 1 2.6177 -1.1223 3.9068 44 1 3.6016 0.1456 3.1301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091865722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:28 Heat of formation + Delta-G solvation = -25.435526 kcal Electronic energy + Delta-G solvation = -23322.416031 eV Core-core repulsion = 20081.364516 eV Total energy + Delta-G solvation = -3241.051515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.28507 -39.81290 -37.88629 -36.59947 -34.73508 -33.94750 -32.09417 -29.92686 -29.37054 -27.89131 -26.99225 -25.61676 -24.27824 -23.12726 -22.46391 -20.64098 -19.42316 -18.82619 -18.53793 -17.67582 -16.92273 -16.42560 -16.23557 -16.01361 -15.75734 -15.45850 -15.06416 -14.89063 -14.69432 -14.38046 -14.12840 -14.06336 -13.87035 -13.54487 -13.07453 -12.78106 -12.74059 -12.47296 -12.35443 -12.25725 -12.16669 -12.02236 -11.77057 -11.67441 -11.34956 -11.23450 -10.85215 -10.82929 -10.65980 -10.34816 -9.55812 -9.11002 -8.17909 -6.17742 1.38619 1.40250 1.50897 1.60366 2.04306 2.42660 2.86095 3.02608 3.17638 3.62301 3.71834 3.89806 4.06701 4.18115 4.24161 4.30795 4.38119 4.43514 4.59144 4.64764 4.71203 4.78927 4.81638 4.87401 4.90601 4.98442 5.04158 5.07728 5.12943 5.18019 5.29113 5.46603 5.53498 5.61914 5.67725 5.73545 5.83009 5.89991 6.12389 6.18402 6.22946 6.47270 6.53317 6.90455 7.44631 7.55567 8.98453 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037784 B = 0.003770 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.879238 B = 7424.423449 C = 7694.469081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 C -0.105 4.105 4 C -0.004 4.004 5 C -0.500 4.500 6 H 0.043 0.957 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.940 3.060 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.245 1.245 13 C 0.078 3.922 14 N -0.537 5.537 15 C 0.033 3.967 16 C 0.158 3.842 17 N -0.633 5.633 18 C 0.692 3.308 19 O -0.646 6.646 20 N -0.737 5.737 21 C 0.100 3.900 22 C 0.120 3.880 23 H 0.110 0.890 24 C 0.054 3.946 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.021 0.979 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.009 0.991 33 H 0.261 0.739 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.436 0.564 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.039 0.961 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.641 -0.967 22.327 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.043 4.043 3 C -0.162 4.162 4 C -0.041 4.041 5 C -0.538 4.538 6 H 0.062 0.938 7 C -0.196 4.196 8 N -0.599 5.599 9 Si 0.765 3.235 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.168 1.168 13 C -0.049 4.049 14 N -0.261 5.261 15 C -0.095 4.095 16 C 0.036 3.964 17 N -0.371 5.371 18 C 0.392 3.608 19 O -0.529 6.529 20 N -0.399 5.399 21 C -0.024 4.024 22 C 0.016 3.984 23 H 0.128 0.872 24 C -0.075 4.075 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.278 0.722 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.057 0.943 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.967 -0.505 22.226 23.019 hybrid contribution 0.166 -1.460 -0.391 1.521 sum 6.133 -1.965 21.835 22.765 Atomic orbital electron populations 1.21914 0.95621 1.00316 1.00618 1.20306 0.95303 0.96029 0.92679 1.21471 0.99448 0.95371 0.99940 1.19602 0.95868 0.95189 0.93491 1.21456 1.29845 1.12005 0.90533 0.93845 1.25932 0.97677 1.00211 0.95811 1.70072 1.48499 1.42915 0.98445 0.85806 0.79740 0.79934 0.77998 1.19928 1.21763 1.16813 1.22077 1.00033 0.94131 0.88661 1.61294 1.01927 1.57793 1.05107 1.22908 0.92242 0.95917 0.98474 1.21581 0.88379 1.00640 0.85759 1.47490 1.10622 1.73766 1.05183 1.16021 0.84523 0.77689 0.82555 1.90899 1.31608 1.61747 1.68599 1.45232 1.05035 1.76518 1.13072 1.22559 0.90102 1.04499 0.85258 1.22571 0.79790 1.01148 0.94876 0.87196 1.22637 0.96668 0.97149 0.91007 0.91218 0.94981 0.93655 0.94032 0.95969 0.91317 0.96536 0.97295 0.93028 0.90436 0.94661 0.95309 0.87641 0.90020 0.90047 0.72166 0.86688 0.88038 0.94279 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 6.78 71.98 0.49 -3.87 16 2 C -0.04 -1.46 0.60 -52.18 -0.03 -1.49 16 3 C -0.10 -3.59 8.01 71.98 0.58 -3.02 16 4 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 5 C -0.50 -27.29 8.06 25.60 0.21 -27.08 16 6 H 0.04 2.62 5.98 -2.91 -0.02 2.60 16 7 C 0.00 -0.06 5.47 84.66 0.46 0.41 16 8 N -0.96 -59.58 13.96 21.45 0.30 -59.29 16 9 Si 0.94 43.58 27.47 68.60 1.88 45.46 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 13 C 0.08 2.04 4.25 86.30 0.37 2.41 16 14 N -0.54 -11.43 3.42 -894.46 -3.06 -14.49 16 15 C 0.03 0.71 4.99 86.57 0.43 1.15 16 16 C 0.16 3.42 7.12 86.52 0.62 4.04 16 17 N -0.63 -13.48 3.03 -810.96 -2.45 -15.93 16 18 C 0.69 17.32 8.63 179.70 1.55 18.87 16 19 O -0.65 -22.50 17.74 -3.97 -0.07 -22.57 16 20 N -0.74 -11.36 6.40 -477.88 -3.06 -14.42 16 21 C 0.10 0.87 7.69 86.46 0.66 1.54 16 22 C 0.12 1.70 4.11 44.98 0.18 1.88 16 23 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 24 C 0.05 0.83 4.82 86.33 0.42 1.24 16 25 H 0.07 2.02 6.24 -2.38 -0.01 2.01 16 26 H 0.03 1.33 6.35 -2.39 -0.02 1.31 16 27 H 0.04 1.44 7.68 -2.39 -0.02 1.42 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.02 0.90 6.62 -2.39 -0.02 0.88 16 30 H 0.07 2.03 7.52 -2.39 -0.02 2.01 16 31 H 0.02 0.71 7.20 -2.39 -0.02 0.69 16 32 H 0.01 0.38 7.57 -2.38 -0.02 0.36 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.08 1.87 7.54 -2.38 -0.02 1.85 16 35 H 0.04 0.93 7.82 -2.39 -0.02 0.92 16 36 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.11 2.41 4.11 -2.39 -0.01 2.40 16 38 H 0.08 1.89 7.97 -2.39 -0.02 1.87 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.44 5.13 8.96 -92.71 -0.83 4.30 16 41 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.10 0.55 7.65 -2.39 -0.02 0.53 16 43 H 0.04 0.62 7.97 -2.39 -0.02 0.60 16 44 H 0.11 1.31 7.81 -2.38 -0.02 1.29 16 Total: -1.00 -73.96 330.42 -0.32 -74.29 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.11 Total: 10.93 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 6.03 Total: -3.98 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -8.27 Total: -104.13 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.07 Total: -22.57 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -73.96 -0.32 -74.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091865722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.851 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds