Wall clock time and date at job start Tue Mar 31 2020 05:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.90340 * 2 1 4 4 N 1.40083 * 108.20643 * 180.25888 * 3 2 1 5 5 C 1.46505 * 126.03685 * 179.74138 * 4 3 2 6 6 C 1.53000 * 109.46749 * 269.97642 * 5 4 3 7 7 O 1.42908 * 109.46838 * 180.02562 * 6 5 4 8 8 C 1.34948 * 107.92753 * 359.71826 * 4 3 2 9 9 C 1.50695 * 126.12819 * 179.97438 * 8 4 3 10 10 C 1.35324 * 107.74297 * 0.02562 * 8 4 3 11 11 C 1.50697 * 126.03722 * 180.02562 * 10 8 4 12 12 N 1.46890 * 109.47465 * 89.99823 * 11 10 8 13 13 C 1.46903 * 111.00059 * 293.95480 * 12 11 10 14 14 C 1.46902 * 111.00374 * 169.99557 * 12 11 10 15 15 H 1.09000 * 109.47263 * 310.00400 * 14 12 11 16 16 C 1.53006 * 109.46626 * 70.00094 * 14 12 11 17 17 C 1.50697 * 109.47181 * 189.99969 * 14 12 11 18 18 H 1.07994 * 120.00496 * 0.02562 * 17 14 12 19 19 C 1.37887 * 119.99690 * 180.02562 * 17 14 12 20 20 N 1.31507 * 120.00093 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99676 * 180.02562 * 19 17 14 22 22 H 1.48508 * 109.47028 * 90.00202 * 21 19 17 23 23 H 1.48493 * 109.46961 * 209.99772 * 21 19 17 24 24 H 1.48498 * 109.47538 * 330.00225 * 21 19 17 25 25 H 1.08990 * 109.46996 * 270.21147 * 1 2 3 26 26 H 1.08997 * 109.46790 * 30.21338 * 1 2 3 27 27 H 1.09001 * 109.46977 * 150.20603 * 1 2 3 28 28 H 1.08998 * 109.46762 * 29.97211 * 5 4 3 29 29 H 1.09004 * 109.46866 * 149.97617 * 5 4 3 30 30 H 1.08998 * 109.47137 * 299.99339 * 6 5 4 31 31 H 1.08990 * 109.47478 * 60.00194 * 6 5 4 32 32 H 0.96694 * 113.99814 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47010 * 270.02407 * 9 8 4 34 34 H 1.08994 * 109.47250 * 30.02849 * 9 8 4 35 35 H 1.09004 * 109.46861 * 150.02750 * 9 8 4 36 36 H 1.09002 * 109.47331 * 329.99330 * 11 10 8 37 37 H 1.09002 * 109.46783 * 209.99859 * 11 10 8 38 38 H 1.08997 * 109.46958 * 296.03813 * 13 12 11 39 39 H 1.08998 * 109.47182 * 56.04512 * 13 12 11 40 40 H 1.09004 * 109.47203 * 176.04453 * 13 12 11 41 41 H 1.09001 * 109.47002 * 179.97438 * 16 14 12 42 42 H 1.08993 * 109.46955 * 300.00347 * 16 14 12 43 43 H 1.09000 * 109.47050 * 60.00176 * 16 14 12 44 44 H 0.96999 * 120.00118 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 6 4.7900 1.5006 -0.0134 6 6 5.1942 1.7994 -1.4585 7 8 6.3468 2.6442 -1.4657 8 6 3.6142 -0.7155 -0.0033 9 6 4.8350 -1.5991 -0.0083 10 6 2.3271 -1.1331 0.0036 11 6 1.8598 -2.5658 0.0093 12 7 1.7144 -3.0280 1.3960 13 6 3.0174 -3.0827 2.0721 14 6 1.0388 -4.3314 1.4484 15 1 0.1284 -4.2932 0.8503 16 6 1.9696 -5.4109 0.8920 17 6 0.6881 -4.6583 2.8771 18 1 0.9412 -3.9668 3.6671 19 6 0.0439 -5.8403 3.1756 20 7 -0.2647 -6.6822 2.2136 21 14 -0.3915 -6.2452 4.9465 22 1 -1.7449 -5.7181 5.2563 23 1 -0.3789 -7.7180 5.1349 24 1 0.6028 -5.6212 5.8559 25 1 -0.3633 0.0038 1.0276 26 1 -0.3633 0.8881 -0.5171 27 1 -0.3633 -0.8918 -0.5106 28 1 4.5589 2.4341 0.4996 29 1 5.6119 0.9989 0.4975 30 1 5.4254 0.8659 -1.9715 31 1 4.3725 2.3010 -1.9693 32 1 6.6594 2.8754 -2.3510 33 1 5.1238 -1.8139 -1.0372 34 1 5.6538 -1.0904 0.5003 35 1 4.6102 -2.5322 0.5083 36 1 2.5909 -3.1885 -0.5065 37 1 0.8987 -2.6365 -0.5000 38 1 3.6495 -3.8239 1.5832 39 1 3.4959 -2.1048 2.0185 40 1 2.8735 -3.3601 3.1164 41 1 1.4686 -6.3781 0.9313 42 1 2.2234 -5.1744 -0.1413 43 1 2.8801 -5.4491 1.4901 44 1 -0.7176 -7.5139 2.4237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:08 Heat of formation + Delta-G solvation = 8.485892 kcal Electronic energy + Delta-G solvation = -22934.451301 eV Core-core repulsion = 19694.870729 eV Total energy + Delta-G solvation = -3239.580572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.41929 -38.86634 -38.06193 -35.31246 -34.85053 -33.19139 -31.36850 -30.35703 -29.35984 -27.72976 -27.28061 -26.77784 -24.96824 -23.46379 -21.36337 -20.39923 -20.09057 -18.66216 -18.17535 -17.15681 -16.87199 -16.55344 -16.32558 -15.89801 -15.62986 -15.24494 -14.80701 -14.57625 -14.33075 -14.18254 -14.04762 -13.71856 -13.42641 -13.32645 -13.22121 -13.02351 -12.76753 -12.72647 -12.64446 -12.54936 -12.39577 -12.22640 -12.16218 -11.94721 -11.64858 -11.31992 -11.07601 -10.86983 -10.43505 -9.98468 -9.28103 -8.66509 -8.05179 -6.15177 0.85456 1.43733 1.44287 1.45608 1.55142 1.76961 2.47213 3.23563 3.30577 3.50319 3.70285 3.76185 3.94881 4.03699 4.11413 4.21523 4.28874 4.47040 4.57949 4.59420 4.63092 4.67907 4.74142 4.75602 4.80987 4.85711 4.94581 4.97873 5.01291 5.10018 5.19366 5.24894 5.29594 5.31190 5.60766 5.77420 5.78182 5.88951 6.14890 6.29488 6.59818 6.73301 6.79461 6.85665 6.99377 7.53986 9.00227 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029093 B = 0.003871 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.210334 B = 7231.148301 C = 7515.105680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.083 3.917 3 N -0.329 5.329 4 N -0.373 5.373 5 C 0.131 3.869 6 C 0.074 3.926 7 O -0.580 6.580 8 C 0.095 3.905 9 C -0.102 4.102 10 C -0.235 4.235 11 C 0.140 3.860 12 N -0.539 5.539 13 C 0.044 3.956 14 C 0.217 3.783 15 H 0.007 0.993 16 C -0.158 4.158 17 C -0.509 4.509 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.920 5.920 21 Si 0.954 3.046 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.271 1.271 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.406 0.594 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.026 0.974 43 H 0.034 0.966 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.199 13.731 -8.771 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 N -0.151 5.151 4 N -0.157 5.157 5 C 0.010 3.990 6 C -0.005 4.005 7 O -0.389 6.389 8 C -0.033 4.033 9 C -0.159 4.159 10 C -0.246 4.246 11 C 0.011 3.989 12 N -0.263 5.263 13 C -0.104 4.104 14 C 0.110 3.890 15 H 0.025 0.975 16 C -0.217 4.217 17 C -0.548 4.548 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.780 3.220 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.196 1.196 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.258 0.742 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.927 15.238 -7.912 20.906 hybrid contribution -0.095 -1.842 -0.105 1.847 sum 11.832 13.396 -8.017 19.589 Atomic orbital electron populations 1.20154 0.85877 1.03354 1.03117 1.22495 0.97732 0.90224 0.97821 1.77214 0.87049 1.22898 1.27973 1.48298 1.05014 1.04046 1.58310 1.21481 0.83964 0.95355 0.98226 1.22234 0.88252 0.94473 0.95551 1.86326 1.46042 1.70135 1.36400 1.21182 0.97343 0.84618 1.00147 1.20804 0.92225 0.98270 1.04643 1.19738 0.91835 0.95830 1.17240 1.20128 0.99235 0.89633 0.89869 1.62185 1.20692 1.29008 1.14390 1.22262 0.90211 0.99279 0.98676 1.19051 0.91466 0.83348 0.95175 0.97491 1.22193 0.99437 1.03371 0.96690 1.21362 1.36873 1.03093 0.93481 0.93073 1.25616 0.95922 0.96251 1.00739 1.70000 1.42149 1.10817 1.33057 0.85618 0.78514 0.76990 0.80839 1.20485 1.20965 1.19595 0.90870 0.90042 0.90323 0.88600 0.86657 0.92136 0.93580 0.74249 0.88552 0.89019 0.89744 0.94810 0.91827 0.95590 0.91836 0.93626 0.92172 0.95467 0.94707 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.92 10.26 71.24 0.73 -1.19 16 2 C 0.08 2.75 7.22 43.10 0.31 3.06 16 3 N -0.33 -10.64 12.58 -47.38 -0.60 -11.23 16 4 N -0.37 -10.03 3.61 -334.68 -1.21 -11.24 16 5 C 0.13 2.54 6.61 86.38 0.57 3.11 16 6 C 0.07 1.17 7.37 71.98 0.53 1.70 16 7 O -0.58 -7.98 13.66 -148.98 -2.04 -10.02 16 8 C 0.09 2.61 5.98 41.41 0.25 2.86 16 9 C -0.10 -2.06 9.13 71.23 0.65 -1.41 16 10 C -0.24 -7.74 5.00 -20.14 -0.10 -7.84 16 11 C 0.14 5.09 4.51 85.56 0.39 5.47 16 12 N -0.54 -23.00 4.69 -906.05 -4.25 -27.25 16 13 C 0.04 1.68 7.25 127.69 0.93 2.61 16 14 C 0.22 10.87 2.31 44.17 0.10 10.97 16 15 H 0.01 0.40 7.93 -2.39 -0.02 0.38 16 16 C -0.16 -7.46 8.22 71.98 0.59 -6.86 16 17 C -0.51 -28.09 7.97 25.60 0.20 -27.89 16 18 H 0.05 2.87 7.10 -2.91 -0.02 2.85 16 19 C 0.01 0.72 5.30 84.66 0.45 1.16 16 20 N -0.92 -52.64 11.32 21.45 0.24 -52.40 16 21 Si 0.95 44.03 29.54 68.60 2.03 46.05 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.23 7.25 -2.39 -0.02 2.21 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.12 1.80 7.05 -2.38 -0.02 1.79 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.41 1.84 9.12 -74.06 -0.68 1.16 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.42 7.08 -2.39 -0.02 1.40 16 35 H 0.08 1.97 4.71 -2.38 -0.01 1.96 16 36 H 0.03 1.18 6.69 -2.39 -0.02 1.16 16 37 H 0.06 2.38 7.04 -2.39 -0.02 2.37 16 38 H 0.03 0.94 5.38 -2.39 -0.01 0.93 16 39 H 0.06 2.17 5.29 -2.39 -0.01 2.15 16 40 H 0.04 1.93 6.86 -2.39 -0.02 1.91 16 41 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 42 H 0.03 1.13 6.91 -2.39 -0.02 1.11 16 43 H 0.03 1.57 6.33 -2.39 -0.02 1.56 16 44 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -67.23 341.81 0.11 -67.12 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.34 Total: 13.21 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.60 Total: -14.25 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -5.81 Total: -102.12 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -2.04 Total: -10.02 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.23 0.11 -67.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.606 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds