Wall clock time and date at job start Tue Mar 31 2020 05:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48495 * 109.47010 * 264.73285 * 3 2 1 5 5 H 1.48499 * 109.47075 * 24.73473 * 3 2 1 6 6 H 1.48504 * 109.47157 * 144.73308 * 3 2 1 7 7 C 1.38810 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00502 * 354.12038 * 7 2 1 9 9 N 1.36939 * 120.00324 * 174.12084 * 7 2 1 10 10 C 1.46968 * 120.59345 * 322.33196 * 9 7 2 11 11 C 1.53368 * 108.63200 * 235.19980 * 10 9 7 12 12 N 1.46966 * 108.63609 * 310.57140 * 11 10 9 13 13 C 1.34771 * 120.59558 * 234.95365 * 12 11 10 14 14 O 1.21589 * 120.00175 * 22.82391 * 13 12 11 15 15 N 1.34771 * 120.00094 * 202.83151 * 13 12 11 16 16 C 1.44582 * 118.64401 * 353.93995 * 15 13 12 17 17 C 1.54314 * 109.90484 * 270.85583 * 16 15 13 18 18 C 1.47096 * 110.29711 * 288.75511 * 17 16 15 19 19 C 1.52563 * 114.32407 * 62.73618 * 18 17 16 20 20 C 1.50881 * 109.35535 * 274.97765 * 19 18 17 21 21 C 1.47612 * 118.64714 * 174.21030 * 15 13 12 22 22 C 1.46964 * 118.80687 * 55.22855 * 12 11 10 23 23 C 1.46963 * 120.59600 * 142.29577 * 9 7 2 24 24 H 0.97002 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.61632 * 115.45113 * 10 9 7 26 26 H 1.08998 * 109.60397 * 354.93981 * 10 9 7 27 27 H 1.09000 * 109.60768 * 190.82693 * 11 10 9 28 28 H 1.09006 * 109.61076 * 70.31863 * 11 10 9 29 29 H 1.08994 * 109.45035 * 30.76364 * 16 15 13 30 30 H 1.08995 * 109.44775 * 150.68769 * 16 15 13 31 31 H 1.09001 * 109.39609 * 168.46676 * 17 16 15 32 32 H 1.08998 * 109.28472 * 48.97396 * 17 16 15 33 33 H 1.08999 * 108.50983 * 301.48120 * 18 17 16 34 34 H 1.09000 * 108.51004 * 183.98971 * 18 17 16 35 35 H 1.09000 * 109.49161 * 155.01743 * 19 18 17 36 36 H 1.09000 * 109.49236 * 34.94069 * 19 18 17 37 37 H 1.09003 * 109.37063 * 331.70013 * 20 19 18 38 38 H 1.08995 * 109.36947 * 212.07913 * 20 19 18 39 39 H 1.09000 * 108.94150 * 258.55315 * 21 15 13 40 40 H 1.09001 * 108.94125 * 17.17414 * 21 15 13 41 41 H 1.08996 * 109.61530 * 64.52191 * 22 12 11 42 42 H 1.09011 * 109.60469 * 185.03147 * 22 12 11 43 43 H 1.08999 * 109.61369 * 244.54373 * 23 9 7 44 44 H 1.09000 * 109.61096 * 5.06051 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6089 1.9821 -1.3941 5 1 1.3964 2.6822 0.5858 6 1 3.4876 1.4748 0.8084 7 6 2.0102 -1.2021 0.0005 8 1 1.4745 -2.1350 0.0968 9 7 3.3742 -1.2054 -0.1209 10 6 4.0484 -0.2471 -1.0080 11 6 4.9258 -1.0267 -1.9952 12 7 5.7417 -1.9882 -1.2404 13 6 7.0838 -1.9946 -1.3637 14 8 7.6642 -0.9959 -1.7432 15 7 7.7824 -3.1082 -1.0667 16 6 7.0804 -4.2344 -0.4931 17 6 7.0647 -4.1156 1.0454 18 6 8.4085 -4.3635 1.5900 19 6 9.4635 -3.3564 1.1425 20 6 10.0275 -3.7821 -0.1906 21 6 9.2339 -3.1255 -1.3347 22 6 5.0674 -2.9464 -0.3533 23 6 4.1901 -2.1668 0.6340 24 1 -0.4850 0.8400 -0.0004 25 1 4.6710 0.4239 -0.4162 26 1 3.3039 0.3296 -1.5568 27 1 5.5767 -0.3356 -2.5308 28 1 4.2930 -1.5610 -2.7040 29 1 6.0548 -4.2488 -0.8617 30 1 7.5817 -5.1588 -0.7798 31 1 6.3681 -4.8455 1.4578 32 1 6.7411 -3.1133 1.3258 33 1 8.7282 -5.3592 1.2828 34 1 8.3500 -4.3430 2.6782 35 1 10.2648 -3.3169 1.8804 36 1 9.0080 -2.3708 1.0466 37 1 9.9621 -4.8664 -0.2813 38 1 11.0723 -3.4783 -0.2547 39 1 9.4170 -3.6789 -2.2557 40 1 9.5820 -2.1007 -1.4643 41 1 4.4448 -3.6173 -0.9451 42 1 5.8120 -3.5232 0.1956 43 1 4.8228 -1.6325 1.3427 44 1 3.5392 -2.8579 1.1696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091971286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:38 Heat of formation + Delta-G solvation = 78.540464 kcal Electronic energy + Delta-G solvation = -24276.033268 eV Core-core repulsion = 21039.490491 eV Total energy + Delta-G solvation = -3236.542777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22842 -37.95053 -37.19271 -34.74529 -33.59429 -32.83106 -31.41359 -30.36699 -28.01461 -26.28762 -25.53962 -23.42517 -23.25525 -21.96119 -20.65648 -20.11375 -19.17985 -17.26078 -16.57709 -16.28013 -15.91056 -15.27452 -14.99719 -14.72088 -14.57609 -14.37377 -14.10759 -13.81123 -13.30485 -13.16508 -12.88659 -12.78772 -12.47945 -12.23215 -11.94602 -11.92414 -11.41985 -11.09096 -10.98128 -10.90392 -10.77583 -10.50841 -10.47428 -10.22898 -10.16209 -9.95112 -9.57800 -9.41898 -8.74041 -8.61533 -8.10148 -6.76763 -5.96704 -3.47599 2.79361 3.30828 3.33695 3.46953 3.50206 3.93695 4.45267 4.49839 4.56377 4.64633 4.75686 4.92563 5.03325 5.13081 5.24844 5.32374 5.41268 5.49941 5.53438 5.55479 5.70775 5.71603 5.78056 5.80421 5.89455 5.94177 5.95860 6.02115 6.06507 6.09387 6.19128 6.22053 6.29681 6.45465 6.57692 6.63860 6.75933 6.95607 7.23803 8.02819 8.16756 8.33536 8.80250 8.90354 9.67356 10.09777 11.18582 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.005264 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.184525 B = 5317.715322 C = 5704.550786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.897 3.103 4 H -0.285 1.285 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.266 4.266 8 H 0.083 0.917 9 N -0.607 5.607 10 C 0.108 3.892 11 C 0.117 3.883 12 N -0.620 5.620 13 C 0.705 3.295 14 O -0.596 6.596 15 N -0.620 5.620 16 C 0.076 3.924 17 C -0.155 4.155 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.130 4.130 21 C 0.129 3.871 22 C 0.017 3.983 23 C 0.135 3.865 24 H 0.264 0.736 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.145 0.855 43 H 0.023 0.977 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.084 -11.268 0.491 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.170 4.170 3 Si 0.728 3.272 4 H -0.212 1.212 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.394 4.394 8 H 0.101 0.899 9 N -0.332 5.332 10 C -0.018 4.018 11 C -0.008 4.008 12 N -0.357 5.357 13 C 0.408 3.592 14 O -0.474 6.474 15 N -0.357 5.357 16 C -0.047 4.047 17 C -0.193 4.193 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.168 4.168 21 C 0.006 3.994 22 C -0.106 4.106 23 C 0.009 3.991 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.162 0.838 43 H 0.041 0.959 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.224 -10.631 0.286 21.100 hybrid contribution 0.224 0.928 0.015 0.955 sum 18.447 -9.703 0.302 20.846 Atomic orbital electron populations 1.69737 1.05730 1.26705 1.53433 1.25500 0.95274 0.98049 0.98217 0.86811 0.79206 0.83614 0.77570 1.21246 1.23211 1.19527 1.18875 0.79742 0.93777 1.47046 0.89941 1.44204 1.03196 1.38637 1.47132 1.21849 0.95081 0.92623 0.92295 1.22048 0.93063 0.91564 0.94090 1.46978 1.03480 1.37728 1.47477 1.16026 0.81728 0.83011 0.78389 1.90845 1.68939 1.32493 1.55167 1.46877 1.08108 1.13743 1.66938 1.22567 1.00190 0.89563 0.92421 1.21395 0.98136 1.03624 0.96169 1.20412 0.94885 0.99168 1.00576 1.21064 0.98120 1.00027 0.96338 1.21785 0.99389 1.00657 0.95005 1.21660 0.78379 1.02815 0.96561 1.24429 0.98818 0.93114 0.94199 1.21372 0.93051 0.92462 0.92263 0.92638 0.94952 0.90200 0.90198 0.91753 0.86690 0.91039 0.89874 0.90287 0.92285 0.92311 0.92058 0.91423 0.91722 0.90882 0.92490 0.89235 0.91854 0.83823 0.95867 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 13.97 55.49 0.78 -27.15 16 2 C 0.03 0.85 5.41 -17.43 -0.09 0.75 16 3 Si 0.90 22.98 24.29 -169.99 -4.13 18.85 16 4 H -0.28 -7.02 6.50 56.52 0.37 -6.65 16 5 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.27 -6.93 6.38 56.52 0.36 -6.57 16 7 C -0.27 -7.35 10.03 -15.06 -0.15 -7.50 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 9 N -0.61 -14.42 2.67 -172.04 -0.46 -14.88 16 10 C 0.11 2.44 4.29 -3.60 -0.02 2.43 16 11 C 0.12 2.28 6.58 -3.60 -0.02 2.26 16 12 N -0.62 -11.06 2.92 -192.92 -0.56 -11.62 16 13 C 0.71 12.38 7.96 -86.93 -0.69 11.69 16 14 O -0.60 -12.45 15.24 5.29 0.08 -12.37 16 15 N -0.62 -8.18 2.25 -218.21 -0.49 -8.67 16 16 C 0.08 0.79 4.87 -4.38 -0.02 0.77 16 17 C -0.15 -1.48 4.13 -28.88 -0.12 -1.60 16 18 C -0.11 -0.96 5.15 -29.79 -0.15 -1.11 16 19 C -0.12 -1.11 5.51 -28.02 -0.15 -1.26 16 20 C -0.13 -1.10 5.71 -27.30 -0.16 -1.25 16 21 C 0.13 1.44 6.14 -2.94 -0.02 1.42 16 22 C 0.02 0.26 4.05 -3.60 -0.01 0.25 16 23 C 0.14 2.60 6.58 -3.60 -0.02 2.58 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.03 0.77 6.83 -51.93 -0.35 0.42 16 26 H 0.08 1.92 4.55 -51.93 -0.24 1.68 16 27 H 0.08 1.55 7.16 -51.93 -0.37 1.18 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.12 1.29 4.07 -70.34 -0.29 1.00 16 30 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.95 6.88 -51.93 -0.36 0.60 16 33 H 0.06 0.43 7.36 -51.93 -0.38 0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 37 H 0.06 0.47 7.32 -51.93 -0.38 0.09 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.19 6.91 -51.93 -0.36 0.83 16 41 H 0.06 0.98 7.74 -51.93 -0.40 0.58 16 42 H 0.15 1.79 0.83 -140.55 -0.12 1.67 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 314.21 15.07 4.74 4.74 Total: -1.00 -33.20 314.21 -8.75 -41.95 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.06 Total: -0.26 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -1.64 Total: 9.42 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.74 Total: -62.32 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.13 Total: 18.85 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.20 -8.75 -41.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091971286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.491 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds