Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.90340 * 2 1 4 4 N 1.40083 * 108.20643 * 180.25888 * 3 2 1 5 5 C 1.46505 * 126.03685 * 179.74138 * 4 3 2 6 6 C 1.53000 * 109.46749 * 269.97642 * 5 4 3 7 7 O 1.42908 * 109.46838 * 180.02562 * 6 5 4 8 8 C 1.34948 * 107.92753 * 359.71826 * 4 3 2 9 9 C 1.50695 * 126.12819 * 179.97438 * 8 4 3 10 10 C 1.35324 * 107.74297 * 0.02562 * 8 4 3 11 11 C 1.50697 * 126.03722 * 180.02562 * 10 8 4 12 12 N 1.46890 * 109.47465 * 89.99823 * 11 10 8 13 13 C 1.46903 * 111.00059 * 293.95480 * 12 11 10 14 14 C 1.46902 * 111.00374 * 169.99557 * 12 11 10 15 15 H 1.09000 * 109.47263 * 310.00400 * 14 12 11 16 16 C 1.53006 * 109.46626 * 70.00094 * 14 12 11 17 17 C 1.50697 * 109.47181 * 189.99969 * 14 12 11 18 18 H 1.07994 * 120.00496 * 0.02562 * 17 14 12 19 19 C 1.37887 * 119.99690 * 180.02562 * 17 14 12 20 20 N 1.31507 * 120.00093 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99676 * 180.02562 * 19 17 14 22 22 H 1.48508 * 109.47028 * 90.00202 * 21 19 17 23 23 H 1.48493 * 109.46961 * 209.99772 * 21 19 17 24 24 H 1.48498 * 109.47538 * 330.00225 * 21 19 17 25 25 H 1.08990 * 109.46996 * 270.21147 * 1 2 3 26 26 H 1.08997 * 109.46790 * 30.21338 * 1 2 3 27 27 H 1.09001 * 109.46977 * 150.20603 * 1 2 3 28 28 H 1.08998 * 109.46762 * 29.97211 * 5 4 3 29 29 H 1.09004 * 109.46866 * 149.97617 * 5 4 3 30 30 H 1.08998 * 109.47137 * 299.99339 * 6 5 4 31 31 H 1.08990 * 109.47478 * 60.00194 * 6 5 4 32 32 H 0.96694 * 113.99814 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47010 * 270.02407 * 9 8 4 34 34 H 1.08994 * 109.47250 * 30.02849 * 9 8 4 35 35 H 1.09004 * 109.46861 * 150.02750 * 9 8 4 36 36 H 1.09002 * 109.47331 * 329.99330 * 11 10 8 37 37 H 1.09002 * 109.46783 * 209.99859 * 11 10 8 38 38 H 1.08997 * 109.46958 * 296.03813 * 13 12 11 39 39 H 1.08998 * 109.47182 * 56.04512 * 13 12 11 40 40 H 1.09004 * 109.47203 * 176.04453 * 13 12 11 41 41 H 1.09001 * 109.47002 * 179.97438 * 16 14 12 42 42 H 1.08993 * 109.46955 * 300.00347 * 16 14 12 43 43 H 1.09000 * 109.47050 * 60.00176 * 16 14 12 44 44 H 0.96999 * 120.00118 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 6 4.7900 1.5006 -0.0134 6 6 5.1942 1.7994 -1.4585 7 8 6.3468 2.6442 -1.4657 8 6 3.6142 -0.7155 -0.0033 9 6 4.8350 -1.5991 -0.0083 10 6 2.3271 -1.1331 0.0036 11 6 1.8598 -2.5658 0.0093 12 7 1.7144 -3.0280 1.3960 13 6 3.0174 -3.0827 2.0721 14 6 1.0388 -4.3314 1.4484 15 1 0.1284 -4.2932 0.8503 16 6 1.9696 -5.4109 0.8920 17 6 0.6881 -4.6583 2.8771 18 1 0.9412 -3.9668 3.6671 19 6 0.0439 -5.8403 3.1756 20 7 -0.2647 -6.6822 2.2136 21 14 -0.3915 -6.2452 4.9465 22 1 -1.7449 -5.7181 5.2563 23 1 -0.3789 -7.7180 5.1349 24 1 0.6028 -5.6212 5.8559 25 1 -0.3633 0.0038 1.0276 26 1 -0.3633 0.8881 -0.5171 27 1 -0.3633 -0.8918 -0.5106 28 1 4.5589 2.4341 0.4996 29 1 5.6119 0.9989 0.4975 30 1 5.4254 0.8659 -1.9715 31 1 4.3725 2.3010 -1.9693 32 1 6.6594 2.8754 -2.3510 33 1 5.1238 -1.8139 -1.0372 34 1 5.6538 -1.0904 0.5003 35 1 4.6102 -2.5322 0.5083 36 1 2.5909 -3.1885 -0.5065 37 1 0.8987 -2.6365 -0.5000 38 1 3.6495 -3.8239 1.5832 39 1 3.4959 -2.1048 2.0185 40 1 2.8735 -3.3601 3.1164 41 1 1.4686 -6.3781 0.9313 42 1 2.2234 -5.1744 -0.1413 43 1 2.8801 -5.4491 1.4901 44 1 -0.7176 -7.5139 2.4237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = 31.605810 kcal Electronic energy + Delta-G solvation = -22933.448746 eV Core-core repulsion = 19694.870729 eV Total energy + Delta-G solvation = -3238.578017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24356 -37.51367 -37.03551 -34.20923 -33.09278 -31.80483 -30.24954 -28.80603 -27.88782 -26.69462 -25.52638 -25.14228 -23.54029 -22.38651 -19.72138 -19.27986 -18.69933 -17.90542 -16.22039 -15.85894 -15.75123 -15.51685 -14.94447 -14.35941 -14.26026 -13.71821 -13.69727 -13.31602 -13.16411 -12.72303 -12.54246 -12.44154 -12.35871 -12.28667 -11.88695 -11.65935 -11.52917 -11.33659 -11.00718 -10.87878 -10.67787 -10.63134 -10.44151 -10.40959 -10.14386 -9.95666 -9.74749 -8.86943 -8.82835 -8.33613 -8.02528 -7.00226 -5.96368 -3.99291 2.00194 2.44792 3.03813 3.34223 3.40485 3.44360 3.99877 4.40632 4.46478 4.72303 4.81396 4.91126 4.97802 5.14515 5.33230 5.34748 5.37391 5.42994 5.52500 5.56638 5.68993 5.90101 5.94987 5.98651 6.20563 6.26725 6.34920 6.36579 6.45944 6.58134 6.72072 6.86529 6.93438 7.00404 7.12397 7.17397 7.23861 7.53420 7.76790 7.90970 7.99327 8.21269 8.46136 8.68098 9.07431 9.65635 11.10624 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029093 B = 0.003871 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.210334 B = 7231.148301 C = 7515.105680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.098 3.902 3 N -0.307 5.307 4 N -0.378 5.378 5 C 0.140 3.860 6 C 0.063 3.937 7 O -0.571 6.571 8 C 0.082 3.918 9 C -0.102 4.102 10 C -0.204 4.204 11 C 0.130 3.870 12 N -0.527 5.527 13 C 0.034 3.966 14 C 0.211 3.789 15 H 0.038 0.962 16 C -0.172 4.172 17 C -0.495 4.495 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.895 3.105 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.275 1.275 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.386 0.614 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.017 0.983 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.006 0.994 43 H 0.030 0.970 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 12.924 -8.605 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 N -0.129 5.129 4 N -0.163 5.163 5 C 0.017 3.983 6 C -0.017 4.017 7 O -0.376 6.376 8 C -0.043 4.043 9 C -0.160 4.160 10 C -0.215 4.215 11 C 0.001 3.999 12 N -0.251 5.251 13 C -0.115 4.115 14 C 0.105 3.895 15 H 0.056 0.944 16 C -0.232 4.232 17 C -0.533 4.533 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.536 5.536 21 Si 0.723 3.277 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.200 1.200 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.025 0.975 43 H 0.049 0.951 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.042 14.394 -7.726 19.176 hybrid contribution 0.401 -1.692 -0.104 1.742 sum 10.442 12.702 -7.830 18.213 Atomic orbital electron populations 1.20151 0.86613 1.02527 1.03459 1.22211 0.96873 0.90101 0.97701 1.77265 0.85903 1.22593 1.27115 1.48053 1.04882 1.03713 1.59607 1.21180 0.84777 0.95707 0.96599 1.22472 0.88133 0.93982 0.97064 1.86374 1.46605 1.70321 1.34319 1.20791 0.96998 0.84139 1.02409 1.20704 0.92945 0.99358 1.03016 1.19823 0.90613 0.96786 1.14294 1.20271 0.99419 0.88442 0.91813 1.62303 1.19633 1.31038 1.12111 1.22349 0.90880 0.98033 1.00201 1.19313 0.91972 0.81311 0.96938 0.94370 1.22407 1.00001 1.05292 0.95451 1.21120 1.36655 1.03108 0.92447 0.92062 1.24915 0.95964 0.96309 0.97133 1.69880 1.41715 1.10565 1.31410 0.86550 0.78841 0.77153 0.85148 1.20731 1.21473 1.20028 0.90025 0.91767 0.90247 0.88309 0.88573 0.93077 0.92650 0.76624 0.90769 0.91470 0.88553 0.95402 0.90906 0.96491 0.93718 0.91404 0.89425 0.97492 0.95061 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.26 36.01 0.37 -0.62 16 2 C 0.10 1.63 7.22 -82.40 -0.59 1.04 16 3 N -0.31 -5.11 12.58 33.67 0.42 -4.69 16 4 N -0.38 -5.46 3.61 -57.14 -0.21 -5.67 16 5 C 0.14 1.54 6.61 -4.04 -0.03 1.51 16 6 C 0.06 0.58 7.37 37.16 0.27 0.85 16 7 O -0.57 -4.75 13.66 -35.23 -0.48 -5.23 16 8 C 0.08 1.23 5.98 -82.26 -0.49 0.73 16 9 C -0.10 -1.21 9.13 36.00 0.33 -0.88 16 10 C -0.20 -3.45 5.00 -105.05 -0.52 -3.98 16 11 C 0.13 2.38 4.51 -4.98 -0.02 2.36 16 12 N -0.53 -11.23 4.69 -237.73 -1.12 -12.35 16 13 C 0.03 0.66 7.25 60.07 0.44 1.10 16 14 C 0.21 5.20 2.31 -68.86 -0.16 5.04 16 15 H 0.04 1.03 7.93 -51.93 -0.41 0.62 16 16 C -0.17 -4.08 8.22 37.16 0.31 -3.77 16 17 C -0.49 -13.45 7.97 -34.44 -0.27 -13.72 16 18 H 0.06 1.69 7.10 -52.49 -0.37 1.32 16 19 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 20 N -0.90 -25.31 11.32 55.43 0.63 -24.69 16 21 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.08 1.10 7.25 -51.93 -0.38 0.72 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 0.92 7.05 -51.93 -0.37 0.56 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.39 1.44 9.12 45.56 0.42 1.85 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.66 7.08 -51.93 -0.37 0.30 16 35 H 0.10 1.27 4.71 -51.93 -0.24 1.02 16 36 H 0.03 0.50 6.69 -51.93 -0.35 0.16 16 37 H 0.07 1.34 7.04 -51.93 -0.37 0.97 16 38 H 0.02 0.32 5.38 -51.93 -0.28 0.04 16 39 H 0.04 0.80 5.29 -51.93 -0.27 0.52 16 40 H 0.07 1.44 6.86 -51.93 -0.36 1.09 16 41 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 42 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 43 H 0.03 0.71 6.33 -51.93 -0.33 0.38 16 44 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -31.43 341.81 -7.12 -38.54 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.02 Total: 1.41 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.48 Total: -8.85 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.27 Total: -47.39 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.48 Total: -5.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.43 -7.12 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.151 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds