Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30835 * 125.89696 * 2 1 4 4 N 1.40080 * 108.20570 * 180.25599 * 3 2 1 5 5 C 1.46502 * 126.03941 * 179.73701 * 4 3 2 6 6 C 1.52997 * 109.47612 * 269.97871 * 5 4 3 7 7 O 1.42897 * 109.47555 * 179.97438 * 6 5 4 8 8 C 1.34947 * 107.92648 * 359.72265 * 4 3 2 9 9 C 1.50699 * 126.12692 * 179.97438 * 8 4 3 10 10 C 1.35315 * 107.74486 * 359.97438 * 8 4 3 11 11 C 1.50701 * 126.04263 * 179.97438 * 10 8 4 12 12 N 1.46902 * 109.46727 * 90.00199 * 11 10 8 13 13 C 1.46894 * 111.00398 * 293.95921 * 12 11 10 14 14 C 1.46899 * 110.99980 * 170.00105 * 12 11 10 15 15 H 1.09002 * 109.47043 * 60.00322 * 14 12 11 16 16 C 1.52997 * 109.47254 * 300.00251 * 14 12 11 17 17 C 1.50699 * 109.47244 * 180.02562 * 14 12 11 18 18 H 1.08000 * 119.99792 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99902 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00126 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99745 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47438 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.47045 * 120.00577 * 21 19 17 24 24 H 1.48501 * 109.46950 * 240.00369 * 21 19 17 25 25 H 1.08999 * 109.47472 * 270.20905 * 1 2 3 26 26 H 1.09003 * 109.47272 * 30.21567 * 1 2 3 27 27 H 1.09002 * 109.46759 * 150.21232 * 1 2 3 28 28 H 1.09003 * 109.47168 * 29.98242 * 5 4 3 29 29 H 1.08998 * 109.47273 * 149.97737 * 5 4 3 30 30 H 1.09003 * 109.47157 * 300.00378 * 6 5 4 31 31 H 1.09005 * 109.47257 * 59.99773 * 6 5 4 32 32 H 0.96703 * 114.00310 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47138 * 270.01650 * 9 8 4 34 34 H 1.08993 * 109.47705 * 30.02512 * 9 8 4 35 35 H 1.09002 * 109.47125 * 150.02404 * 9 8 4 36 36 H 1.08997 * 109.47352 * 330.01004 * 11 10 8 37 37 H 1.09000 * 109.47237 * 210.00215 * 11 10 8 38 38 H 1.09002 * 109.46987 * 296.04599 * 13 12 11 39 39 H 1.09004 * 109.47461 * 56.04278 * 13 12 11 40 40 H 1.08999 * 109.47654 * 176.04709 * 13 12 11 41 41 H 1.08998 * 109.47533 * 59.99633 * 16 14 12 42 42 H 1.08996 * 109.47853 * 179.97438 * 16 14 12 43 43 H 1.09002 * 109.47153 * 300.00004 * 16 14 12 44 44 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6086 0.6342 -0.0059 5 6 4.7898 1.5009 -0.0134 6 6 5.1941 1.7997 -1.4584 7 8 6.3458 2.6455 -1.4656 8 6 3.6142 -0.7153 -0.0033 9 6 4.8350 -1.5987 -0.0083 10 6 2.3272 -1.1330 0.0047 11 6 1.8599 -2.5657 0.0096 12 7 1.7160 -3.0290 1.3962 13 6 3.0196 -3.0841 2.0709 14 6 1.0406 -4.3325 1.4483 15 1 1.6247 -5.0667 0.8934 16 6 -0.3511 -4.2112 0.8245 17 6 0.9107 -4.7740 2.8833 18 1 1.2913 -4.1485 3.6772 19 6 0.3050 -5.9758 3.1827 20 7 -0.1590 -6.7372 2.2159 21 14 0.1433 -6.5227 4.9615 22 1 0.7401 -5.4947 5.8517 23 1 -1.2928 -6.6946 5.2979 24 1 0.8536 -7.8133 5.1491 25 1 -0.3634 0.0037 1.0276 26 1 -0.3634 0.8881 -0.5172 27 1 -0.3633 -0.8919 -0.5106 28 1 4.5587 2.4344 0.4997 29 1 5.6117 0.9994 0.4975 30 1 5.4252 0.8661 -1.9715 31 1 4.3722 2.3012 -1.9694 32 1 6.6590 2.8761 -2.3510 33 1 5.1239 -1.8136 -1.0371 34 1 5.6539 -1.0900 0.5003 35 1 4.6104 -2.5319 0.5083 36 1 2.5905 -3.1879 -0.5073 37 1 0.8983 -2.6360 -0.4987 38 1 3.6514 -3.8248 1.5807 39 1 3.4980 -2.1061 2.0176 40 1 2.8769 -3.3623 3.1151 41 1 -0.2576 -3.8916 -0.2133 42 1 -0.8521 -5.1784 0.8627 43 1 -0.9352 -3.4770 1.3794 44 1 -0.5848 -7.5829 2.4265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = 8.880254 kcal Electronic energy + Delta-G solvation = -22926.261983 eV Core-core repulsion = 19686.698513 eV Total energy + Delta-G solvation = -3239.563471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.42107 -38.70981 -38.04616 -35.30063 -34.90033 -33.16834 -31.30321 -30.77728 -29.69336 -27.71135 -27.43290 -26.07413 -24.80551 -23.46701 -21.49234 -20.39450 -20.18078 -18.66058 -18.32069 -17.19597 -16.83445 -16.56471 -16.33023 -15.89151 -15.50086 -15.31932 -14.83890 -14.67555 -14.42663 -14.13437 -13.88296 -13.77366 -13.43571 -13.30432 -13.22733 -13.05963 -12.88373 -12.71645 -12.64515 -12.51762 -12.38542 -12.27033 -12.00290 -11.83415 -11.61546 -11.36555 -11.07926 -10.80220 -10.47874 -9.98574 -9.27680 -8.75451 -8.06582 -6.17593 0.85008 1.42365 1.43421 1.45049 1.56053 1.76843 2.45934 3.21528 3.30313 3.49852 3.66388 3.75411 3.94808 4.03413 4.10920 4.21296 4.28631 4.46849 4.56996 4.58505 4.61935 4.67050 4.72334 4.77451 4.78690 4.90321 4.97606 5.00267 5.09396 5.13291 5.16371 5.27020 5.27722 5.36623 5.58766 5.77466 5.79957 5.87667 6.14248 6.33699 6.49977 6.73128 6.79273 6.84862 6.98627 7.51543 8.98983 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028823 B = 0.003907 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.227974 B = 7165.324549 C = 7576.347783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.085 3.915 3 N -0.328 5.328 4 N -0.373 5.373 5 C 0.131 3.869 6 C 0.074 3.926 7 O -0.580 6.580 8 C 0.093 3.907 9 C -0.102 4.102 10 C -0.234 4.234 11 C 0.135 3.865 12 N -0.538 5.538 13 C 0.046 3.954 14 C 0.217 3.783 15 H -0.036 1.036 16 C -0.120 4.120 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.956 3.044 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.406 0.594 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.013 0.987 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.923 14.361 -8.730 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 N -0.151 5.151 4 N -0.156 5.156 5 C 0.010 3.990 6 C -0.005 4.005 7 O -0.389 6.389 8 C -0.034 4.034 9 C -0.159 4.159 10 C -0.246 4.246 11 C 0.006 3.994 12 N -0.262 5.262 13 C -0.102 4.102 14 C 0.111 3.889 15 H -0.018 1.018 16 C -0.178 4.178 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.186 4.186 20 N -0.560 5.560 21 Si 0.782 3.218 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.258 0.742 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.031 0.969 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.651 15.862 -7.873 20.665 hybrid contribution 0.170 -1.963 -0.101 1.973 sum 10.821 13.899 -7.975 19.336 Atomic orbital electron populations 1.20165 0.85770 1.03410 1.03163 1.22494 0.97762 0.90113 0.97756 1.77214 0.87008 1.22902 1.27945 1.48290 1.05041 1.03995 1.58321 1.21477 0.83966 0.95357 0.98225 1.22234 0.88275 0.94447 0.95551 1.86325 1.46118 1.70056 1.36404 1.21177 0.97359 0.84654 1.00243 1.20796 0.92304 0.98241 1.04600 1.19720 0.91827 0.95799 1.17219 1.20241 0.99641 0.89626 0.89858 1.62033 1.20403 1.29217 1.14564 1.22244 0.89884 0.99025 0.99085 1.19037 0.91253 0.83708 0.94927 1.01835 1.21658 0.98621 1.01001 0.96569 1.21459 1.37428 1.03559 0.92873 0.92625 1.25649 0.95323 0.96691 1.00911 1.70020 1.40463 1.12578 1.32889 0.85540 0.77675 0.77946 0.80651 1.19463 1.20718 1.20713 0.90808 0.90034 0.90220 0.88554 0.86712 0.92175 0.93550 0.74243 0.88596 0.88990 0.89911 0.95656 0.90566 0.96861 0.91552 0.93079 0.94868 0.92288 0.94982 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.89 10.26 71.24 0.73 -1.16 16 2 C 0.08 2.77 7.22 43.10 0.31 3.09 16 3 N -0.33 -10.56 12.58 -47.39 -0.60 -11.16 16 4 N -0.37 -10.05 3.61 -334.70 -1.21 -11.26 16 5 C 0.13 2.55 6.61 86.38 0.57 3.12 16 6 C 0.07 1.18 7.37 71.98 0.53 1.71 16 7 O -0.58 -8.03 13.66 -148.98 -2.03 -10.06 16 8 C 0.09 2.60 5.98 41.40 0.25 2.85 16 9 C -0.10 -2.12 9.13 71.24 0.65 -1.47 16 10 C -0.23 -7.73 4.99 -20.14 -0.10 -7.83 16 11 C 0.13 4.94 4.76 85.56 0.41 5.35 16 12 N -0.54 -23.16 4.61 -906.06 -4.18 -27.34 16 13 C 0.05 1.81 7.68 127.69 0.98 2.79 16 14 C 0.22 11.04 2.06 44.17 0.09 11.13 16 15 H -0.04 -2.01 8.14 -2.39 -0.02 -2.03 16 16 C -0.12 -5.85 8.76 71.98 0.63 -5.21 16 17 C -0.51 -28.39 7.93 25.60 0.20 -28.18 16 18 H 0.06 3.09 6.40 -2.91 -0.02 3.07 16 19 C 0.01 0.70 5.30 84.65 0.45 1.15 16 20 N -0.92 -52.74 11.32 21.45 0.24 -52.49 16 21 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 2.20 7.25 -2.39 -0.02 2.19 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.11 1.82 7.05 -2.39 -0.02 1.80 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.41 1.87 9.12 -74.06 -0.68 1.19 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.47 7.08 -2.39 -0.02 1.45 16 35 H 0.08 2.01 4.70 -2.39 -0.01 2.00 16 36 H 0.03 0.91 7.75 -2.39 -0.02 0.89 16 37 H 0.08 2.82 4.93 -2.39 -0.01 2.81 16 38 H 0.01 0.50 7.31 -2.39 -0.02 0.48 16 39 H 0.07 2.30 5.28 -2.38 -0.01 2.29 16 40 H 0.05 2.20 6.24 -2.39 -0.01 2.18 16 41 H 0.03 1.40 6.20 -2.39 -0.01 1.39 16 42 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 43 H 0.03 1.52 8.14 -2.39 -0.02 1.51 16 44 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -67.66 343.52 0.29 -67.38 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.33 Total: 11.69 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 5.70 Total: -12.68 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -5.74 Total: -102.25 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -2.03 Total: -10.06 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.66 0.29 -67.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.259 kcal (2) G-P(sol) polarization free energy of solvation -67.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds