Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30835 * 125.89696 * 2 1 4 4 N 1.40080 * 108.20570 * 180.25599 * 3 2 1 5 5 C 1.46502 * 126.03941 * 179.73701 * 4 3 2 6 6 C 1.52997 * 109.47612 * 269.97871 * 5 4 3 7 7 O 1.42897 * 109.47555 * 179.97438 * 6 5 4 8 8 C 1.34947 * 107.92648 * 359.72265 * 4 3 2 9 9 C 1.50699 * 126.12692 * 179.97438 * 8 4 3 10 10 C 1.35315 * 107.74486 * 359.97438 * 8 4 3 11 11 C 1.50701 * 126.04263 * 179.97438 * 10 8 4 12 12 N 1.46902 * 109.46727 * 90.00199 * 11 10 8 13 13 C 1.46894 * 111.00398 * 293.95921 * 12 11 10 14 14 C 1.46899 * 110.99980 * 170.00105 * 12 11 10 15 15 H 1.09002 * 109.47043 * 60.00322 * 14 12 11 16 16 C 1.52997 * 109.47254 * 300.00251 * 14 12 11 17 17 C 1.50699 * 109.47244 * 180.02562 * 14 12 11 18 18 H 1.08000 * 119.99792 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99902 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00126 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99745 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47438 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.47045 * 120.00577 * 21 19 17 24 24 H 1.48501 * 109.46950 * 240.00369 * 21 19 17 25 25 H 1.08999 * 109.47472 * 270.20905 * 1 2 3 26 26 H 1.09003 * 109.47272 * 30.21567 * 1 2 3 27 27 H 1.09002 * 109.46759 * 150.21232 * 1 2 3 28 28 H 1.09003 * 109.47168 * 29.98242 * 5 4 3 29 29 H 1.08998 * 109.47273 * 149.97737 * 5 4 3 30 30 H 1.09003 * 109.47157 * 300.00378 * 6 5 4 31 31 H 1.09005 * 109.47257 * 59.99773 * 6 5 4 32 32 H 0.96703 * 114.00310 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47138 * 270.01650 * 9 8 4 34 34 H 1.08993 * 109.47705 * 30.02512 * 9 8 4 35 35 H 1.09002 * 109.47125 * 150.02404 * 9 8 4 36 36 H 1.08997 * 109.47352 * 330.01004 * 11 10 8 37 37 H 1.09000 * 109.47237 * 210.00215 * 11 10 8 38 38 H 1.09002 * 109.46987 * 296.04599 * 13 12 11 39 39 H 1.09004 * 109.47461 * 56.04278 * 13 12 11 40 40 H 1.08999 * 109.47654 * 176.04709 * 13 12 11 41 41 H 1.08998 * 109.47533 * 59.99633 * 16 14 12 42 42 H 1.08996 * 109.47853 * 179.97438 * 16 14 12 43 43 H 1.09002 * 109.47153 * 300.00004 * 16 14 12 44 44 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6086 0.6342 -0.0059 5 6 4.7898 1.5009 -0.0134 6 6 5.1941 1.7997 -1.4584 7 8 6.3458 2.6455 -1.4656 8 6 3.6142 -0.7153 -0.0033 9 6 4.8350 -1.5987 -0.0083 10 6 2.3272 -1.1330 0.0047 11 6 1.8599 -2.5657 0.0096 12 7 1.7160 -3.0290 1.3962 13 6 3.0196 -3.0841 2.0709 14 6 1.0406 -4.3325 1.4483 15 1 1.6247 -5.0667 0.8934 16 6 -0.3511 -4.2112 0.8245 17 6 0.9107 -4.7740 2.8833 18 1 1.2913 -4.1485 3.6772 19 6 0.3050 -5.9758 3.1827 20 7 -0.1590 -6.7372 2.2159 21 14 0.1433 -6.5227 4.9615 22 1 0.7401 -5.4947 5.8517 23 1 -1.2928 -6.6946 5.2979 24 1 0.8536 -7.8133 5.1491 25 1 -0.3634 0.0037 1.0276 26 1 -0.3634 0.8881 -0.5172 27 1 -0.3633 -0.8919 -0.5106 28 1 4.5587 2.4344 0.4997 29 1 5.6117 0.9994 0.4975 30 1 5.4252 0.8661 -1.9715 31 1 4.3722 2.3012 -1.9694 32 1 6.6590 2.8761 -2.3510 33 1 5.1239 -1.8136 -1.0371 34 1 5.6539 -1.0900 0.5003 35 1 4.6104 -2.5319 0.5083 36 1 2.5905 -3.1879 -0.5073 37 1 0.8983 -2.6360 -0.4987 38 1 3.6514 -3.8248 1.5807 39 1 3.4980 -2.1061 2.0176 40 1 2.8769 -3.3623 3.1151 41 1 -0.2576 -3.8916 -0.2133 42 1 -0.8521 -5.1784 0.8627 43 1 -0.9352 -3.4770 1.3794 44 1 -0.5848 -7.5829 2.4265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = 32.118189 kcal Electronic energy + Delta-G solvation = -22925.254311 eV Core-core repulsion = 19686.698513 eV Total energy + Delta-G solvation = -3238.555798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24117 -37.49183 -36.87367 -34.18946 -33.13444 -31.78886 -30.19740 -28.98952 -28.36765 -26.67626 -25.77810 -24.38912 -23.34806 -22.36203 -19.78875 -19.26990 -18.82353 -17.90085 -16.32032 -15.90933 -15.70730 -15.54526 -14.96687 -14.29847 -14.20542 -13.78354 -13.52766 -13.45355 -13.09277 -12.95030 -12.51370 -12.41881 -12.29308 -12.10291 -11.83602 -11.75685 -11.61524 -11.52000 -10.99579 -10.88975 -10.64423 -10.49084 -10.43682 -10.20566 -10.07329 -9.92694 -9.76898 -8.84241 -8.81376 -8.41255 -7.99370 -7.03643 -5.97736 -4.01602 2.00330 2.44957 3.03927 3.31480 3.39562 3.44319 3.99994 4.40763 4.44849 4.72532 4.81675 4.91257 4.97892 5.14740 5.29063 5.34586 5.37844 5.43106 5.52779 5.56744 5.69767 5.90620 5.94888 5.98074 6.20806 6.25990 6.35803 6.36694 6.45822 6.58324 6.83575 6.90131 7.00442 7.10612 7.12647 7.21602 7.24145 7.58247 7.79400 7.87953 7.99483 8.28286 8.39383 8.67993 9.05954 9.63438 11.08953 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028823 B = 0.003907 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.227974 B = 7165.324549 C = 7576.347783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.098 3.902 3 N -0.307 5.307 4 N -0.378 5.378 5 C 0.140 3.860 6 C 0.063 3.937 7 O -0.571 6.571 8 C 0.082 3.918 9 C -0.102 4.102 10 C -0.203 4.203 11 C 0.125 3.875 12 N -0.530 5.530 13 C 0.037 3.963 14 C 0.212 3.788 15 H -0.003 1.003 16 C -0.133 4.133 17 C -0.500 4.500 18 H 0.063 0.937 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.386 0.614 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.023 0.977 37 H 0.081 0.919 38 H 0.009 0.991 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.008 0.992 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 13.336 -8.587 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 N -0.129 5.129 4 N -0.162 5.162 5 C 0.017 3.983 6 C -0.016 4.016 7 O -0.376 6.376 8 C -0.044 4.044 9 C -0.160 4.160 10 C -0.214 4.214 11 C -0.004 4.004 12 N -0.254 5.254 13 C -0.111 4.111 14 C 0.106 3.894 15 H 0.014 0.986 16 C -0.191 4.191 17 C -0.538 4.538 18 H 0.081 0.919 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.212 1.212 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.041 0.959 37 H 0.099 0.901 38 H 0.027 0.973 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.027 0.973 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.157 14.799 -7.709 19.034 hybrid contribution 0.520 -1.734 -0.090 1.812 sum 9.677 13.066 -7.799 18.033 Atomic orbital electron populations 1.20150 0.86645 1.02520 1.03416 1.22200 0.96852 0.90096 0.97732 1.77262 0.85909 1.22593 1.27110 1.48048 1.04875 1.03712 1.59612 1.21177 0.84781 0.95704 0.96598 1.22471 0.88144 0.93969 0.97065 1.86372 1.46675 1.70249 1.34321 1.20799 0.97017 0.84142 1.02434 1.20707 0.92939 0.99368 1.03019 1.19817 0.90596 0.96787 1.14235 1.20375 0.99720 0.88463 0.91826 1.62089 1.19501 1.31523 1.12337 1.22321 0.90390 0.97838 1.00554 1.19248 0.90956 0.82789 0.96414 0.98593 1.21850 0.99488 1.02602 0.95133 1.21210 1.37416 1.03318 0.91885 0.91886 1.24922 0.95586 0.96585 0.97166 1.69902 1.40004 1.12298 1.31149 0.86499 0.77719 0.78372 0.85164 1.19795 1.21072 1.21236 0.90076 0.91762 0.90260 0.88311 0.88571 0.93071 0.92664 0.76621 0.90767 0.91460 0.88545 0.95869 0.90054 0.97260 0.93627 0.90998 0.97272 0.89763 0.94602 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.26 36.00 0.37 -0.62 16 2 C 0.10 1.64 7.22 -82.41 -0.59 1.05 16 3 N -0.31 -5.12 12.58 33.67 0.42 -4.69 16 4 N -0.38 -5.48 3.61 -57.14 -0.21 -5.68 16 5 C 0.14 1.54 6.61 -4.04 -0.03 1.51 16 6 C 0.06 0.58 7.37 37.16 0.27 0.85 16 7 O -0.57 -4.76 13.66 -35.23 -0.48 -5.24 16 8 C 0.08 1.22 5.98 -82.27 -0.49 0.73 16 9 C -0.10 -1.22 9.13 36.00 0.33 -0.89 16 10 C -0.20 -3.46 4.99 -105.05 -0.52 -3.98 16 11 C 0.13 2.32 4.76 -4.97 -0.02 2.30 16 12 N -0.53 -11.39 4.61 -237.73 -1.10 -12.49 16 13 C 0.04 0.74 7.68 60.06 0.46 1.20 16 14 C 0.21 5.28 2.06 -68.87 -0.14 5.14 16 15 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 16 C -0.13 -3.18 8.76 37.16 0.33 -2.85 16 17 C -0.50 -13.60 7.93 -34.44 -0.27 -13.87 16 18 H 0.06 1.73 6.40 -52.49 -0.34 1.40 16 19 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 20 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 21 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.11 7.25 -51.93 -0.38 0.73 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 0.93 7.05 -51.93 -0.37 0.56 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.39 1.44 9.12 45.56 0.42 1.86 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.67 7.08 -51.93 -0.37 0.30 16 35 H 0.10 1.28 4.70 -51.93 -0.24 1.03 16 36 H 0.02 0.42 7.75 -51.93 -0.40 0.02 16 37 H 0.08 1.51 4.93 -51.93 -0.26 1.26 16 38 H 0.01 0.18 7.31 -51.93 -0.38 -0.20 16 39 H 0.05 0.82 5.28 -51.93 -0.27 0.54 16 40 H 0.07 1.54 6.24 -51.93 -0.32 1.22 16 41 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 42 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -31.66 343.52 -7.06 -38.71 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.06 Total: 0.53 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.41 Total: -7.92 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.25 Total: -47.55 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.48 Total: -5.24 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.66 -7.06 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.832 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds